IslandPath Analysis: Clostridium difficile 630



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.91   STD DEV: 4.23
Clostridium difficile 630, complete genome - 1..4290252
3742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.08	0	1..1320	+	439	126697567	dnaA	CD0001	-	chromosomal replication initiator protein
2	 25.81	0	1460..2668	+	402	126697568	dnaN	CD0002	-	DNA polymerase III subunit beta
3	 26.57	0	2805..3011	+	68	126697569	-	CD0003	-	putative RNA-binding mediating protein
4	 25.63	-1	3029..4144	+	371	126697570	recF	CD0004	-	DNA replication and repair protein
5	 32.39	0	4145..6046	+	633	126697571	gyrB	CD0005	-	DNA gyrase subunit B
6	 30.98	0	6066..8492	+	808	126697572	gyrA	CD0006	-	DNA gyrase subunit A
7	 25.93	0	8561..8857	+	98	126697573	-	CD0007	-	hypothetical protein
8	 27.59	0	8857..9117	+	86	126697574	-	CD0008	-	hypothetical protein
9	 25.00	-1	9135..9446	+	103	126697575	rsbV	CD0009	-	anti-sigma-B factor antagonist
10	 27.45	0	9450..9857	+	135	126697576	rsbW	CD0010	-	anti-sigma-B factor (serine-protein kinase)
11	 27.91	0	9857..10630	+	257	126697577	sigB	CD0011	-	RNA polymerase sigma-B factor
12	 27.46	0	16073..16600	+	175	126697578	-	CD0012	-	putative small-molecule-binding protein
13	 25.40	-1	16612..17493	+	293	126697579	-	CD0013	-	putative mechanosensitive ion channel protein
14	 30.90	0	17952..19223	+	423	126697580	serS1	CD0014	-	seryl-tRNA synthetase
15	 28.07	0	19544..19999	+	151	126697581	-	CD0015	-	putative cytosine/adenosine deaminase
16	 27.23	0	20470..22107	+	545	126697582	dnaH	CD0016	-	DNA polymerase III subunits gamma and tau
17	 34.47	+1	22166..22516	+	116	126697583	-	CD0017	-	hypothetical protein
18	 35.17	+1	22529..23128	+	199	126697584	recD	CD0018	-	recombination protein
19	 29.35	0	23561..24766	-	401	126697585	-	CD0019	-	putative glycosyl transferase
20	 27.54	0	34145..34558	+	137	126697586	-	CD0020	-	hypothetical protein
21	 29.90	0	34867..38298	+	1143	126697587	pyc	CD0021	-	pyruvate carboxylase
22	 30.76	0	38528..40468	+	646	126697588	-	CD0022	-	putative translation elongation factor
23	 26.02	0	40921..41385	+	154	126697589	ctsR	CD0023	-	transcriptional regulator
24	 26.87	0	41392..41886	+	164	126697590	-	CD0024	-	putative DNA repair protein
25	 28.56	0	41902..42927	+	341	126697591	-	CD0025	-	ATP:guanido phosphotransferase
26	 31.25	0	42914..45361	+	815	126697592	clpC	CD0026	-	ATP-dependent Clp protease
27	 31.44	0	45541..46914	+	457	126697593	radA	CD0027	-	DNA repair protein RadA
28	 28.94	0	46917..47987	+	356	126697594	-	CD0028	-	DNA integrity scanning protein DisA
29	 28.95	0	48076..49170	+	364	126697595	-	CD0029	-	hypothetical protein
30	 27.04	0	49299..51476	+	725	126697596	-	CD0030	-	hypothetical protein
31	 24.59	-1	51662..52507	-	281	126697597	-	CD0031	-	AraC family transcription regulator
32	 33.08	0	52724..53890	+	388	126697598	-	CD0032	-	putative beta-glucosidase
33	 31.75	0	53912..55558	+	548	126697599	-	CD0033	-	putative beta-xylosidase
34	 29.04	0	55655..57028	+	457	126697600	-	CD0034	-	putative xylose transporter
35	 28.83	0	57469..58422	+	317	126697601	-	CD0035	-	transcriptional regulator
36	 32.71	0	58454..59422	+	322	126697602	acoA	CD0036	-	acetoin:2,6-dichlorophenolindophenol oxidoreductase alpha subunit
37	 35.06	+1	59447..60433	+	328	126697603	acoB	CD0037	-	acetoin:2,6-dichlorophenolindophenol oxidoreductase beta subunit
38	 30.95	0	60446..61492	+	348	126697604	acoC	CD0038	-	E2 component of acetoin dehydrogenase enzyme system (dihydrolipoamide acetyltransferase)
39	 32.06	0	61659..63389	+	576	126697605	acoL	CD0039	-	E3 component of acetoin dehydrogenase enzyme system (dihydrolipoyl dehydrogenase)
40	 28.72	0	63807..66755	+	982	126697606	-	CD0040	-	putative transcription antiterminator
41	 29.25	0	66733..67197	+	154	126697607	-	CD0041	-	PTS system, IIA component
42	 30.03	0	67277..67579	+	100	126697608	-	CD0042	-	PTS system, IIB component
43	 32.52	0	67656..69005	+	449	126697609	-	CD0043	-	PTS system, IIC component
44	 20.25	-2	69040..69513	+	157	126697610	-	CD0044	-	hypothetical protein
45	 33.95	0	69685..70335	+	216	126697611	-	CD0045	-	putative sugar-phosphate aldolase
46	 23.69	-1	70509..71441	+	310	126697612	-	CD0046	-	putative lipoate-protein ligase
47	 28.29	0	71715..72428	+	237	126697613	ispD	CD0047	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
48	 31.89	0	72425..72910	+	161	126697614	ispF	CD0048	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
49	 32.58	0	73277..74992	+	571	126697615	proS	CD0049	-	prolyl-tRNA synthetase
50	 33.06	0	75114..76559	+	481	126697616	-	CD0050	-	prolyl-tRNA synthetase
51	 30.36	0	76997..78478	+	493	126697617	gltX	CD0051	-	glutamyl-tRNA synthetase
52	 30.35	0	78990..80396	+	468	126697618	cysS	CD0052	-	cysteinyl-tRNA synthetase
53	 27.53	0	80399..80794	+	131	126697619	-	CD0053	-	hypothetical protein
54	 30.30	0	80900..81658	+	252	126697620	thyX	CD0054	-	FAD-dependent thymidylate synthase
55	 32.53	0	81662..82408	+	248	126697621	-	CD0055	-	putative tRNA/rRNA methyltransferase
56	 29.55	0	82411..82938	+	175	126697622	-	CD0056	-	hypothetical protein
57	 29.26	0	82988..83650	+	220	126697623	sigH	CD0057	-	RNA polymerase factor sigma-70
58	 37.27	+1	83724..84917	+	397	126697624	tufA	CD0058	-	elongation factor Tu
59	 28.00	0	85167..85316	+	49	126697625	rpmG	CD0058A	-	50S ribosomal protein L33
60	 30.63	0	85342..85563	+	73	126697626	secE	CD0059	-	preprotein translocase SecE subunit
61	 33.15	0	85583..86125	+	180	126697627	nusG	CD0060	-	transcription antitermination protein
62	 35.21	+1	86164..86589	+	141	126697628	rplK	CD0061	-	50S ribosomal protein L11
63	 34.33	+1	86660..87358	+	232	126697629	rplA	CD0062	-	50S ribosomal protein L1
64	 32.74	0	87581..88087	+	168	126697630	rplJ	CD0063	-	50S ribosomal protein L10
65	 34.70	+1	88144..88509	+	121	126697631	rplL	CD0064	-	50S ribosomal protein L7/L12
66	 33.21	0	88901..89689	+	262	126697632	-	CD0065	-	NADP-dependent 7-alpha-hydroxysteroid dehydrogenase
67	 33.33	0	90160..93876	+	1238	126697633	rpoB	CD0066	-	DNA-directed RNA polymerase subunit beta
68	 33.79	0	93918..97403	+	1161	126697634	rpoC	CD0067	-	DNA-directed RNA polymerase subunit beta'
69	 37.12	+1	97692..98114	+	140	161723227	rpsL	CD0068	-	30S ribosomal protein S12
70	 34.61	+1	98238..98708	+	156	126697636	rpsG	CD0069	-	30S ribosomal protein S7
71	 36.43	+1	98757..100823	+	688	126697637	fusA	CD0070	-	translation elongation factor G
72	 37.27	+1	100916..102109	+	397	126697638	tufB	CD0071	-	elongation factor Tu
73	 30.45	0	102481..102792	+	103	126697639	rpsJ	CD0072	-	30S ribosomal protein S10
74	 34.29	+1	102884..103513	+	209	126697640	rplC	CD0073	-	50S ribosomal protein L3
75	 32.11	0	103513..104166	+	217	126697641	rplD	CD0074	-	50S ribosomal protein L4
76	 31.96	0	104166..104456	+	96	126697642	rplW	CD0075	-	50S ribosomal protein L23
77	 34.06	0	104486..105316	+	276	126697643	rplB	CD0076	-	50S ribosomal protein L2
78	 32.27	0	105351..105632	+	93	126697644	rpsS	CD0077	-	30S ribosomal protein S19
79	 34.52	+1	105664..105999	+	111	126697645	rplV	CD0078	-	50S ribosomal protein L22
80	 35.54	+1	106022..106837	+	271	126697646	rpsC	CD0079	-	30S ribosomal protein S3
81	 37.50	+1	106873..107304	+	143	126697647	rplP	CD0080	-	50S ribosomal protein L16
82	 28.92	0	107306..107509	+	67	126697648	rpmC	CD0080A	-	50S ribosomal protein L29
83	 32.16	0	107533..107787	+	84	126697649	rpsQ	CD0081	-	30S ribosomal protein S17
84	 36.59	+1	107813..108181	+	122	126697650	rplN	CD0082	-	50S ribosomal protein L14
85	 32.69	0	108202..108510	+	102	126697651	rplX	CD0083	-	50S ribosomal protein L24
86	 30.76	0	108540..109082	+	180	126697652	rplE	CD0084	-	50S ribosomal protein L5
87	 37.10	+1	109100..109285	+	61	126697653	rpsN	CD0084A	-	30S ribosomal protein S14
88	 33.08	0	109318..109716	+	132	126697654	rpsH	CD0085	-	30S ribosomal protein S8
89	 31.86	0	109747..110289	+	180	126697655	rplF	CD0086	-	50S ribosomal protein L6
90	 34.15	+1	110325..110693	+	122	126697656	rplR	CD0087	-	50S ribosomal protein L18
91	 38.82	+2	110714..111223	+	169	126697657	rpsE	CD0088	-	30S ribosomal protein S5
92	 29.03	0	111238..111423	+	61	126697658	rpmD	CD0088A	-	50S ribosomal protein L30
93	 34.91	+1	111456..111899	+	147	126697659	rplO	CD0089	-	50S ribosomal protein L15
94	 32.07	0	111943..113211	+	422	126697660	prlA	CD0090	-	preprotein translocase SecY subunit
95	 32.26	0	113228..113878	+	216	126697661	adk	CD0091	-	adenylate kinase
96	 35.07	+1	113879..114625	+	248	126697662	map1	CD0092	-	methionine aminopeptidase
97	 25.45	-1	114638..114916	+	92	126697663	-	CD0093	-	putative ribosomal protein
98	 34.25	+1	114954..115172	+	72	126697664	infA	CD0094	-	translation initiation factor IF-1
99	 28.95	0	115208..115321	+	37	126697665	rpmJ	CD0094A	-	50S ribosomal protein L36
100	 31.45	0	115474..115845	+	123	126697666	rpsM	CD0095	-	30S ribosomal protein S13
29.91	MEAN

4.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.