IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.15   STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.91	0	1..1323	+	440	184152656	-	LAR_0001	-	chromosomal replication initiator protein DnaA
2	 36.75	0	1499..2641	+	380	184152657	-	LAR_0002	-	DNA polymerase III beta subunit
3	 39.13	0	2903..3109	+	68	184152658	-	LAR_0003	-	hypothetical protein
4	 38.58	0	3118..4242	+	374	184152659	-	LAR_0004	-	DNA replication and repair protein RecF
5	 41.28	0	4239..6188	+	649	184152660	-	LAR_0005	-	DNA gyrase subunit B
6	 38.96	0	6231..8735	+	834	184152661	-	LAR_0006	-	DNA gyrase subunit A
7	 39.73	0	8938..9234	+	98	184152662	-	LAR_0007	-	30S ribosomal protein S6
8	 42.02	0	9272..9835	+	187	184152663	-	LAR_0008	-	single-strand binding protein
9	 47.26	+2	9869..10105	+	78	184152664	-	LAR_0009	-	30S ribosomal protein S18
10	 38.29	0	10322..12340	+	672	184152665	-	LAR_0010	-	hypothetical protein
11	 40.62	0	12346..12798	+	150	184152666	-	LAR_0011	-	50S ribosomal protein L9
12	 40.73	0	12832..14223	+	463	184152667	-	LAR_0012	-	replicative DNA helicase DnaC
13	 37.49	0	14345..15547	+	400	184152668	-	LAR_0013	-	transport protein
14	 37.85	0	15985..16869	+	294	184152669	-	LAR_0014	-	hypothetical protein
15	 30.65	-2	16899..17456	-	185	184152670	-	LAR_0015	-	hypothetical protein
16	 34.25	-1	18058..18492	+	144	184152671	-	LAR_0016	-	hypothetical protein
17	 38.62	0	18580..20301	+	573	184152672	-	LAR_0017	-	multidrug ABC transporter ATP-binding and permease components
18	 41.38	0	20645..21352	+	235	184152673	-	LAR_0018	-	two-component response regulator
19	 38.42	0	21366..23231	+	621	184152674	-	LAR_0019	-	two-component sensor histidine kinase
20	 39.89	0	23209..24504	+	431	184152675	-	LAR_0020	-	hypothetical protein
21	 36.42	0	24517..25359	+	280	184152676	-	LAR_0021	-	hypothetical protein
22	 42.38	0	25377..26183	+	268	184152677	-	LAR_0022	-	hydrolase
23	 38.57	0	26318..27559	+	413	184152678	-	LAR_0023	-	serine protease
24	 38.15	0	27788..28285	+	165	184152679	-	LAR_0024	-	low temperature requirement C protein
25	 39.21	0	28594..29580	+	328	184152680	-	LAR_0025	-	hypothetical protein
26	 34.38	-1	30049..30528	+	159	184152681	-	LAR_0026	-	hypothetical protein
27	 37.44	0	30671..30889	+	72	184152682	-	LAR_0027	-	hypothetical protein
28	 38.67	0	30957..31499	+	180	184152683	-	LAR_0028	-	hypothetical protein
29	 41.18	0	31718..32890	+	390	184152684	-	LAR_0029	-	1,3-propanediol dehydrogenase
30	 36.02	0	33254..33997	+	247	184152685	-	LAR_0030	-	putative sugar uptake protein
31	 38.61	0	34112..34888	-	258	184152686	-	LAR_0031	-	hypothetical protein
32	 41.45	0	34890..35702	-	270	184152687	-	LAR_0032	-	pyrroline-5-carboxylate reductase
33	 40.54	0	36003..37376	+	457	184152688	-	LAR_0033	-	succinate-semialdehyde dehydrogenase
34	 40.07	0	37552..38634	+	360	184152689	-	LAR_0034	-	hypothetical protein
35	 38.48	0	38636..39334	+	232	184152690	-	LAR_0035	-	putative ABC transporter ATP-binding component
36	 38.92	0	39321..40556	+	411	184152691	-	LAR_0036	-	putative ABC transporter permease component
37	 41.99	0	40749..41210	+	153	184152692	-	LAR_0037	-	hypothetical protein
38	 36.70	0	41546..42940	+	464	184152693	-	LAR_0038	-	hypothetical protein
39	 43.12	+1	43789..44217	-	142	184152694	-	LAR_0039	-	hypothetical protein
40	 43.88	+1	44285..45280	-	331	184152695	-	LAR_0040	-	UDP-glucose 4-epimerase
41	 42.34	0	45282..46469	-	395	184152696	-	LAR_0041	-	aromatic amino acid aminotransferase
42	 45.05	+1	46977..47198	+	73	184152697	-	LAR_0042	-	hypothetical protein
43	 42.40	+1	47316..49553	+	745	184152698	-	LAR_0043	-	ATP-dependent Clp protease ATP-binding subunit
44	 39.60	0	50442..53297	+	951	184152699	-	LAR_0044	-	hypothetical protein
45	 40.68	0	53379..53963	-	194	184152700	-	LAR_0045	-	acetyltransferase
46	 40.10	0	54103..55566	+	487	184152701	-	LAR_0046	-	cardiolipin synthase
47	 41.10	0	55695..59477	+	1260	184152702	-	LAR_0047	-	ATP-dependent nuclease subunit B
48	 41.25	0	59477..63655	+	1392	184152703	-	LAR_0048	-	ATP-dependent nuclease subunit A
49	 40.81	0	63656..64591	+	311	184152704	-	LAR_0049	-	transcription regulator
50	 45.46	+1	64655..65833	+	392	184152705	-	LAR_0050	-	acetyl-CoA acetyltransferase
51	 41.78	0	66145..67494	+	449	184152706	-	LAR_0051	-	sugar transport protein
52	 40.79	0	67583..69835	+	750	184152707	-	LAR_0052	-	maltose phosphorylase
53	 38.94	0	69839..70516	+	225	184152708	-	LAR_0053	-	beta-phosphoglucomutase
54	 38.33	0	71163..71783	+	206	184152709	-	LAR_0054	-	hypothetical protein
55	 37.69	0	71785..72450	+	221	184152710	-	LAR_0055	-	two-component system response regulator
56	 38.62	0	72462..73709	+	415	184152711	-	LAR_0056	-	two-component system histidine kinase
57	 39.59	0	73712..74893	+	393	184152712	-	LAR_0057	-	hypothetical protein
58	 40.87	0	75045..76385	+	446	184152713	-	LAR_0058	-	gamma-glutamylcysteine synthase
59	 35.95	0	76631..77089	+	152	184152714	-	LAR_0059	-	transposase
60	 41.15	0	77288..78016	-	242	184152715	-	LAR_0060	-	glutamine amidotransferase
61	 40.37	0	78135..79001	+	288	184152716	-	LAR_0061	-	oxidoreductase
62	 37.08	0	79140..80927	+	595	184152717	-	LAR_0062	-	glycerophosphodiester phosphodiesterase
63	 41.77	0	80980..81477	-	165	184152718	-	LAR_0063	-	hypothetical protein
64	 40.30	0	81746..83095	+	449	184152719	-	LAR_0064	-	NADH oxidase
65	 42.67	+1	83155..84129	-	324	184152720	-	LAR_0065	-	GMP reductase
66	 42.11	0	84325..85623	+	432	184152721	-	LAR_0066	-	adenylosuccinate synthase
67	 39.57	0	85734..86519	+	261	184152722	-	LAR_0067	-	hypothetical protein
68	 41.53	0	86685..87221	+	178	184152723	-	LAR_0068	-	pyrimidine operon regulator
69	 38.82	0	87975..89231	-	418	184152724	-	LAR_0069	-	transposase
70	 37.85	0	89297..89761	+	154	184152725	-	LAR_0070	-	transposase
71	 40.82	0	89886..90620	+	244	184152726	-	LAR_0071	-	hypothetical protein
72	 38.71	0	90626..92020	+	464	184152727	-	LAR_0072	-	amino acid transport protein
73	 25.76	-2	92492..92689	+	65	184152728	-	LAR_0073	-	hypothetical protein
74	 32.89	-1	92677..93132	+	151	184152729	-	LAR_0074	-	hypothetical protein
75	 40.79	0	93740..95281	+	513	184152730	-	LAR_0075	-	poly(glycerol-phosphate) alpha-glucosyltransferase
76	 39.59	0	95283..96785	+	500	184152731	-	LAR_0076	-	poly(glycerol-phosphate) alpha-glucosyltransferase
77	 41.86	0	96897..98714	+	605	184152732	-	LAR_0077	-	hypothetical protein
78	 39.10	0	98898..100580	+	560	184152733	-	LAR_0078	-	alpha-glucosidase
79	 42.42	+1	100598..101983	+	461	184152734	-	LAR_0079	-	sugar transport protein
80	 43.65	+1	102061..105231	-	1056	184152735	-	LAR_0080	-	carbamoylphosphate synthase large subunit
81	 43.34	+1	105224..106312	-	362	184152736	-	LAR_0081	-	carbamoylphosphate synthase small subunit
82	 42.93	+1	106694..107923	-	409	184152737	-	LAR_0082	-	sugar transport protein
83	 42.73	+1	108227..109237	-	336	184152738	-	LAR_0083	-	transcription regulator
84	 45.49	+1	109376..110782	-	468	184152739	-	LAR_0084	-	RNA methyltransferase
85	 38.05	0	111038..111610	+	190	184152740	-	LAR_0085	-	hypothetical protein
86	 41.81	0	111610..112860	+	416	184152741	-	LAR_0086	-	hypothetical protein
87	 44.12	+1	112863..113789	+	308	184152742	-	LAR_0087	-	putative thiamin biosynthesis lipoprotein
88	 42.88	+1	114287..115669	+	460	184152743	-	LAR_0088	-	reverse transcriptase/maturase family protein
89	 39.09	0	115934..117757	+	607	184152744	-	LAR_0089	-	hypothetical protein
90	 40.13	0	118614..120584	+	656	184152745	-	LAR_0090	-	hypothetical protein
91	 41.44	0	121348..122655	+	435	184152746	-	LAR_0091	-	seryl-tRNA synthase
92	 38.25	0	122924..124387	+	487	184152747	-	LAR_0092	-	glutamine ABC transporter substrate binding and permease components
93	 41.67	0	124389..125132	+	247	184152748	-	LAR_0093	-	glutamine ABC transporter ATP-binding component
94	 39.11	0	125436..126785	+	449	184152749	-	LAR_0094	-	amino acid transport protein
95	 39.27	0	127736..128947	+	403	184152750	-	LAR_0095	-	nucleoside transport protein
96	 40.81	0	129028..129936	+	302	184152751	-	LAR_0096	-	inosine-uridine preferring nucleoside hydrolase
97	 39.89	0	130039..130923	+	294	184152752	-	LAR_0097	-	3-hydroxyacyl-CoA dehydrogenase
98	 40.63	0	131101..131826	+	241	184152753	-	LAR_0098	-	glucose-inhibited division protein B
99	 39.42	0	131844..132812	+	322	184152754	-	LAR_0099	-	chromosome partitioning protein ParB
100	 39.43	0	132825..133595	+	256	184152755	-	LAR_0100	-	chromosome partitioning protein ParA
39.15	MEAN

3.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.