IslandPath Analysis: Ehrlichia ruminantium str. Welgevonden



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.51   STD DEV: 2.94
Ehrlichia ruminantium str. Welgevonden, complete genome - 1..1516355
888 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.75	0	89..1096	+	335	57238732	gapB	Erum0010	-	glyceraldehyde 3-phosphate dehydrogenase
2	 28.51	0	2717..3379	-	220	57238733	elbB	Erum0020	-	isoprenoid biosynthesis protein
3	 29.29	0	3503..4318	+	271	57238734	proC	Erum0030	-	pyrroline-5-carboxylate reductase
4	 26.02	-1	5143..6606	+	487	57238735	dnaZ	Erum0040	-	DNA polymerase III gamma and tau chains
5	 25.49	-1	6617..6922	+	101	57238736	-	Erum0050	-	hypothetical protein
6	 30.28	0	6929..7942	+	337	57238737	asd	Erum0060	-	aspartate-semialdehyde dehydrogenase
7	 30.18	0	9675..10880	-	401	57238738	metK	Erum0070	-	S-adenosylmethionine synthetase
8	 26.43	-1	11661..12833	+	390	57238739	ubiF	Erum0080	-	putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
9	 24.40	-2	13718..14299	-	193	57238740	-	Erum0090	-	hypothetical protein
10	 31.67	0	14660..15502	+	280	57238741	glyQ	Erum0110	-	glycyl-tRNA synthetase subunit alpha
11	 25.18	-1	15517..17625	+	702	57238742	glyS	Erum0120	-	glycyl-tRNA synthetase beta chain
12	 34.20	+1	17690..18838	+	382	57238743	dnaJ	Erum0130	-	chaperone DnaJ
13	 32.25	0	18869..19702	-	277	57238744	nadC	Erum0140	-	nicotinate-nucleotide pyrophosphorylase
14	 26.87	-1	19810..20397	+	195	57238745	-	Erum0150	-	hypothetical protein
15	 31.06	0	20405..20887	-	160	57238746	ruvC	Erum0160	-	crossover junction endodeoxyribonuclease RuvC
16	 32.24	0	21076..21900	-	274	57238747	coxC	Erum0170	-	putative cytochrome c oxidase polypeptide III
17	 31.65	0	21995..23002	-	335	57238748	hemE	Erum0180	-	uroporphyrinogen decarboxylase
18	 27.91	0	23425..24291	+	288	57238749	corC	Erum0190	-	hypothetical protein
19	 27.00	-1	24288..24824	-	178	57238750	-	Erum0200	-	hypothetical protein
20	 30.30	0	25216..26400	-	394	57238751	-	Erum0210	-	hypothetical protein
21	 27.47	-1	26681..27430	+	249	57238752	bioC	Erum0220	-	hypothetical protein
22	 30.58	0	27448..28392	+	314	57238753	nadA	Erum0230	-	quinolinate synthetase
23	 31.48	0	28552..28929	-	125	57238754	fdxA	Erum0240	-	ferredoxin
24	 38.14	+2	29140..30513	+	457	57238755	-	Erum0250	-	hypothetical protein
25	 30.84	0	31165..33570	-	801	57238756	virD4	Erum0260	-	putative virD4 protein
26	 33.83	+1	33611..34609	-	332	57238757	virB11	Erum0270	-	VirB11 protein
27	 33.04	0	34633..35979	-	448	57238758	virB10	Erum0280	-	VirB10 protein
28	 26.62	-1	36000..36803	-	267	57238759	virB9	Erum0290	-	putative conjugal transfer protein trbG precursor
29	 30.19	0	36787..37485	-	232	57238760	virB8	Erum0300	-	hypothetical protein
30	 28.41	0	37641..38756	-	371	57238761	-	Erum0310	-	GTP cyclohydrolase II
31	 28.83	0	40543..41607	-	354	57238762	-	Erum0320	-	hypothetical protein
32	 23.96	-2	41683..42162	-	159	57238763	-	Erum0330	-	hypothetical protein
33	 32.58	0	42252..43049	-	265	57238764	dapF	Erum0340	-	diaminopimelate epimerase
34	 23.84	-2	43280..43711	-	143	57238765	-	Erum0350	-	hypothetical protein
35	 30.30	0	44788..45975	+	395	57238766	pgk	Erum0360	-	phosphoglycerate kinase
36	 29.39	0	47559..48725	-	388	57238767	xseA	Erum0370	-	putative exodeoxyribonuclease VII large subunit
37	 26.61	-1	49128..49796	-	222	57238768	-	Erum0380	-	hypothetical protein
38	 32.98	0	50073..50927	+	284	57238769	dapD	Erum0390	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
39	 30.83	0	51391..52710	+	439	57238770	trmE	Erum0400	-	tRNA modification GTPase TrmE
40	 29.85	0	54854..55399	-	181	57238771	dfp	Erum0410	-	phosphopantothenoylcysteine decarboxylase
41	 29.79	0	55495..57528	+	677	57238772	recG	Erum0420	-	ATP-dependent DNA helicase RecG
42	 28.35	0	59892..60854	+	320	57238773	-	Erum0430	-	putative NADH-ubiquinone oxidoreductase subunit
43	 31.14	0	63003..63458	-	151	57238774	dksA	Erum0440	-	DNAK suppressor protein
44	 27.15	-1	63571..64233	+	220	57238775	ccmB	Erum0450	-	Heme exporter protein B
45	 30.51	0	64380..65300	+	306	57238776	-	Erum0460	-	zinc transporter
46	 26.79	-1	65766..66392	+	208	57238777	-	Erum0470	-	hypothetical protein
47	 31.60	0	67031..67318	-	95	57238778	rpsT	Erum0480	-	30S ribosomal protein S20
48	 30.37	0	69066..71663	-	865	57238779	polA	Erum0490	-	DNA polymerase I
49	 28.80	0	72863..73171	+	102	57238780	-	Erum0500	-	hypothetical protein
50	 30.83	0	73502..74419	+	305	57238781	argF	Erum0510	-	ornithine carbamoyltransferase
51	 28.69	0	75334..76452	+	372	57238782	recF	Erum0520	-	recombination protein F
52	 34.47	+1	77021..77812	-	263	57238783	-	Erum0530	-	hypothetical protein
53	 34.25	+1	77840..78385	-	181	57238784	def1	Erum0540	-	peptide deformylase
54	 31.13	0	78468..79193	+	241	57238785	plsC	Erum0550	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
55	 31.64	0	80021..80668	+	215	57238786	rpe	Erum0560	-	ribulose-phosphate 3-epimerase
56	 30.58	0	82207..83004	+	265	57238787	-	Erum0570	-	hypothetical protein
57	 28.89	0	83014..83733	+	239	57238788	-	Erum0580	-	ribonucleotide ABC transporter ATP-binding protein
58	 29.04	0	84258..86099	+	613	57238789	-	Erum0590	-	hypothetical protein
59	 28.02	0	86701..87678	-	325	57238790	ispB	Erum0600	-	octaprenyl-diphosphate synthase
60	 31.85	0	88114..89526	-	470	57238791	glnA	Erum0610	-	glutamine synthetase I
61	 31.98	0	89895..91151	+	418	57238792	tyrS	Erum0620	-	tyrosyl-tRNA synthetase
62	 31.33	0	91191..92387	+	398	57238793	hemA	Erum0630	-	5-aminolevulinate synthase
63	 27.10	-1	92734..93102	-	122	57238794	-	Erum0631	-	hypothetical protein
64	 27.70	0	93910..94779	+	289	57238795	secF	Erum0640	-	preprotein translocase subunit SecF
65	 36.21	+1	96250..97152	-	300	57238796	fbaB	Erum0650	-	fructose-bisphosphate aldolase
66	 32.65	0	97564..108711	+	3715	57238797	-	Erum0660	-	hypothetical protein
67	 31.37	0	109271..110491	+	406	57238798	pdhC	Erum0670	-	branched-chain alpha-keto acid dehydrogenase subunit E2
68	 31.55	0	112630..114252	+	540	57238799	-	Erum0680	-	hypothetical protein
69	 29.87	0	115442..116854	+	470	57238800	-	Erum0690	-	hypothetical protein
70	 32.66	0	118368..120011	+	547	57238801	-	Erum0700	-	hypothetical protein
71	 34.68	+1	120001..120372	+	123	57238802	-	Erum0710	-	hypothetical protein
72	 33.44	0	120712..123507	+	931	57238803	-	Erum0720	-	hypothetical protein
73	 27.30	-1	123762..124043	-	93	57238804	-	Erum0730	-	hypothetical protein
74	 33.96	+1	124892..126478	+	528	57238805	guaA	Erum0740	-	bifunctional GMP synthase/glutamine amidotransferase protein
75	 32.69	0	128215..129462	+	415	57238806	gltA	Erum0750	-	citrate synthase
76	 29.00	0	131838..133037	+	399	57238807	gshA	Erum0770	-	hypothetical protein
77	 32.39	0	135473..137905	+	810	57238808	valS	Erum0780	-	valyl-tRNA synthetase
78	 31.54	0	140410..140856	-	148	57238809	smpB	Erum0790	-	SsrA-binding protein
79	 31.76	0	140880..141515	-	211	57238810	ribB	Erum0800	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
80	 34.56	+1	141535..142023	-	162	57238811	greA	Erum0810	-	transcription elongation factor greA
81	 34.19	+1	142068..143591	-	507	57238812	atpA	Erum0820	-	F0F1 ATP synthase subunit alpha
82	 31.40	0	143594..144163	-	189	57238813	atpH	Erum0830	-	ATP synthase delta chain
83	 25.10	-1	145084..145338	-	84	57238814	-	Erum0831	-	hypothetical protein
84	 29.15	0	145344..146585	-	413	57238815	-	Erum0840	-	hypothetical protein
85	 29.86	0	146582..147358	-	258	57238816	-	Erum0850	-	hypothetical protein
86	 31.23	0	147367..148602	-	411	57238817	lolE	Erum0860	-	lipoprotein releasing system transmembrane protein lolC
87	 27.65	0	150161..151180	+	339	57238818	-	Erum0870	-	hypothetical protein
88	 29.53	0	152474..154390	+	638	57238819	ccmF	Erum0880	-	cytochrome c-type biogenesis protein CycK
89	 27.88	0	154565..155407	+	280	57238820	-	Erum0890	-	hypothetical protein
90	 30.41	0	157638..159038	-	466	57238821	purF	Erum0900	-	amidophosphoribosyltransferase
91	 28.35	0	159619..160200	-	193	57238822	pth	Erum0910	-	peptidyl-tRNA hydrolase
92	 35.09	+1	160226..160852	-	208	57238823	rplY	Erum0920	-	50S ribosomal protein L25/general stress protein Ctc
93	 27.99	0	163023..163715	-	230	57238824	comF	Erum0930	-	putative competence protein F (DNA transformation protein comF)
94	 31.42	0	163716..164867	-	383	57238825	dapE	Erum0940	-	succinyl-diaminopimelate desuccinylase
95	 33.63	+1	166798..168507	-	569	57238826	-	Erum0950	-	glutathione-regulated potassium-efflux system protein kefB
96	 29.38	0	168521..169102	-	193	57238827	-	Erum0960	-	hypothetical protein
97	 26.92	-1	169193..169660	-	155	57238828	-	Erum0970	-	hypothetical protein
98	 36.74	+2	171496..172494	-	332	57238829	pdhB	Erum0980	-	pyruvate dehydrogenase subunit beta
99	 29.22	0	173802..175625	-	607	57238830	-	Erum0990	-	hypothetical protein
100	 34.59	+1	175813..177240	+	475	57238831	tldD	Erum1000	-	TldD protein
30.51	MEAN

2.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.