IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 1..5459213
4813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.61	0	679..2097	+	472	39933081	dnaA	RPA0001	-	chromosomal replication initiation protein
2	 64.88	0	2332..3450	+	372	39933082	dnaN	RPA0002	-	DNA polymerase III subunit beta
3	 68.98	+1	3667..4833	+	388	39933083	recF	RPA0003	-	recombination protein F
4	 64.74	0	5050..7491	+	813	39933084	gyrB	RPA0004	-	DNA gyrase subunit B
5	 62.82	0	7673..8791	-	372	39933085	hpd	RPA0005	-	4-hydroxyphenylpyruvate dioxygenase
6	 63.12	0	8917..9396	+	159	39933086	-	RPA0006	-	AsnC family transcriptional regulator
7	 67.56	0	9442..10893	-	483	39933087	-	RPA0007	-	signal transduction histidine kinase
8	 61.05	-1	10890..11174	-	94	39933088	kaiB	RPA0008	-	circadian clock protein
9	 63.36	0	11184..12875	-	563	39933089	kaiC	RPA0009	-	circadian clock protein KaiC
10	 62.35	0	13269..13778	-	169	39933090	-	RPA0010	-	glutamate uptake transcriptional regulator
11	 71.08	+1	14266..14514	-	82	39933091	-	RPA0011	-	hypothetical protein
12	 64.52	0	14516..14701	-	61	39933092	rdxS	RPA0012	-	cytochrome oxidase maturation protein
13	 67.08	0	14692..16890	-	732	39933093	rdxI	RPA0013	-	putative cation (heavy metal) transporting ATPase
14	 64.88	0	16925..17428	-	167	39933094	rdxH	RPA0014	-	FixH family protein
15	 63.10	0	17445..18902	-	485	39933095	fixG	RPA0015	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
16	 63.61	0	19019..19900	-	293	39933096	ccoP	RPA0016	-	cytochrome c oxidase, cbb3-type, subunit III
17	 56.97	-2	19908..20072	-	54	39933097	ccoQ	RPA0017	-	Cbb3-type cytochrome oxidase component
18	 61.63	-1	20082..20816	-	244	39933098	ccoO	RPA0018	-	cytochrome c oxidase, cbb3-type, subunit II
19	 62.17	0	20829..22475	-	548	39933099	ccoN	RPA0019	-	cytochrome c oxidase, cbb3-type, subunit I
20	 67.21	0	22786..23706	-	306	39933100	panE1	RPA0020	-	2-dehydropantoate 2-reductase
21	 65.18	0	23779..24516	-	245	39933101	-	RPA0021	-	short-chain dehydrogenase/reductase SDR
22	 62.19	0	24637..25239	-	200	39933102	-	RPA0022	-	DSBA oxidoreductase
23	 64.30	0	25362..26123	+	253	39933103	gstA3	RPA0023	-	glutathione transferase
24	 64.95	0	26235..27110	-	291	39933104	-	RPA0024	-	short chain dehydrogenase
25	 67.76	0	27385..29118	-	577	39933105	ggt1	RPA0025	-	gamma-glutamyltransferase
26	 65.67	0	29224..30621	+	465	39933106	-	RPA0026	-	major facilitator transporter
27	 65.66	0	30837..31931	+	364	39933107	aroG1	RPA0027	-	phospho-2-dehydro-3-deoxyheptonate aldolase
28	 66.54	0	31989..33581	-	530	39933108	purH	RPA0028	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
29	 67.94	0	33767..35653	-	628	39933109	-	RPA0029	-	heparinase II/III-like
30	 68.96	+1	35820..37172	-	450	39933110	-	RPA0030	-	Sun/ nucleolar Nop1/Nop2
31	 64.84	0	37325..37543	+	72	39933111	-	RPA0031	-	hypothetical protein
32	 69.44	+1	37629..38204	+	191	39933112	-	RPA0032	-	nuclease-like protein
33	 64.63	0	38208..39092	-	294	39933113	-	RPA0033	-	hypothetical protein
34	 70.71	+1	39440..40897	+	485	39933114	-	RPA0034	-	twin-arginine translocation pathway signal
35	 66.96	0	40904..43315	-	803	39933115	pheT	RPA0035	-	phenylalanyl-tRNA synthetase subunit beta
36	 64.38	0	43460..43939	-	159	39933116	-	RPA0036	-	hypothetical protein
37	 64.82	0	44200..45282	-	360	39933117	pheS	RPA0037	-	phenylalanyl-tRNA synthetase subunit alpha
38	 63.33	0	45426..45785	-	119	39933118	rplT	RPA0038	-	50S ribosomal protein L20
39	 57.21	-2	45869..46069	-	66	39933119	rpmI	RPA0039	-	50S ribosomal protein L35
40	 57.51	-2	46403..46981	-	192	39933120	infC	RPA0040	-	translation initiation factor IF-3
41	 68.58	+1	47263..48048	+	261	39933121	-	RPA0041	-	hypothetical protein
42	 68.10	0	48211..49323	-	370	39933122	-	RPA0042	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
43	 65.80	0	49368..50060	-	230	39933123	-	RPA0043	-	glutathione S-transferase
44	 61.21	-1	50260..51066	+	268	39933124	uppP	RPA0044	-	undecaprenyl pyrophosphate phosphatase
45	 67.49	0	51116..52081	-	321	39933125	-	RPA0045	-	putative NADH dehydrogenase (ubiquinone) 1 alpha subcomplex
46	 64.88	0	52495..53109	+	204	39933126	-	RPA0046	-	3'-5' exonuclease
47	 65.72	0	53339..54079	+	246	39933127	-	RPA0047	-	hypothetical protein
48	 65.62	0	54088..54753	+	221	39933128	-	RPA0048	-	OstA-like protein
49	 66.46	0	54870..55835	+	321	39933129	-	RPA0049	-	possible ABC transporter ATP-binding protein (in rpoN upstream)
50	 64.24	0	56042..57688	+	548	39933130	rpoN	RPA0050	-	RNA polymerase factor sigma-54
51	 63.70	0	57746..58351	+	201	39933131	-	RPA0051	-	sigma 54 modulation protein/ribosomal protein S30EA
52	 67.75	0	58627..59088	+	153	39933132	ptsN1	RPA0052	-	PTS IIA-like nitrogen-regulatory protein PtsN
53	 63.30	0	59691..59957	-	88	39933133	-	RPA0053	-	hypothetical protein
54	 57.98	-2	60008..60433	-	141	39933134	-	RPA0054	-	heat shock protein Hsp20
55	 66.12	0	60587..61678	-	363	39933135	ugpC	RPA0055	-	glycerol-3-phosphate transporter ATP-binding subunit
56	 61.48	-1	61681..62529	-	282	39933136	ugpE	RPA0056	-	binding-protein-dependent transport systems inner membrane component
57	 60.66	-1	62529..63410	-	293	39933137	ugpA	RPA0057	-	binding-protein-dependent transport systems inner membrane component
58	 62.75	0	63575..64903	-	442	39933138	ugpB1	RPA0058	-	extracellular solute-binding protein, family 1
59	 65.17	0	65126..66331	-	401	39933139	-	RPA0059	-	L-carnitine dehydratase/bile acid-inducible protein F
60	 59.70	-1	66656..67057	-	133	39933140	-	RPA0060	-	hypothetical protein
61	 68.01	0	67198..68535	+	445	39933141	aroA	RPA0061	-	3-phosphoshikimate 1-carboxyvinyltransferase
62	 65.33	0	68539..69213	-	224	39933142	-	RPA0062	-	hypothetical protein
63	 67.14	0	69377..70015	+	212	39933143	cmk	RPA0063	-	cytidylate kinase
64	 62.84	0	70316..72013	+	565	39933144	rpsA	RPA0064	-	30S ribosomal protein S1
65	 65.65	0	72242..73222	+	326	39933145	sppA	RPA0065	-	signal peptide peptidase SppA, 36K type
66	 61.27	-1	73388..73702	+	104	39933146	ihfB	RPA0066	-	integration host factor subunit beta
67	 68.48	+1	73740..74126	+	128	39933147	-	RPA0067	-	hypothetical protein
68	 67.76	0	74185..74826	+	213	39933148	trpF	RPA0068	-	N-(5'-phosphoribosyl)anthranilate isomerase
69	 65.35	0	74840..76054	+	404	39933149	trpB	RPA0069	-	tryptophan synthase subunit beta
70	 68.34	0	76054..76890	+	278	39933150	trpA	RPA0070	-	tryptophan synthase subunit alpha
71	 66.67	0	77000..77983	+	327	39933151	accD	RPA0071	-	acetyl-CoA carboxylase subunit beta
72	 69.75	+1	77980..79308	+	442	39933152	folC	RPA0072	-	FolC bifunctional protein
73	 63.55	0	79484..79804	-	106	39933153	trxA	RPA0073	-	thioredoxin
74	 68.47	+1	79901..83386	-	1161	39933154	-	RPA0074	-	UvrD/REP helicase
75	 68.67	+1	83383..86532	-	1049	39933155	-	RPA0075	-	hypothetical protein
76	 67.22	0	86608..87330	-	240	39933156	-	RPA0076	-	nucleotidyl transferase
77	 62.46	0	87488..87796	-	102	39933157	-	RPA0077	-	hypothetical protein
78	 68.24	0	87900..89420	-	506	39933158	-	RPA0078	-	hypothetical protein
79	 66.43	0	89417..91963	-	848	39933159	-	RPA0079	-	sensor histidine kinase
80	 68.85	+1	92150..92608	-	152	39933160	dut	RPA0080	-	putative deoxyuridine 5'triphosphate nucleotidohydrolase
81	 69.93	+1	92605..93951	-	448	39933161	coaBC	RPA0081	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
82	 67.43	0	94104..95681	-	525	39933162	ubiB	RPA0082	-	2-polyprenylphenol 6-hydroxylase
83	 62.47	0	95678..96439	-	253	39933163	ubiE	RPA0083	-	ubiquinone/menaquinone biosynthesis methyltransferase
84	 67.12	0	96685..97560	+	291	39933164	mutM	RPA0084	-	formamidopyrimidine-DNA glycosylase
85	 67.56	0	97588..98931	-	447	39933165	-	RPA0085	-	peptidoglycan-binding domain 1
86	 67.67	0	99139..99939	+	266	39933166	moeB	RPA0086	-	putative molybdenum cofactor biosynthesis protein
87	 69.15	+1	100064..101752	+	562	39933167	-	RPA0087	-	major facilitator transporter
88	 64.84	0	101883..102101	-	72	39933168	-	RPA0088	-	hypothetical protein
89	 57.89	-2	102225..102566	-	113	39933169	-	RPA0089	-	hypothetical protein
90	 63.70	0	102804..103208	-	134	39933170	-	RPA0090	-	hypothetical protein
91	 66.37	0	103287..103628	-	113	39933171	-	RPA0091	-	hypothetical protein
92	 60.14	-1	104169..104444	-	91	39933172	-	RPA0092	-	hypothetical protein
93	 64.81	0	104575..105222	+	215	39933173	-	RPA0093	-	TetR family transcriptional regulator
94	 68.19	0	105219..106136	+	305	39933174	-	RPA0094	-	hypothetical protein
95	 69.81	+1	106266..107411	+	381	39933175	-	RPA0095	-	putative multidrug efflux membrane fusion protein
96	 66.29	0	107415..110564	+	1049	39933176	-	RPA0096	-	putative multidrug-efflux transport protein
97	 67.88	0	110707..111117	+	136	39933177	-	RPA0097	-	putative flagellar basal-body rod protein flgC
98	 67.42	0	111260..112318	-	352	39933178	oppF	RPA0098	-	oligopeptide ABC transporter ATP-binding protein
99	 67.37	0	112315..113313	-	332	39933179	oppD	RPA0099	-	putative oligopeptide ABC transporter ATP-binding protein
100	 68.59	+1	113316..114197	-	293	39933180	oppC	RPA0100	-	putative ABC transporter permease protein
65.23	MEAN

3.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.