IslandPath Analysis: Burkholderia mallei NCTC 10247



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.82   STD DEV: 4.82
Burkholderia mallei NCTC 10247 chromosome I, complete sequence - 1..3495687
3476 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.79	0	25..1626	+	533	126449063	dnaA	BMA10247_0001	-	chromosomal replication initiation protein
2	 63.50	0	1789..2892	+	367	126448071	dnaN	BMA10247_0002	-	DNA polymerase III subunit beta
3	 64.16	0	3081..5549	+	822	126451013	gyrB	BMA10247_0003	-	DNA gyrase subunit B
4	 56.82	-2	6075..6338	+	87	126449993	-	BMA10247_0004	-	transposase subfamily protein
5	 61.75	-1	6362..7195	+	277	126448538	-	BMA10247_0005	-	A, transposase OrfB
6	 70.22	0	7791..8156	-	121	126449251	-	BMA10247_0007	-	TonB domain-containing protein
7	 70.24	0	8173..8340	-	55	126449141	-	BMA10247_0008	-	hypothetical protein
8	 67.30	0	8393..8866	-	157	126449898	-	BMA10247_0009	-	hypothetical protein
9	 68.90	0	9405..11192	-	595	126450662	-	BMA10247_0010	-	O-antigen polymerase family protein
10	 73.16	+1	11430..11999	-	189	126448905	-	BMA10247_0011	-	putative type IV pilin
11	 68.49	0	12167..12880	-	237	126450562	-	BMA10247_0012	-	TerC family integral membrane protein
12	 64.09	0	13031..13960	-	309	126451321	sucD	BMA10247_0013	-	succinyl-CoA synthetase subunit alpha
13	 63.07	0	14057..15223	-	388	126448502	sucC	BMA10247_0014	-	succinyl-CoA synthetase subunit beta
14	 68.46	0	15303..15914	-	203	126451091	-	BMA10247_0015	-	hypothetical protein
15	 71.04	0	16206..17189	-	327	126448247	recX	BMA10247_0016	-	recombination regulator RecX
16	 64.05	0	17189..18259	-	356	126448472	recA	BMA10247_0017	-	recombinase A
17	 69.76	0	18463..19206	+	247	126449442	-	BMA10247_0018	-	DNA-binding response regulator
18	 70.22	0	19230..20747	+	505	126450458	-	BMA10247_0019	-	sensor histidine kinase
19	 64.62	0	20970..22628	+	552	126451359	-	BMA10247_0020	-	major facilitator family transporter
20	 76.39	+1	22625..22768	+	47	126450438	-	BMA10247_0021	-	hypothetical protein
21	 63.76	0	23031..24026	+	331	126449689	-	BMA10247_0023	-	hypothetical protein
22	 61.75	-1	24054..24887	-	277	126450711	-	BMA10247_0024	-	IS407A, transposase OrfB
23	 56.82	-2	24911..25174	-	87	126448250	-	BMA10247_0025	-	IS407A, transposase OrfA
24	 72.81	+1	25723..25836	-	37	126448667	-	BMA10247_0027	-	hypothetical protein
25	 72.95	+1	25864..27582	+	572	126449281	-	BMA10247_0028	-	hypothetical protein
26	 73.72	+1	27904..28527	-	207	126448552	-	BMA10247_0029	-	hypothetical protein
27	 71.50	0	28520..29554	-	344	126450852	-	BMA10247_0030	-	alpha/beta fold family hydrolase
28	 67.34	0	29574..30020	-	148	126450046	-	BMA10247_0031	-	hypothetical protein
29	 68.97	0	30152..31282	-	376	126448904	rfaF	BMA10247_0032	-	ADP-heptose--LPS heptosyltransferase II
30	 65.15	0	31321..31518	-	65	126451316	-	BMA10247_0033	-	hypothetical protein
31	 65.04	0	31584..32507	-	307	126450144	ilvE	BMA10247_0034	-	branched-chain amino acid aminotransferase
32	 68.80	0	32729..33478	+	249	126449330	-	BMA10247_0035	-	AzlC family protein
33	 71.60	0	33475..33798	+	107	126448572	-	BMA10247_0036	-	hypothetical protein
34	 68.92	0	33930..35258	+	442	126450007	pgk	BMA10247_0037	-	phosphoglycerate kinase
35	 75.36	+1	35339..35614	+	91	126450539	-	BMA10247_0038	-	hypothetical protein
36	 67.99	0	35593..37029	+	478	126451116	pyk	BMA10247_0039	-	pyruvate kinase
37	 65.16	0	37310..38374	+	354	126447974	cbbA	BMA10247_0040	-	fructose-1,6-bisphosphate aldolase
38	 66.33	0	38564..39454	+	296	126448933	purC	BMA10247_0041	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
39	 71.10	0	39490..40008	+	172	126448049	purE	BMA10247_0042	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
40	 71.51	0	40088..41284	+	398	126449000	purK	BMA10247_0043	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
41	 74.17	+1	41296..42321	+	341	126449438	-	BMA10247_0044	-	Sua5/YciO/YrdC/YwlC family protein
42	 61.59	-1	42376..42513	+	45	126450881	-	BMA10247_0045	-	hypothetical protein
43	 70.09	0	42609..43748	-	379	126449875	-	BMA10247_0046	-	hypothetical protein
44	 64.54	0	43853..44509	-	218	126451336	-	BMA10247_0047	-	hypothetical protein
45	 64.66	0	44522..44770	-	82	126449060	-	BMA10247_0048	-	sterol desaturase family protein
46	 67.26	0	44979..45146	-	55	126450099	-	BMA10247_0049	-	hypothetical protein
47	 71.98	0	45122..46663	-	513	126448459	dacB	BMA10247_0050	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
48	 69.83	0	46841..47503	+	220	126448259	-	BMA10247_0051	-	DNA-binding response regulator
49	 72.82	+1	47507..48823	+	438	126449613	-	BMA10247_0052	-	sensor histidine kinase
50	 68.60	0	49321..50772	+	483	126450167	-	BMA10247_0053	-	serine protease
51	 69.50	0	50932..51354	+	140	126450773	-	BMA10247_0054	-	hypothetical protein
52	 64.75	0	51482..51847	+	121	126448622	-	BMA10247_0055	-	hypothetical protein
53	 73.25	+1	51875..52603	+	242	126450242	-	BMA10247_0056	-	carbon monoxide dehydrogenase family protein
54	 66.98	0	52930..53565	-	211	126449462	bpeR	BMA10247_0057	-	multidrug efflux pump repressor protein BpeR
55	 69.83	0	53975..55237	+	420	126449515	bpeA	BMA10247_0058	-	multidrug efflux periplasmic linker protein BpeA
56	 65.23	0	55253..58453	+	1066	126448756	bpeB	BMA10247_0059	-	inner membrane multidrug efflux protein BpeB
57	 71.13	0	58457..60001	+	514	126449899	-	BMA10247_0060	-	RND efflux system outer membrane lipoprotein
58	 63.56	0	60439..61179	+	246	126449145	-	BMA10247_0061	-	isrso15-transposase
59	 60.00	-1	61180..61659	+	159	126450977	-	BMA10247_0062	-	ISBma1, transposase
60	 67.86	0	61656..61823	+	55	126450192	-	BMA10247_0063	-	hypothetical protein
61	 57.20	-2	62714..62977	+	87	126448741	-	BMA10247_0065	-	transposase subfamily protein
62	 61.75	-1	63001..63834	+	277	126448743	-	BMA10247_0066	-	A, transposase OrfB
63	 66.10	0	63862..64386	-	174	126451105	-	BMA10247_0067	-	xanthine permease
64	 77.12	+1	64986..66152	+	388	126449261	-	BMA10247_0068	-	xylulose kinase
65	 69.08	0	66428..67462	-	344	126449040	-	BMA10247_0069	-	DJ-1/PfpI family protein/transcriptional regulator, AraC family
66	 65.04	0	67667..68773	+	368	126448337	-	BMA10247_0070	-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
67	 69.92	0	68787..69647	+	286	126450594	-	BMA10247_0071	-	putative esterase
68	 71.15	0	69792..70616	-	274	126448876	-	BMA10247_0072	-	putative cation ABC transporter, permease protein
69	 70.50	0	70576..71436	-	286	126448143	-	BMA10247_0073	-	putative cation ABC transporter, ATP-binding protein
70	 70.07	0	71471..72409	-	312	126451396	-	BMA10247_0074	-	putative cation ABC transporter, periplasmic cation-binding protein
71	 68.82	0	72622..73086	-	154	126450170	-	BMA10247_0075	-	FUR family transcriptional regulator
72	 69.50	0	73380..74156	+	258	126449869	-	BMA10247_0076	-	sorbitol dehydrogenase
73	 74.09	+1	74161..75117	+	318	126449067	-	BMA10247_0077	-	carbohydrate kinase
74	 73.72	+1	75105..76550	+	481	126448366	-	BMA10247_0078	-	tagatose 6 phosphate kinase
75	 66.82	0	76645..77973	+	442	126449056	-	BMA10247_0079	-	putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein
76	 66.25	0	78069..79025	+	318	126448315	-	BMA10247_0080	-	putative sorbitol/mannitol ABC transporter, permease protein
77	 65.74	0	79022..79888	+	288	126450141	-	BMA10247_0081	-	putative sorbitol/mannitol ABC transporter, permease protein
78	 74.11	+1	79885..80583	+	232	126449355	-	BMA10247_0082	-	HAD family hydrolase
79	 68.01	0	80644..81756	+	370	126451377	-	BMA10247_0084	-	carbohydrate ABC transporter ATP-binding protein
80	 84.77	+2	81722..81964	-	80	126448653	-	BMA10247_0083	-	hypothetical protein
81	 68.79	0	81961..83514	-	517	126449757	-	BMA10247_0085	-	hypothetical protein
82	 71.64	0	83633..84517	-	294	126448800	-	BMA10247_0086	-	LysR family transcriptional regulator
83	 74.52	+1	84655..85851	+	398	126449714	-	BMA10247_0087	-	putative esterase
84	 76.16	+1	85848..87059	+	403	126448936	-	BMA10247_0088	-	major facilitator family transporter
85	 71.52	0	87221..88168	-	315	126451111	-	BMA10247_0089	-	putative transcriptional regulator
86	 74.47	+1	88255..89727	-	490	126450312	xylB-1	BMA10247_0090	-	xylulokinase
87	 72.35	0	89838..91280	-	480	126449545	-	BMA10247_0091	-	mannitol dehydrogenase family protein
88	 73.69	+1	91452..92348	-	298	126448744	-	BMA10247_0092	-	LysR family transcriptional regulator
89	 73.40	+1	92449..94068	+	539	126450674	mdlC	BMA10247_0093	-	benzoylformate decarboxylase
90	 73.28	+1	94183..95634	+	483	126451269	-	BMA10247_0094	-	aldehyde dehydrogenase family protein
91	 73.46	+1	95639..96595	+	318	126449132	panE-1	BMA10247_0095	-	2-dehydropantoate 2-reductase
92	 70.37	0	97077..97265	-	62	126448332	-	BMA10247_0096	-	hypothetical protein
93	 74.23	+1	97275..98729	+	484	126448938	-	BMA10247_0097	-	major facilitator family transporter
94	 68.62	0	98755..99675	-	306	126450431	kynA	BMA10247_0098	-	tryptophan 2,3-dioxygenase
95	 70.42	0	99774..101024	-	416	126451370	kynU	BMA10247_0099	-	kynureninase
96	 73.05	+1	101066..101707	-	213	126448561	kynB	BMA10247_0100	-	arylformamidase
97	 65.08	0	101837..102340	+	167	126449212	-	BMA10247_0102	-	AsnC family transcriptional regulator
98	 66.47	0	102327..102842	-	171	126449397	-	BMA10247_0101	-	flavin reductase domain-containing protein
99	 68.29	0	102911..103774	+	287	126449795	msrA	BMA10247_0103	-	peptide methionine sulfoxide reductase
100	 79.53	+2	103820..104161	-	113	126450744	-	BMA10247_0104	-	hypothetical protein
67.82	MEAN

4.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.