IslandPath Analysis: Leptospira borgpetersenii serovar Hardjo-bovis L550



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.43
Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence - 1..3614446
2703 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.71	0	1..1908	-	635	116326853	gidA	LBL_0001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 39.61	0	2049..2972	+	307	116326854	ilvE	LBL_0002	-	branched-chain amino acid aminotransferase
3	 37.59	0	2979..3917	+	312	116326855	dnaX-1	LBL_0003	-	DNA polymerase III gamma and tau subunits
4	 36.00	-1	4254..5567	+	437	116326856	dnaA	LBL_0004	-	chromosomal replication initiator protein
5	 36.81	-1	6679..7800	+	373	116326857	dnaN	LBL_0005	-	DNA-directed DNA polymerase, beta subunit
6	 36.25	-1	7800..8897	+	365	116326858	recF	LBL_0006	-	recombinational DNA repair ATPase
7	 34.62	-1	8894..9358	+	154	116326859	-	LBL_0007	-	hypothetical protein
8	 39.77	0	9424..11349	+	641	116326860	gyrB	LBL_0008	-	DNA gyrase subunit B
9	 40.22	0	11368..13866	+	832	116326861	gyrA	LBL_0009	-	DNA gyrase subunit A
10	 39.08	0	13863..14819	+	318	116326862	-	LBL_0010	-	tRNA-dihydrouridine synthase
11	 43.97	0	15702..16265	-	187	116326863	lipL21	LBL_0012	-	LipL21 lipoprotein
12	 37.38	-1	16405..17961	+	518	116326864	-	LBL_0013	-	hypothetical protein
13	 36.80	-1	17984..18877	+	297	116326865	-	LBL_0014	-	transcriptional regulator
14	 37.01	-1	18819..19907	-	362	116326866	holA	LBL_0015	-	DNA-directed DNA polymerase, delta subunit
15	 44.91	+1	19994..20209	+	71	116326867	-	LBL_0016	-	hypothetical protein
16	 39.00	0	20645..21739	-	364	116326868	-	LBL_0017	-	transposase IS1533
17	 34.18	-1	22058..24292	-	744	116326869	-	LBL_0018	-	adenylate or guanylate cyclase
18	 42.80	0	24358..25371	-	337	116326870	fliG	LBL_0019	-	flagellar motor switch protein G
19	 36.13	-1	26133..26489	+	118	116326871	-	LBL_0020	-	glutaredoxin family protein
20	 40.74	0	30400..31668	+	422	116326872	-	LBL_0024	-	hypothetical protein
21	 36.83	-1	31732..32418	+	228	116326873	-	LBL_0025	-	hypothetical protein
22	 42.05	0	32470..34017	+	515	116326874	-	LBL_0026	-	hypothetical protein
23	 37.45	0	34027..35070	+	347	116326875	-	LBL_0027	-	lipoprotein
24	 36.18	-1	35067..35945	+	292	116326876	-	LBL_0028	-	Zn-dependent hydrolase
25	 37.07	-1	36218..38035	-	605	116326877	-	LBL_0029	-	hypothetical protein
26	 35.42	-1	38789..39316	-	175	116326878	-	LBL_0030	-	hypothetical protein
27	 39.80	0	39331..40551	-	406	116326879	-	LBL_0031	-	protein-disulfide isomerase
28	 39.94	0	40641..41366	-	241	116326880	hisA	LBL_0032	-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase
29	 36.97	-1	41363..41995	-	210	116326881	hisH-1	LBL_0033	-	glutamine amidotransferase
30	 40.58	0	41992..42612	-	206	116326882	hisB	LBL_0034	-	imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase
31	 37.98	0	43621..44244	+	207	116326883	-	LBL_0036	-	AcrR family transcriptional regulator
32	 39.04	0	44241..44906	+	221	116326884	-	LBL_0037	-	rhomboid family protein
33	 41.61	0	45350..45784	+	144	116326885	-	LBL_0038	-	hypothetical protein
34	 37.05	-1	45790..46839	+	349	116326886	-	LBL_0039	-	hypothetical protein
35	 37.81	0	47472..48632	-	386	116326887	-	LBL_0040	-	hypothetical protein
36	 40.26	0	48877..49482	-	201	116326888	-	LBL_0041	-	hypothetical protein
37	 42.25	0	49523..50587	+	354	116326889	prfA	LBL_0042	-	peptide chain release factor 1
38	 39.09	0	50652..52145	+	497	116326890	-	LBL_0043	-	Cys/Met metabolism PLP-dependent protein
39	 38.64	0	54004..54945	-	313	116326891	-	LBL_0045	-	sensor histidine kinase
40	 36.94	-1	54967..56742	+	591	116326892	-	LBL_0046	-	Para-aminobenzoate synthase
41	 39.39	0	57394..58053	+	219	116326893	aat	LBL_0048	-	leucyl/phenylalanyl-tRNA--protein transferase
42	 37.86	0	58124..58432	+	102	116326894	-	LBL_0049	-	hypothetical protein
43	 40.16	0	58574..60625	+	683	116326895	-	LBL_0050	-	long-chain-fatty-acid--CoA ligase
44	 39.00	0	61253..62347	-	364	116326896	-	LBL_0051	-	transposase IS1533
45	 37.24	-1	64474..65727	-	417	116326897	trmA-1	LBL_0052	-	tRNA (uracil-5-)-methyltransferase
46	 38.26	0	66046..66492	+	148	116326898	-	LBL_0055	-	hypothetical protein
47	 34.79	-1	66446..66856	+	136	116326899	-	LBL_0056	-	hypothetical protein
48	 38.90	0	67438..68532	-	364	116326900	-	LBL_0058	-	transposase IS1533
49	 40.15	0	69010..70050	-	346	116326901	lpxD-1	LBL_0059	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase
50	 39.66	0	70265..71197	+	310	116326902	-	LBL_0060	-	reductase
51	 40.64	0	71540..71758	+	72	116326903	-	LBL_0061	-	hypothetical protein
52	 33.12	-2	72052..72519	+	155	116326904	-	LBL_0062	-	cytosine/adenosine deaminase
53	 38.18	0	72649..74112	+	487	116326905	dnaX-2	LBL_0064	-	DNA polymerase III, gamma and tau subunits
54	 44.54	+1	74117..74464	+	115	116326906	-	LBL_0065	-	hypothetical protein
55	 41.25	0	74457..75050	+	197	116326907	recR	LBL_0066	-	recombinational DNA repair protein
56	 38.16	0	75053..76627	-	524	116326908	-	LBL_0067	-	hypothetical protein
57	 38.08	0	76631..77473	-	280	116326909	-	LBL_0068	-	substrate binding protein of an ABC transporter complex
58	 34.86	-1	77536..79173	-	545	116326910	-	LBL_0069	-	OmpA-family protein
59	 39.18	0	79366..80460	+	364	116326911	-	LBL_0070	-	transposase IS1533
60	 35.60	-1	82927..84429	-	500	116326912	-	LBL_0072	-	TPR repeat-containing protein
61	 38.89	0	85207..87474	-	755	116326913	vacB	LBL_0073	-	exoribonuclease R
62	 38.33	0	87480..88160	-	226	116326914	-	LBL_0074	-	metal-dependent molecular chaperone
63	 37.19	-1	88157..88726	-	189	116326915	-	LBL_0075	-	ATPase or kinase
64	 38.46	0	88734..89591	-	285	116326916	-	LBL_0076	-	HSP33 family chaperone
65	 37.17	-1	92306..93217	+	303	116326917	-	LBL_0078	-	hypothetical protein
66	 43.23	0	93237..94085	+	282	116326918	-	LBL_0079	-	inositol monophosphatase family protein
67	 38.84	0	94573..94935	-	120	116326919	-	LBL_0080	-	lipoprotein
68	 40.99	0	94939..95643	-	234	116326920	-	LBL_0081	-	hypothetical protein
69	 32.62	-2	97001..97564	-	187	116326921	-	LBL_0083	-	hypothetical protein
70	 37.77	0	98894..100447	+	517	116326922	-	LBL_0085	-	Zn-dependent carboxypeptidase
71	 37.27	-1	100440..100769	+	109	116326923	-	LBL_0086	-	hypothetical protein
72	 36.90	-1	100759..101151	-	130	116326924	-	LBL_0087	-	hypothetical protein
73	 37.76	0	101170..101757	-	195	116326925	-	LBL_0088	-	lipoprotein
74	 42.40	0	101766..102140	-	124	116326926	-	LBL_0089	-	hypothetical protein
75	 39.09	0	102696..103025	+	109	116326927	-	LBL_0090	-	hypothetical protein
76	 35.18	-1	103043..103639	-	198	116326928	-	LBL_0091	-	hypothetical protein
77	 35.34	-1	103689..104735	+	348	116326929	-	LBL_0092	-	hypothetical protein
78	 33.00	-2	104980..105282	+	100	116326930	-	LBL_0093	-	hypothetical protein
79	 34.30	-1	106876..107907	-	343	116326931	-	LBL_0095	-	metallopeptidase
80	 38.45	0	108768..109295	+	175	116326932	-	LBL_0096	-	hypothetical protein
81	 43.43	0	109328..111238	+	636	116326933	flgK	LBL_0097	-	flagellar hook-associated protein FlgK
82	 41.71	0	111278..112543	+	421	116326934	flgL-2	LBL_0098	-	flagellar hook-associated protein FlgL
83	 38.19	0	112745..113197	+	150	116326935	-	LBL_0099	-	flagellar assembly protein FliW
84	 39.22	0	113198..113452	+	84	116326936	csrA	LBL_0100	-	carbon storage regulator protein A
85	 34.09	-1	115787..116581	+	264	116326937	-	LBL_0103	-	lipoprotein
86	 38.85	0	116870..118681	-	603	116326938	-	LBL_0104	-	KefB related efflux transport protein
87	 41.76	0	118685..119479	-	264	116326939	-	LBL_0105	-	ThiJ/PfpI family protein
88	 37.04	-1	119763..120248	+	161	116326940	btuE-1	LBL_0106	-	glutathione peroxidase
89	 37.19	-1	120286..120726	+	146	116326941	-	LBL_0107	-	MarR family transcriptional regulator
90	 33.54	-2	120969..121937	-	322	116326942	-	LBL_0108	-	NDP-sugar dehydratase or epimerase
91	 37.37	-1	122065..122436	+	123	116326943	-	LBL_0109	-	lipoprotein
92	 38.76	0	122447..123238	-	263	116326944	-	LBL_0110	-	hypothetical protein
93	 40.06	0	123345..125768	+	807	116326945	plsB	LBL_0111	-	bifunctional glycerol-3-phosphate dehydrogenase/glycerol-3-phosphate acyltransferase
94	 40.98	0	125928..127091	-	387	116326946	purT	LBL_0112	-	phosphoribosylglycinamide formyltransferase 2
95	 33.70	-2	127865..129487	-	540	116326947	-	LBL_0113	-	AraC family transcriptional regulator
96	 39.01	0	130026..131117	+	363	116326948	-	LBL_0114	-	transposase IS1533
97	 42.94	0	132080..132901	-	273	116326949	hycG	LBL_0115	-	metal (Ni/Fe) hydrogenase, small subunit
98	 43.33	0	132898..134307	-	469	116326950	hycE	LBL_0116	-	metal (Ni/Fe) hydrogenase, large subunit
99	 42.60	0	134308..135516	-	402	116326951	hyfB-2	LBL_0117	-	formate hydrogenase, subunit
100	 40.90	0	135513..136133	-	206	116326952	hyfE	LBL_0118	-	formate hydrogenase, subunit E
40.88	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.