IslandPath Analysis: Alkaliphilus oremlandii OhILAs



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.54   STD DEV: 3.90
Alkaliphilus oremlandii OhILAs, complete genome - 1..3123558
2836 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.28	0	49..1404	+	451	158319060	-	Clos_0001	-	chromosomal replication initiation protein
2	 34.87	0	1642..2748	+	368	158319061	-	Clos_0002	-	DNA polymerase III subunit beta
3	 33.33	0	2846..3061	+	71	158319062	-	Clos_0003	-	RNA-binding S4 domain-containing protein
4	 32.88	0	3236..4333	+	365	158319063	-	Clos_0004	-	DNA replication and repair protein RecF
5	 32.14	-1	4422..4757	+	111	158319064	-	Clos_0005	-	hypothetical protein
6	 35.85	0	4884..6794	+	636	158319065	-	Clos_0006	-	DNA gyrase, B subunit
7	 36.46	0	6807..9266	+	819	158319066	-	Clos_0007	-	DNA gyrase, A subunit
8	 24.53	-2	9496..9813	+	105	158319067	-	Clos_0008	-	anti-sigma-factor antagonist
9	 34.50	0	9821..10249	+	142	158319068	-	Clos_0009	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
10	 32.10	-1	10249..11061	+	270	158319069	-	Clos_0010	-	FliA/WhiG family RNA polymerase sigma factor
11	 32.37	-1	16349..16867	+	172	158319070	-	Clos_0011	-	3H domain-containing protein
12	 40.78	+1	16911..17957	+	348	158319071	-	Clos_0012	-	phosphotransferase system, EIIC
13	 30.26	-1	18122..18316	-	64	158319072	-	Clos_0013	-	hypothetical protein
14	 37.79	0	18900..20177	+	425	158319073	-	Clos_0014	-	seryl-tRNA synthetase
15	 25.60	-2	20282..20449	+	55	158319074	-	Clos_0015	-	hypothetical protein
16	 38.09	0	20878..22308	+	476	158319075	-	Clos_0016	-	peptidase S41
17	 40.00	0	22464..22763	+	99	158319076	-	Clos_0017	-	YCII-related
18	 36.77	0	22876..23340	+	154	158319077	-	Clos_0018	-	CMP/dCMP deaminase zinc-binding
19	 35.02	0	23941..24945	+	334	158319078	-	Clos_0019	-	lipoyltransferase and lipoate-protein ligase
20	 34.04	0	25004..26275	-	423	158319079	-	Clos_0020	-	hypothetical protein
21	 33.88	0	26419..26781	-	120	158319080	-	Clos_0021	-	hypothetical protein
22	 33.17	0	27112..27720	+	202	158319081	-	Clos_0022	-	SirA family protein
23	 34.07	0	27736..28005	+	89	158319082	-	Clos_0023	-	hypothetical protein
24	 37.57	0	28022..28210	+	62	158319083	-	Clos_0024	-	hypothetical protein
25	 34.86	0	28424..29599	+	391	158319084	-	Clos_0025	-	GntR family transcriptional regulator
26	 31.17	-1	29851..31608	+	585	158319085	-	Clos_0026	-	PAS modulated sigma54 specific transcriptional regulator
27	 38.13	0	31947..33113	+	388	158319086	-	Clos_0027	-	respiratory-chain NADH dehydrogenase domain-containing protein
28	 36.31	0	33239..35122	+	627	158319087	-	Clos_0028	-	glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits
29	 30.88	-1	35154..35438	+	94	158319088	-	Clos_0029	-	hypothetical protein
30	 41.18	+1	35419..36144	+	241	158319089	-	Clos_0030	-	D-proline reductase (dithiol)
31	 34.51	0	36201..36962	+	253	158319090	-	Clos_0031	-	D-proline reductase (dithiol)
32	 37.37	0	36977..37447	+	156	158319091	-	Clos_0032	-	D-proline reductase (dithiol)
33	 35.32	0	37448..38455	+	335	158319092	-	Clos_0033	-	proline racemase
34	 35.92	0	38545..39432	+	295	158319093	-	Clos_0034	-	membrane protein
35	 30.18	-1	39789..40073	+	94	158319094	-	Clos_0035	-	ribosomal protein S6
36	 40.34	0	40093..40506	+	137	158319095	-	Clos_0036	-	single-strand binding protein
37	 29.11	-1	40522..40758	+	78	158319096	-	Clos_0037	-	ribosomal protein S18
38	 37.12	0	40868..42715	-	615	158319097	-	Clos_0038	-	ABC transporter related
39	 38.04	0	42696..44522	-	608	158319098	-	Clos_0039	-	ABC transporter related
40	 34.68	0	44755..45642	-	295	158319099	-	Clos_0040	-	signal transduction histidine kinase regulating citrate/malate metabolism
41	 34.45	0	45639..46355	-	238	158319100	-	Clos_0041	-	LytTR family two component transcriptional regulator
42	 38.44	0	46667..47527	+	286	158319101	-	Clos_0042	-	shikimate 5-dehydrogenase
43	 36.93	0	47677..48093	+	138	158319102	-	Clos_0043	-	hypothetical protein
44	 32.32	-1	48196..48789	+	197	158319103	-	Clos_0044	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
45	 33.85	0	48996..49571	+	191	158319104	-	Clos_0045	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
46	 33.33	0	55320..55952	-	210	158319105	-	Clos_0046	-	hypothetical protein
47	 36.65	0	56775..57257	+	160	158319106	-	Clos_0047	-	hypothetical protein
48	 36.60	0	57367..59235	+	622	158319107	-	Clos_0048	-	putative sigma54 specific transcriptional regulator
49	 40.52	+1	59560..61341	+	593	158319108	-	Clos_0049	-	thiamine pyrophosphate binding domain-containing protein
50	 38.92	0	61343..61933	+	196	158319109	-	Clos_0050	-	indolepyruvate oxidoreductase subunit B
51	 35.15	0	62147..62860	+	237	158319110	-	Clos_0051	-	uncharacterized membrane protein
52	 37.43	0	68709..70196	+	495	158319111	-	Clos_0052	-	methyl-accepting chemotaxis sensory transducer
53	 31.41	-1	70382..70693	+	103	158319112	-	Clos_0053	-	hypothetical protein
54	 40.33	0	70950..73409	+	819	158319113	-	Clos_0054	-	copper-translocating P-type ATPase
55	 39.35	0	73505..73720	+	71	158319114	-	Clos_0055	-	copper ion binding protein
56	 37.04	0	73869..76433	+	854	158319115	-	Clos_0056	-	AraC family transcriptional regulator
57	 39.61	0	76529..77548	-	339	158319116	-	Clos_0057	-	aminodeoxychorismate lyase
58	 33.33	0	77817..78884	+	355	158319117	-	Clos_0058	-	acyltransferase 3
59	 40.37	0	80271..81719	+	482	158319118	-	Clos_0059	-	Orn/Lys/Arg decarboxylase major region
60	 39.65	0	81740..82372	+	210	158319119	-	Clos_0060	-	dTMP kinase
61	 32.73	0	82377..82706	+	109	158319120	-	Clos_0061	-	hypothetical protein
62	 35.76	0	82725..83714	+	329	158319121	-	Clos_0062	-	DNA polymerase III, delta prime subunit
63	 37.63	0	83708..84592	+	294	158319122	-	Clos_0063	-	PSP1 domain-containing protein
64	 39.95	0	84900..86153	+	417	158319123	-	Clos_0064	-	putative oxidoreductase
65	 38.57	0	86842..87948	+	368	158319124	-	Clos_0065	-	glycine cleavage system aminomethyltransferase T
66	 38.02	0	87991..88374	+	127	158319125	-	Clos_0066	-	glycine cleavage system H protein
67	 39.15	0	88376..89716	+	446	158319126	-	Clos_0067	-	glycine dehydrogenase subunit 1
68	 38.74	0	89716..91176	+	486	158319127	-	Clos_0068	-	glycine dehydrogenase subunit 2
69	 39.42	0	91313..93415	+	700	158319128	-	Clos_0069	-	putative sigma54 specific transcriptional regulator
70	 42.83	+1	93603..95381	+	592	158319129	-	Clos_0070	-	indolepyruvate ferredoxin oxidoreductase
71	 43.18	+1	95383..95961	+	192	158319130	-	Clos_0071	-	indolepyruvate oxidoreductase subunit B
72	 39.91	0	95997..97061	+	354	158319131	-	Clos_0072	-	butyrate kinase
73	 37.90	0	97091..98206	+	371	158319132	-	Clos_0073	-	histidinol-phosphate aminotransferase
74	 37.35	0	98781..99974	+	397	158319133	-	Clos_0074	-	putative PAS/PAC sensor protein
75	 34.03	0	100086..100802	+	238	158319134	-	Clos_0075	-	methyltransferase type 11
76	 35.72	0	100814..101692	+	292	158319135	-	Clos_0076	-	hypothetical protein
77	 35.66	0	101842..102444	-	200	158319136	-	Clos_0077	-	pentapeptide repeat-containing protein
78	 40.25	0	103112..104008	+	298	158319137	-	Clos_0078	-	5,10-methylenetetrahydrofolate reductase
79	 39.29	0	104052..104723	+	223	158319138	-	Clos_0079	-	vitamin B12 dependent methionine synthase activation region
80	 43.00	+1	104803..107181	+	792	158319139	-	Clos_0080	-	homocysteine S-methyltransferase
81	 38.27	0	107279..108595	-	438	158319140	-	Clos_0081	-	membrane protein-like protein
82	 37.69	0	108588..108908	-	106	158319141	-	Clos_0082	-	PadR-like family transcriptional regulator
83	 38.68	0	109064..109999	-	311	158319142	-	Clos_0083	-	alpha/beta hydrolase fold
84	 43.51	+1	110205..111383	+	392	158319143	-	Clos_0084	-	acetyl-CoA acetyltransferase
85	 36.39	0	111488..112957	+	489	158319144	-	Clos_0085	-	PAS modulated sigma54 specific transcriptional regulator
86	 40.93	+1	113253..114806	+	517	158319145	-	Clos_0086	-	coenzyme A transferase
87	 40.85	+1	114821..116137	+	438	158319146	-	Clos_0087	-	citrate transporter
88	 37.49	0	116245..117087	+	280	158319147	-	Clos_0088	-	3-hydroxybutyryl-CoA dehydrogenase
89	 40.08	0	117132..117872	+	246	158319148	-	Clos_0089	-	short-chain dehydrogenase/reductase SDR
90	 37.17	0	118268..118684	+	138	158319149	-	Clos_0090	-	dehydratase
91	 42.37	+1	118721..119860	+	379	158319150	-	Clos_0091	-	acyl-CoA dehydrogenase domain-containing protein
92	 40.74	+1	119874..120656	+	260	158319151	-	Clos_0092	-	electron transfer flavoprotein alpha/beta-subunit
93	 41.82	+1	120671..121672	+	333	158319152	-	Clos_0093	-	electron transfer flavoprotein alpha subunit
94	 32.02	-1	121751..122512	-	253	158319153	-	Clos_0094	-	hypothetical protein
95	 36.48	0	122783..123481	+	232	158319154	-	Clos_0095	-	two component transcriptional regulator
96	 37.79	0	123483..124874	+	463	158319155	-	Clos_0096	-	integral membrane sensor signal transduction histidine kinase
97	 36.27	0	124875..126443	+	522	158319156	-	Clos_0097	-	hypothetical protein
98	 53.94	+2	126494..126823	-	109	158319157	-	Clos_0098	-	hypothetical protein
99	 51.66	+2	127238..128383	+	381	158319158	-	Clos_0099	-	triple helix repeat-containing collagen
100	 50.87	+2	128668..129990	+	440	158319159	-	Clos_0100	-	triple helix repeat-containing collagen
36.54	MEAN

3.90	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.