IslandPath Analysis: Methanocaldococcus jannaschii DSM 2661



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.69   STD DEV: 3.75
Methanocaldococcus jannaschii DSM 2661, complete genome - 1..1664970
1729 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.69	0	2216..3343	-	375	15668173	-	MJ0001	-	aspartate aminotransferase (aspB1)
2	 31.69	0	3340..4071	-	243	15668174	-	MJ0002	-	hypothetical protein
3	 26.54	-1	4911..5381	+	156	15668175	-	MJ0003	-	hypothetical protein
4	 31.56	0	5378..6109	+	243	15668176	-	MJ0004	-	(R)-2-hydroxyglutaryl-CoA dehydratase activator
5	 35.18	0	6111..7250	-	379	15668177	-	MJ0005	-	formate dehydrogenase, beta subunit
6	 32.63	0	7338..8474	-	378	15668178	-	MJ0006	-	formate dehydrogenase, alpha subunit
7	 34.49	0	8884..10005	+	373	15668179	-	MJ0007	-	2-hydroxyglutaryl-CoA dehydratase, subunit beta (hgdB)
8	 30.77	0	10075..10737	+	220	15668180	-	MJ0008	-	hypothetical protein
9	 32.37	0	10743..11573	+	276	15668181	-	MJ0009	-	hypothetical protein
10	 33.64	0	11581..12867	+	428	15668182	-	MJ0010	-	BcpC phosphonopyruvate decarboxylase
11	 29.46	0	12869..13462	+	197	15668183	-	MJ0011	-	hypothetical protein
12	 34.98	0	13424..14332	-	302	15669879	-	MJ0012m	-	transposase-related protein
13	 31.29	0	14348..14836	-	162	15668184	-	MJ0013	-	hypothetical protein
14	 32.87	0	14817..15458	-	213	15668185	-	MJ0014	-	hypothetical protein
15	 31.99	0	15511..15807	+	98	15668186	-	MJ0015	-	hypothetical protein
16	 32.20	0	16240..16416	-	58	15668187	-	MJ0016	-	hypothetical protein
17	 33.18	0	16806..17450	+	214	15668188	-	MJ0017	-	transposase, IS240
18	 28.19	0	17658..19232	+	524	15668189	-	MJ0018	-	hypothetical protein
19	 34.39	0	19229..21121	-	630	15668190	-	MJ0019	-	glutamyl-tRNA(Gln) amidotransferase subunit E
20	 33.49	0	21148..22401	-	417	15668191	-	MJ0020	-	glutamyl-tRNA(Gln) amidotransferase subunit D
21	 31.03	0	22762..23889	+	375	15668192	-	MJ0021	-	hypothetical protein
22	 30.39	0	24003..25091	+	362	15668193	cbiD	MJ0022	-	cobalt-precorrin-6A synthase
23	 26.05	-1	25284..25640	+	118	15668194	-	MJ0023	-	hypothetical protein
24	 27.86	-1	25686..26105	-	139	15668195	-	MJ0024	-	hypothetical protein
25	 32.35	0	26106..27122	-	338	15668196	-	MJ0025	-	RNA 3'-terminal-phosphate cyclase
26	 27.64	-1	27134..27958	-	274	15668197	-	MJ0026	-	proliferating cell nuclear antigen
27	 25.59	-1	28018..28572	-	184	15668198	-	MJ0027	-	hypothetical protein
28	 32.08	0	28514..29473	-	319	15668199	-	MJ0028	-	thiamine monphosphate kinase (thiL)
29	 37.50	+1	29838..31085	+	415	15669896	-	MJ0029	-	coenzyme F420-reducing hydrogenase, alpha subunit, selenocysteine-containing
30	 33.33	0	31255..31806	+	183	15668200	-	MJ0030	-	coenzyme F420-reducing hydrogenase, delta subunit (frcD)
31	 38.96	+1	31799..32491	+	230	15668201	-	MJ0031	-	coenzyme F420-reducing hydrogenase, gamma subunit
32	 37.04	+1	32511..33374	+	287	15668202	-	MJ0032	-	coenzyme F420-reducing hydrogenase subunit beta
33	 34.69	0	33629..35248	+	539	15668203	sdhA	MJ0033	-	succinate dehydrogenase flavoprotein subunit
34	 34.28	0	35437..36387	-	316	15668204	-	MJ0034	-	hypothetical protein
35	 34.53	0	36529..37281	-	250	15668205	-	MJ0035	-	ABC transporter subunit
36	 38.96	+1	37551..38012	+	153	15668206	rps15p	MJ0036	-	30S ribosomal protein S15P
37	 29.01	0	38073..38789	+	238	15668207	-	MJ0037	-	hypothetical protein
38	 30.28	0	38790..39443	-	217	15668208	-	MJ0038	-	hypothetical protein
39	 31.61	0	39651..39998	-	115	15668209	-	MJ0039	-	hypothetical protein
40	 37.04	+1	40098..40394	-	98	15668210	-	MJ0040	-	50S ribosomal protein L21e
41	 31.28	0	40474..41838	-	454	15668211	-	MJ0041	-	hypothetical protein
42	 31.64	0	41880..42527	-	215	15668212	-	MJ0042	-	hypothetical protein
43	 31.98	0	42755..45112	+	785	15668213	-	MJ0043	-	hypothetical protein
44	 29.50	0	45117..45899	-	260	15668214	-	MJ0044	-	hypothetical protein
45	 26.73	-1	45904..46569	-	221	15668215	-	MJ0045	-	hypothetical protein
46	 28.24	0	46566..47351	-	261	15668216	-	MJ0046	-	hypothetical protein
47	 31.39	0	47370..48656	-	428	15668217	-	MJ0047	-	putative mRNA 3'-end processing factor 1
48	 33.65	0	48846..49163	+	105	15668218	-	MJ0047.1	-	hypothetical protein
49	 32.75	0	49516..50202	-	228	15668219	-	MJ0048	-	translation initiation factor IF-6
50	 33.71	0	50206..50469	-	87	15668220	-	MJ0049	-	50S ribosomal protein L31e
51	 32.83	0	51047..52237	-	396	15668221	-	MJ0050	-	L-tyrosine decarboxylase
52	 37.07	+1	52347..52694	+	115	15668222	-	MJ0051	-	peptidyl-tRNA hydrolase
53	 30.94	0	52706..53374	-	222	15668223	-	MJ0052	-	hypothetical protein
54	 27.34	-1	53385..54068	-	227	15668224	-	MJ0053	-	hypothetical protein
55	 31.80	0	54156..55001	-	281	15668225	-	MJ0054	-	hypothetical protein
56	 32.31	0	55080..55763	-	227	15668226	ribB	MJ0055	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
57	 28.95	0	55756..56166	-	136	15668227	rfk	MJ0056	-	riboflavin kinase
58	 34.04	0	56182..57462	-	426	15668228	-	MJ0057	-	Na+/H+ antiporter
59	 37.59	+1	57588..58763	-	391	15668229	-	MJ0058	-	ammonium transporter (amtB)
60	 37.46	+1	58979..59317	+	112	15668230	-	MJ0059	-	nitrogen regulatory protein P-II (glnB)
61	 32.02	0	59467..60225	+	252	15668231	-	MJ0060	-	methylthioadenosine phosphorylase (mtaP)
62	 24.28	-1	60363..60605	+	80	15668232	-	MJ0061	-	ferredoxin
63	 29.01	0	60618..61241	+	207	15668233	-	MJ0062	-	hypothetical protein
64	 24.73	-1	61313..61858	+	181	15668234	-	MJ0063	-	hypothetical protein
65	 25.96	-1	61888..62457	+	189	15668235	-	MJ0064	-	hypothetical protein
66	 29.49	0	62460..63551	-	363	15668236	-	MJ0065	-	hypothetical protein
67	 31.53	0	63654..65096	-	480	15668237	-	MJ0066	-	hypothetical protein
68	 33.01	0	65160..65471	+	103	15668238	-	MJ0067	-	hypothetical protein
69	 33.62	0	65514..65861	-	115	15668239	-	MJ0068	-	hypothetical protein
70	 36.99	+1	66007..66909	+	300	15668240	-	MJ0069	-	acetylglutamate kinase
71	 28.92	0	66966..67214	+	82	15668241	-	MJ0070	-	hypothetical protein
72	 26.74	-1	67211..67483	+	90	15668242	-	MJ0071	-	hypothetical protein
73	 28.15	0	67562..67696	+	44	15668243	-	MJ0072	-	hypothetical protein
74	 28.01	0	67729..68010	+	93	15668244	-	MJ0073	-	hypothetical protein
75	 27.86	-1	68013..69089	-	358	15668245	-	MJ0074	-	hypothetical protein
76	 30.15	0	69233..70330	-	365	15668246	-	MJ0075	-	hypothetical protein
77	 29.59	0	70391..71539	-	382	15668247	-	MJ0077	-	hypothetical protein
78	 30.12	0	71620..71961	+	113	15668248	-	MJ0076	-	hypothetical protein
79	 26.44	-1	72051..72674	-	207	15668249	-	MJ0078	-	hypothetical protein
80	 29.75	0	72664..73806	-	380	15668250	-	MJ0079	-	regulatory protein, putative (moxR)
81	 32.03	0	73799..74182	-	127	15668251	-	MJ0080	-	hypothetical protein
82	 39.73	+2	74670..76013	+	447	15668252	-	MJ0081	-	methyl coenzyme M reductase II, subunit beta (mrtB)
83	 38.33	+1	76026..76826	+	266	15668253	-	MJ0082	-	methyl coenzyme M reductase II, subunit gamma (mtrG)
84	 39.90	+2	76826..78484	+	552	15668254	-	MJ0083	-	methyl coenzyme M reductase II, subunit alpha (mtrA)
85	 32.67	0	78746..79495	+	249	15668255	-	MJ0084	-	CODH nickel-insertion accessory protein (cooC)
86	 35.29	0	79630..80751	+	373	15668256	-	MJ0085	-	iron transport periplasmic binding protein, putative (ceuE)
87	 30.21	0	80788..81906	+	372	15668257	-	MJ0086	-	unspecified methyltransferase
88	 36.38	+1	81930..82979	+	349	15668258	-	MJ0087	-	hemin permease (hemU)
89	 25.97	-1	82998..83540	+	180	15668259	-	MJ0088	-	hypothetical protein
90	 31.90	0	83541..84305	+	254	15668260	-	MJ0089	-	ferric enterobactin transport ATP-binding protein
91	 33.17	0	84386..85609	+	407	15668261	-	MJ0090	-	collagenase (prtC)
92	 34.54	0	85705..86613	+	302	15668262	-	MJ0091	-	Na+/Ca+ exchanger protein, putative
93	 34.97	0	86613..88082	+	489	15668263	-	MJ0092	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
94	 28.67	0	88089..88517	-	142	15668264	-	MJ0093	-	hypothetical protein
95	 34.62	0	88561..89493	-	310	15668265	-	MJ0094	-	methyl coenzyme M reductase II, operon protein C (mtrC)
96	 31.23	0	89565..89945	-	126	15668266	-	MJ0095	-	hypothetical protein
97	 28.90	0	89964..90752	-	262	15668267	-	MJ0096	-	hypothetical protein
98	 33.80	0	91045..91476	-	143	15668268	-	MJ0097	-	translation initiation factor IF-2 subunit beta
99	 32.80	0	91672..91857	-	61	15668269	rpl37e	MJ0098	-	50S ribosomal protein L37e
100	 32.58	0	92902..93297	-	131	15668270	-	MJ0099	-	ferredoxin II
31.69	MEAN

3.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.