IslandPath Analysis: Lactobacillus gasseri ATCC 33323



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.09   STD DEV: 3.27
Lactobacillus gasseri ATCC 33323, complete genome - 1..1894360
1755 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.34	0	102..1496	+	464	116628684	-	LGAS_0001	-	DNA replication ATPase initiation
2	 34.66	0	1681..2811	+	376	116628685	-	LGAS_0002	-	DNA polymerase sliding clamp subunit
3	 38.00	0	3089..3238	+	49	116628686	-	LGAS_0003	-	S4-like RNA binding protein
4	 35.64	0	3242..4366	+	374	116628687	recF	LGAS_0004	-	recombination protein F
5	 39.13	+1	4367..6334	+	655	116628688	-	LGAS_0005	-	DNA gyrase, B subunit
6	 38.71	+1	6345..8834	+	829	116628689	-	LGAS_0006	-	DNA gyrase, A subunit
7	 35.02	0	9021..9317	+	98	116628690	rpsF	LGAS_0007	-	30S ribosomal protein S6
8	 41.62	+1	9351..9869	+	172	116628691	-	LGAS_0008	-	single-stranded DNA-binding protein
9	 43.16	+2	9894..10127	+	77	116628692	-	LGAS_0009	-	ribosomal protein S18
10	 32.31	0	10222..10908	+	228	116628693	-	LGAS_0010	-	Mg2+ and Co2+ transporter
11	 36.95	0	11245..13263	+	672	116628694	-	LGAS_0011	-	signal protein
12	 36.34	0	13266..13730	+	154	116628695	rplI	LGAS_0012	-	50S ribosomal protein L9
13	 39.23	+1	13733..15106	+	457	116628696	-	LGAS_0013	-	replicative DNA helicase
14	 37.97	0	15201..16085	+	294	116628697	-	LGAS_0014	-	transcriptional regulator and fructokinase
15	 39.90	+1	16159..17301	-	380	116628698	-	LGAS_0015	-	hypothetical protein
16	 37.20	0	17430..19448	-	672	116628699	-	LGAS_0016	-	hypothetical protein
17	 36.47	0	19556..20257	-	233	116628700	-	LGAS_0017	-	Mg2+ transporter
18	 30.62	-1	20749..21375	-	208	116628701	-	LGAS_0019	-	phosphatase
19	 29.58	-1	21739..21951	+	70	116628702	-	LGAS_0020	-	transcriptional regulator
20	 31.98	0	21954..22472	+	172	116628703	-	LGAS_0021	-	hypothetical protein
21	 36.77	0	22512..23558	+	348	116628704	-	LGAS_0022	-	oxidoreductase
22	 35.14	0	23795..24955	+	386	116628705	-	LGAS_0024	-	acetyltransferase
23	 36.11	0	25106..25753	+	215	116628706	-	LGAS_0025	-	putative NADH-flavin reductase
24	 35.08	0	25806..26549	-	247	116628707	-	LGAS_0026	-	integral membrane protein
25	 36.16	0	26636..27343	+	235	116628708	-	LGAS_0027	-	HAD superfamily hydrolase
26	 38.81	+1	27379..28218	-	279	116628709	-	LGAS_0028	-	hypothetical protein
27	 35.48	0	28330..28515	-	61	116628710	-	LGAS_0029	-	hypothetical protein
28	 38.12	0	28890..30812	+	640	116628711	-	LGAS_0030	-	translation elongation factor (GTPase)
29	 32.04	0	30847..31773	-	308	116628712	-	LGAS_0031	-	Mg2+ and Co2+ transporter
30	 32.81	0	32036..32227	+	63	116628713	-	LGAS_0032	-	general stress response protein
31	 46.82	+2	32262..32528	+	88	116628714	-	LGAS_0033	-	hypothetical protein
32	 37.08	0	32664..33491	+	275	116628715	-	LGAS_0034	-	exonuclease III
33	 34.60	0	33548..36397	+	949	116628716	-	LGAS_0035	-	superfamily II DNA/RNA helicase
34	 34.80	0	36492..37379	+	295	116628717	-	LGAS_0036	-	alpha/beta hydrolase superfamily protein
35	 31.88	0	37367..37504	+	45	116628718	-	LGAS_0037	-	hypothetical protein
36	 32.54	0	37424..37675	-	83	116628719	-	LGAS_0038	-	hypothetical protein
37	 31.90	0	37786..38835	+	349	116628720	-	LGAS_0039	-	permease
38	 36.79	0	39078..40409	+	443	116628721	-	LGAS_0040	-	glutathione reductase
39	 42.25	+2	40454..41608	-	384	116628722	-	LGAS_0041	-	IMP dehydrogenase/GMP reductase
40	 31.08	-1	41682..42257	-	191	116628723	-	LGAS_0042	-	lysophospholipase L1 related esterase
41	 41.67	+2	42332..43363	-	343	116628724	-	LGAS_0043	-	D-lactate dehydrogenase, LdhA
42	 35.62	0	43603..46224	+	873	116628725	-	LGAS_0044	-	adhesion exoprotein
43	 38.43	+1	46590..57668	+	3692	116628726	-	LGAS_0045	-	adhesion exoprotein
44	 35.97	0	57837..60794	+	985	116628727	-	LGAS_0046	-	adhesion exoprotein
45	 35.56	0	60863..62347	+	494	116628728	-	LGAS_0047	-	glutamate gamma-aminobutyrate antiporter
46	 31.18	-1	62531..63457	+	308	116628729	-	LGAS_0048	-	transcriptional regulator
47	 38.25	0	63587..65437	+	616	116628730	-	LGAS_0049	-	fumarate reductase flavoprotein subunit
48	 36.26	0	65528..66892	+	454	116628731	-	LGAS_0050	-	branched-chain amino acid permease
49	 36.69	0	66959..67672	+	237	116628732	ubiE	LGAS_0051	-	ubiquinone/menaquinone biosynthesis methyltransferase
50	 33.33	0	67716..68630	+	304	116628733	-	LGAS_0052	-	prolyl aminopeptidase
51	 30.68	-1	68765..69367	+	200	116628734	-	LGAS_0053	-	hypothetical protein
52	 37.43	0	69430..70380	-	316	116628735	-	LGAS_0054	-	conjugated bile salt hydrolase-like protein
53	 37.09	0	70398..71753	-	451	116628736	-	LGAS_0055	-	conjugated bile Salt transporter
54	 35.19	0	73311..74171	-	286	116628737	-	LGAS_0057	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
55	 35.33	0	74168..75118	-	316	116628738	-	LGAS_0058	-	lipopolysaccharide biosynthesis glycosyltransferase
56	 33.44	0	75131..76084	-	317	116628739	-	LGAS_0059	-	lipopolysaccharide biosynthesis glycosyltransferase
57	 36.24	0	76114..76938	-	274	116628740	-	LGAS_0060	-	lipopolysaccharide biosynthesis glycosyltransferase
58	 33.97	0	76935..77717	-	260	116628741	-	LGAS_0061	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
59	 36.72	0	78181..78888	+	235	116628742	-	LGAS_0064	-	DNA-binding response regulator
60	 36.39	0	78920..80785	+	621	116628743	-	LGAS_0065	-	Signal transduction histidine kinase
61	 33.05	0	80679..82103	+	474	116628744	-	LGAS_0066	-	hypothetical protein
62	 33.33	0	82093..82914	+	273	116628745	-	LGAS_0067	-	hypothetical protein
63	 36.09	0	82921..83718	+	265	116628746	-	LGAS_0068	-	beta-lactamase superfamily hydrolase
64	 36.67	0	83766..85025	+	419	116628747	-	LGAS_0069	-	trypsin-like serine protease
65	 34.17	0	85539..86018	+	159	116628748	-	LGAS_0070	-	SPOUT methyltransferase superfamily protein
66	 33.64	0	86019..86672	-	217	116628749	-	LGAS_0071	-	ABC-type cobalt transport system, permease component CbiQ related transporter
67	 34.89	0	86686..88038	-	450	116628750	-	LGAS_0072	-	ABC-type cobalt transport system, ATPase component
68	 38.12	0	88019..88603	-	194	116628751	-	LGAS_0073	-	ABC-type cobalt transport system, permease component
69	 30.43	-1	88813..89742	+	309	116628752	-	LGAS_0074	-	AraC-type DNA-binding protein, response regulator
70	 39.17	+1	89782..90672	-	296	116628753	-	LGAS_0075	-	heat shock protein HtpX
71	 34.05	0	90681..91238	-	185	116628754	-	LGAS_0076	-	hypothetical protein
72	 33.15	0	91355..92461	-	368	116628755	-	LGAS_0077	-	di- and tricarboxylate transporter
73	 33.09	0	92638..93048	+	136	116628756	-	LGAS_0078	-	hypothetical protein
74	 38.30	0	93127..93267	+	46	116628757	-	LGAS_0079	-	hypothetical protein
75	 33.33	0	93441..94301	+	286	116628758	-	LGAS_0080	-	hypothetical protein
76	 34.48	0	94434..95741	+	435	116628759	-	LGAS_0081	-	glycosyltransferase
77	 35.03	0	95751..96869	+	372	116628760	-	LGAS_0082	-	endoglucanase Y
78	 31.78	-1	96984..97628	+	214	116628761	-	LGAS_0083	-	HD superfamily hydrolase
79	 33.44	0	97630..98559	+	309	116628762	-	LGAS_0084	-	restriction endonuclease
80	 35.29	0	98606..99370	-	254	116628763	-	LGAS_0085	-	ABC-type polar amino acid transport system, ATPase component
81	 36.37	0	99354..100967	-	537	116628764	-	LGAS_0086	-	ABC-type amino acid transport system, permease and periplasmic component
82	 37.89	0	101303..101872	-	189	116628765	-	LGAS_0087	-	3-methyladenine DNA glycosylase
83	 33.08	0	101960..102358	+	132	116628766	-	LGAS_0088	-	hypothetical protein
84	 36.40	0	102355..103137	-	260	116628767	-	LGAS_0089	-	hypothetical protein
85	 35.40	0	103124..103654	-	176	116628768	-	LGAS_0090	-	methylated DNA-protein cysteine methyltransferase
86	 33.19	0	103770..104483	-	237	116628769	-	LGAS_0091	-	NAD-dependent deacetylase
87	 29.37	-1	104529..105083	+	184	116628770	-	LGAS_0092	-	hypothetical protein
88	 35.92	0	105164..106555	-	463	116628771	-	LGAS_0093	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
89	 38.28	0	106639..107346	-	235	116628772	-	LGAS_0094	-	Zn-dependent protease
90	 35.17	0	107370..108293	-	307	116628773	-	LGAS_0095	-	alpha/beta hydrolase superfamily protein
91	 36.77	0	108377..109132	+	251	116628774	-	LGAS_0096	-	RNase H
92	 35.50	0	109292..110260	-	322	116628775	-	LGAS_0097	-	hypothetical protein
93	 35.14	0	110388..111218	+	276	116628776	-	LGAS_0098	-	glycosyltransferase-like protein
94	 38.01	0	111243..111905	+	220	116628777	-	LGAS_0099	-	alpha/beta fold family hydrolase
95	 32.78	0	111994..112356	+	120	116628778	-	LGAS_0100	-	hypothetical protein
96	 37.66	0	112437..113429	+	330	116628779	-	LGAS_0101	-	phosphoribosylpyrophosphate synthetase
97	 32.51	0	113581..114795	+	404	116628780	-	LGAS_0102	-	immunity protein PlnI
98	 35.78	0	114928..116277	+	449	116628781	-	LGAS_0103	-	gamma-aminobutyrate permease related permease
99	 32.88	0	116451..117110	+	219	116628782	-	LGAS_0104	-	transcriptional regulator
100	 35.60	0	117131..117970	+	279	116628783	-	LGAS_0105	-	hypothetical protein
35.09	MEAN

3.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.