IslandPath Analysis: Candidatus Phytoplasma mali



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 22.46   STD DEV: 4.02
Candidatus Phytoplasma mali, complete genome - 1..601943
479 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 20.11	0	1237..1425	+	62	194246404	-	ATP_00001	-	hypothetical protein
2	 15.93	-1	1694..2239	-	181	194246405	-	ATP_00002	-	hypothetical protein
3	 24.75	0	2412..3506	-	364	194246406	znuB	ATP_00003	-	ABC-type Mn/Zn transport system, permease component, fragment
4	 22.35	0	3513..4586	-	357	194246407	znuB	ATP_00004	-	ABC-type Mn/Zn transport system, permease component, fragment
5	 28.92	+1	4588..5334	-	248	194246408	znuC	ATP_00005	-	ABC-type Mn/Zn transport system, ATPase component
6	 24.77	0	5389..6462	-	357	194246409	znuA	ATP_00006	-	ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding protein
7	 22.22	0	8055..8774	-	239	194246410	-	ATP_00007	-	hypothetical protein
8	 29.85	+1	8879..9595	-	238	194246411	-	ATP_00008	-	hypothetical protein
9	 24.88	0	10623..11426	-	267	194246412	-	ATP_00009	-	hypothetical protein
10	 19.92	0	11918..12655	-	245	194246413	-	ATP_00010	-	hypothetical protein
11	 29.02	+1	12875..13987	-	370	194246414	hflB	ATP_00011	-	putative ATP-dependent Zn protease
12	 18.25	-1	14455..14865	+	136	194246415	-	ATP_00012	-	hypothetical protein
13	 26.00	0	15671..17320	-	549	194246416	phnL	ATP_00013	-	ABC transporter, ATPase component
14	 18.65	0	17804..18382	-	192	194246417	-	ATP_00014	-	hypothetical protein
15	 19.15	0	18677..19381	-	234	194246418	-	ATP_00015	-	hypothetical protein
16	 24.85	0	19482..20978	-	498	194246419	-	ATP_00016	-	Zn-dependent carboxypeptidase
17	 25.47	0	21348..23597	-	749	194246420	-	ATP_00017	-	hypothetical protein
18	 18.42	-1	23869..24639	-	256	194246421	-	ATP_00018	-	hypothetical protein
19	 24.89	0	25381..26754	-	457	194246422	mleP	ATP_00019	-	Malate/Na+ symporter
20	 23.62	0	27194..27934	-	246	194246423	-	ATP_00020	-	hypothetical protein
21	 25.17	0	28556..29131	-	191	194246424	-	ATP_00021	-	hypothetical protein
22	 17.44	-1	29247..29441	-	64	194246425	-	ATP_00022	-	hypothetical protein
23	 24.69	0	29863..30672	-	269	194246426	-	ATP_00023	-	hypothetical protein
24	 15.92	-1	30944..31144	-	66	194246427	-	ATP_00024	-	hypothetical protein
25	 32.37	+2	31292..31603	-	103	194246428	-	ATP_00025	-	hypothetical protein
26	 25.15	0	32137..34494	-	785	194246429	-	ATP_00026	-	N-6 DNA methylase
27	 30.20	+1	34675..35535	-	286	194246430	nfo	ATP_00027	-	Endonuclease IV
28	 24.48	0	35528..36724	-	398	194246431	srmB	ATP_00028	-	Superfamily II DNA and RNA helicase
29	 21.68	0	36836..37264	-	142	194246432	nusB	ATP_00029	-	Transcription termination factor
30	 25.69	0	37315..37929	-	204	194246433	sodA	ATP_00030	-	Superoxide dismutase
31	 27.11	+1	38278..38952	+	224	194246434	adk	ATP_00031	-	Adenylate kinase (ATP-AMP transphosphorylase)
32	 17.02	-1	39204..39908	-	234	194246435	-	ATP_00032	-	hypothetical protein
33	 21.97	0	41011..41811	+	266	194246436	-	ATP_00033	-	hypothetical protein
34	 32.17	+2	42209..44011	-	600	194246437	hflB	ATP_00034	-	ATP-dependent Zn protease
35	 19.51	0	44064..45872	-	602	194246438	-	ATP_00035	-	hypothetical protein
36	 23.47	0	46028..46666	-	212	194246439	-	ATP_00036	-	hypothetical protein
37	 22.88	0	47212..47871	-	219	194246440	-	ATP_00037	-	hypothetical protein
38	 21.34	0	47930..50839	-	969	194246441	-	ATP_00038	-	hypothetical protein
39	 24.93	0	50930..52333	-	467	194246442	hflB	ATP_00039	-	similar to ATP-dependent Zn protease
40	 19.38	0	52358..53260	-	300	194246443	-	ATP_00040	-	hypothetical protein
41	 19.81	0	53309..54757	-	482	194246444	-	ATP_00041	-	hypothetical protein
42	 20.74	0	55362..56624	-	420	194246445	pepP	ATP_00042	-	Xaa-Pro aminopeptidase
43	 19.10	0	57032..58774	+	580	194246446	dnaX	ATP_00043	-	DNA polymerase III
44	 23.16	0	58793..59077	+	94	194246447	-	ATP_00044	-	hypothetical protein
45	 23.19	0	59080..59700	+	206	194246448	recR	ATP_00045	-	Recombinational DNA repair protein
46	 18.10	-1	59697..60044	+	115	194246449	rpoE	ATP_00046	-	Putative DNA-directed RNA polymerase, delta subunit
47	 21.24	0	60176..60919	+	247	194246450	pssA	ATP_00047	-	CDP-diacylglycerol-serine O-phosphatidyltransferase
48	 17.69	-1	60932..61807	+	291	194246451	psd	ATP_00048	-	Phosphatidylserine decarboxylase
49	 24.23	0	61804..63429	+	541	194246452	pyrG	ATP_00049	-	CTP synthase (UTP-ammonia ligase)
50	 26.31	0	63524..64021	-	165	194246453	-	ATP_00050	-	Immunodominant membrane protein
51	 16.91	-1	64172..64786	-	204	194246454	dnaD	ATP_00051	-	DNA replication protein
52	 24.63	0	64779..65456	-	225	194246455	rnc	ATP_00052	-	DsRNA-specific ribonuclease
53	 24.31	0	65437..66489	-	350	194246456	plsX	ATP_00053	-	Fatty acid/phospholipid biosynthesis enzyme
54	 20.26	0	66563..68443	-	626	194246457	recG	ATP_00054	-	ATP-dependent DNA helicase
55	 18.48	0	69160..69819	+	219	194246458	-	ATP_00055	-	hypothetical protein
56	 16.69	-1	70439..72409	+	656	194246459	-	ATP_00056	-	hypothetical protein
57	 20.83	0	73519..73710	-	63	194246460	-	ATP_00057	-	hypothetical protein
58	 22.40	0	73792..73974	-	60	194246461	-	ATP_00058	-	hypothetical protein
59	 20.89	0	75043..75468	-	141	194246462	-	ATP_00061	-	hypothetical protein
60	 25.78	0	75693..76142	-	149	194246463	-	ATP_00062	-	hypothetical protein
61	 21.71	0	76938..77522	-	194	194246464	-	ATP_00063	-	hypothetical protein
62	 23.47	0	77564..78496	-	310	194246465	dppD	ATP_00064	-	ABC-type dipeptide/oligopeptide transport system, ATPase component
63	 20.55	0	78514..79788	-	424	194246466	dppF	ATP_00065	-	putative dipeptide transport ATP-binding protein
64	 24.47	0	79805..80650	-	281	194246467	dppC	ATP_00066	-	ABC-type dipeptide transport system, permease protein
65	 22.04	0	80671..81600	-	309	194246468	dppB	ATP_00067	-	ABC-type dipeptide/oligopeptide transport system, permease component
66	 24.17	0	81717..83342	-	541	194246469	dppA	ATP_00068	-	ABC-type dipeptide-binding protein, solute binding protein
67	 19.73	0	83711..84511	-	266	194246470	dnaC	ATP_00069	-	DNA replication protein
68	 19.89	0	84515..85741	-	408	194246471	dnaB2	ATP_00070	-	Replicative DNA helicase DnaB-like
69	 22.14	0	85757..86569	-	270	194246472	nei	ATP_00071	-	Formamidopyrimidine-DNA glycosylase
70	 22.18	0	86622..87509	-	295	194246473	polA	ATP_00072	-	DNA polymerase I
71	 23.71	0	87546..88916	-	456	194246474	ffh	ATP_00073	-	Signal recognition particle, subunit FFH/SRP54
72	 21.03	0	88964..89938	-	324	194246475	ftsY	ATP_00074	-	Signal recognition particle-docking protein
73	 22.83	0	89985..91784	-	599	194246476	topA	ATP_00075	-	DNA topoisomerase I
74	 18.85	0	91824..92693	-	289	194246477	-	ATP_00076	-	hypothetical protein
75	 16.86	-1	92741..93523	-	260	194246478	-	ATP_00077	-	hypothetical protein
76	 20.55	0	93847..94761	-	304	194246479	engC	ATP_00078	-	Probable GTPase EngC
77	 18.95	0	94831..97242	-	803	194246480	pheT	ATP_00079	-	Phenylalanyl-tRNA synthetase beta chain
78	 22.32	0	97271..98296	-	341	194246481	pheS	ATP_00080	-	Phenylalanyl-tRNA synthetase alpha chain
79	 21.84	0	98388..102956	-	1522	194246482	polC1	ATP_00081	-	DNA polymerase III alpha subunit
80	 18.18	-1	103291..104049	-	252	194246483	-	ATP_00082	-	hypothetical protein
81	 24.48	0	104806..106002	-	398	194246484	rfaG	ATP_00083	-	1,2-diacylglycerol 3-glucosyltransferase
82	 16.75	-1	106306..106920	+	204	194246485	-	ATP_00084	-	hypothetical protein
83	 18.22	-1	107015..107788	+	257	194246486	pgpB	ATP_00085	-	probable membrane-associated phospholipid phosphatase
84	 17.40	-1	108293..112546	-	1417	194246487	-	ATP_00086	-	hypothetical protein
85	 23.23	0	114090..117662	+	1190	194246488	-	ATP_00087	-	weakly similar to IcmE protein
86	 22.53	0	118592..119248	-	218	194246489	-	ATP_00088	-	hypothetical protein
87	 30.69	+2	119353..120072	-	239	194246490	-	ATP_00089	-	hypothetical protein
88	 20.66	0	120241..120453	-	70	194246491	-	ATP_00090	-	hypothetical protein
89	 16.07	-1	120732..120899	-	55	194246492	-	ATP_00091	-	hypothetical protein
90	 21.32	0	121448..122479	-	343	194246493	trpS	ATP_00092	-	Tryptophanyl-tRNA synthetase
91	 22.22	0	122661..123245	-	194	194246494	-	ATP_00093	-	hypothetical protein
92	 19.75	0	123660..124535	+	291	194246495	degV	ATP_00094	-	Uncharacterized BCR
93	 19.75	0	124755..125630	+	291	194246496	degV	ATP_00095	-	Uncharacterized BCR
94	 23.29	0	125686..127179	+	497	194246497	lysU	ATP_00096	-	Lysyl-tRNA synthetase
95	 18.89	0	127224..129986	+	920	194246498	dnaE	ATP_00097	-	DNA polymerase III, alpha subunit
96	 22.45	0	130023..130454	+	143	194246499	-	ATP_00098	-	hypothetical protein
97	 23.81	0	130543..131634	-	363	194246500	prfB	ATP_00099	-	Bacterial peptide chain release factor 2
98	 23.10	0	131731..134124	-	797	194246501	secA	ATP_00100	-	Preprotein translocase subunit
99	 25.57	0	134217..135851	-	544	194246502	phnL	ATP_00101	-	ABC transporter, ATPase component
100	 16.92	-1	136065..136655	-	196	194246503	-	ATP_00102	-	hypothetical protein
22.46	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.