IslandPath Analysis: Streptococcus suis 98HAH33



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.07   STD DEV: 4.59
Streptococcus suis 98HAH33, complete genome - 1..2095698
2185 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.19	0	1..1374	+	457	146322039	dnaA	SSU98_0001	-	chromosomal replication initiation protein
2	 35.16	-1	1528..2460	+	310	146319851	-	SSU98_0002	-	DNA polymerase sliding clamp subunit
3	 34.78	-1	2457..2663	+	68	146319852	-	SSU98_0003	-	DNA polymerase sliding clamp subunit
4	 32.54	-1	2755..3636	+	293	146319853	-	SSU98_0004	-	sphingosine kinase and enzymes related to diacylglycerol kinase
5	 43.14	0	3646..3849	+	67	146319854	-	SSU98_0005	-	hypothetical protein
6	 40.44	0	3947..4312	+	121	146319855	-	SSU98_0006	-	transcriptional regulator
7	 44.03	0	4380..5258	+	292	146319856	-	SSU98_0007	-	GTPase, translation factor
8	 46.82	+1	5246..5512	+	88	146319857	-	SSU98_0008	-	GTPase, translation factor
9	 39.30	0	5670..6239	+	189	146319858	-	SSU98_0009	-	peptidyl-tRNA hydrolase
10	 37.07	0	6239..7201	+	320	146319859	-	SSU98_0010	-	transcription-repair coupling factor
11	 38.22	0	7195..9732	+	845	146319860	-	SSU98_0011	-	transcription-repair coupling factor
12	 29.51	-2	9873..10055	+	60	146319861	-	SSU98_0012	-	ribosome-associated heat shock protein implicated in the recycling of the 50S subunit
13	 35.77	-1	10042..10410	+	122	146319862	-	SSU98_0013	-	septum formation initiator
14	 26.32	-2	10407..10520	+	37	146319863	-	SSU98_0014	-	hypothetical protein
15	 34.27	-1	10533..11813	+	426	146319864	-	SSU98_0015	-	Beta-lactamase class A
16	 34.36	-1	11814..13082	+	422	146319865	-	SSU98_0016	-	ATPase
17	 35.73	-1	13090..13632	+	180	146319866	-	SSU98_0017	-	hypoxanthine-guanine phosphoribosyltransferase
18	 40.12	0	13654..15627	+	657	146319867	-	SSU98_0018	-	ATP-dependent Zn protease
19	 35.24	-1	15965..16435	+	156	146319868	-	SSU98_0019	-	Signal transduction histidine kinase
20	 45.45	0	23172..23270	-	32	146319870	-	SSU98_0021	-	hypothetical protein
21	 35.48	-1	23565..24401	+	278	146319871	-	SSU98_0022	-	putative cell shape-determining protein MreC
22	 42.36	0	24952..26247	+	431	146319872	-	SSU98_0023	-	hypothetical protein
23	 40.25	0	26350..27318	+	322	146319873	-	SSU98_0024	-	ribose-phosphate pyrophosphokinase
24	 44.61	0	27405..28583	+	392	146319874	-	SSU98_0025	-	aromatic amino acid aminotransferase
25	 41.38	0	28570..29352	+	260	146319875	-	SSU98_0026	-	DNA repair protein RecO
26	 48.61	+1	29349..30356	+	335	146319876	-	SSU98_0027	-	putative glycerol-3-phosphate acyltransferase PlsX
27	 34.54	-1	30349..30597	+	82	146319877	-	SSU98_0028	-	Acyl carrier protein
28	 42.66	0	30715..31422	+	235	146319878	-	SSU98_0029	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
29	 47.30	+1	31426..35154	+	1242	146319879	-	SSU98_0030	-	phosphoribosylformylglycinamidine synthase domain-containing protein
30	 46.39	+1	35157..36611	+	484	146319880	-	SSU98_0031	-	amidophosphoribosyltransferase
31	 50.00	+1	36652..37689	+	345	146319881	-	SSU98_0032	-	phosphoribosylaminoimidazole synthetase
32	 44.93	0	37686..38237	+	183	146319882	purN	SSU98_0033	-	phosphoribosylglycinamide formyltransferase
33	 49.35	+1	38247..39794	+	515	146319883	purH	SSU98_0034	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
34	 52.41	+2	39920..41182	+	420	146319884	-	SSU98_0035	-	phosphoribosylamine--glycine ligase
35	 53.17	+2	41208..41696	+	162	146319885	-	SSU98_0036	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
36	 50.09	+1	41683..42756	+	357	146319886	-	SSU98_0037	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
37	 29.73	-2	42766..43569	+	267	146319887	-	SSU98_0038	-	hypothetical protein
38	 28.69	-2	43642..44868	+	408	146319888	-	SSU98_0039	-	hypothetical protein
39	 49.11	+1	44870..46162	+	430	146319889	-	SSU98_0040	-	adenylosuccinate lyase
40	 32.12	-1	46569..46733	+	54	146319890	-	SSU98_0041	-	hypothetical protein
41	 37.07	0	47078..47827	+	249	146319891	-	SSU98_0042	-	amino acid transporter
42	 36.51	0	48037..48414	+	125	146319892	-	SSU98_0043	-	metal-dependent membrane protease
43	 37.68	0	48375..48857	+	160	146319893	-	SSU98_0044	-	hypothetical protein
44	 41.58	0	48850..49722	+	290	146319894	-	SSU98_0045	-	ABC-type multidrug transport system, ATPase component
45	 37.55	0	49722..50504	+	260	146319895	-	SSU98_0046	-	ABC-type sugar transport system, permease component
46	 41.06	0	50425..52209	+	594	146319896	-	SSU98_0047	-	ABC-type multidrug transport system, ATPase and permease component
47	 39.66	0	52311..52484	+	57	146319897	-	SSU98_0048	-	hypothetical protein
48	 53.19	+2	52779..53780	+	333	146319898	ruvB	SSU98_0049	-	Holliday junction DNA helicase B
49	 47.79	+1	53780..54526	+	248	146319899	-	SSU98_0050	-	hypothetical protein
50	 43.08	0	54528..55163	+	211	146319900	-	SSU98_0051	-	phosphatase
51	 36.16	-1	55395..56207	+	270	146319901	-	SSU98_0052	-	transcriptional regulator
52	 36.30	-1	56176..56310	+	44	146319902	-	SSU98_0053	-	hypothetical protein
53	 42.78	0	56715..57878	+	387	146319903	-	SSU98_0054	-	transposase
54	 37.70	0	58416..59354	-	312	146319904	-	SSU98_0055	-	transposase
55	 44.91	0	59488..60714	+	408	146319905	-	SSU98_0056	-	folylpolyglutamate synthase
56	 35.09	-1	60739..60852	+	37	146319906	-	SSU98_0057	-	hypothetical protein
57	 38.73	0	60905..61312	+	135	146319907	-	SSU98_0058	-	Heme/copper-type cytochrome/quinol oxidase, subunit 1
58	 35.85	-1	61396..62427	+	343	146319908	-	SSU98_0059	-	Heme/copper-type cytochrome/quinol oxidase, subunit 1
59	 43.43	0	62542..64482	+	646	146319909	mutL	SSU98_0060	-	DNA mismatch repair protein
60	 41.96	0	64521..65111	+	196	146319910	ruvA	SSU98_0061	-	Holliday junction DNA helicase motor protein
61	 42.81	0	65752..66405	+	217	146319911	-	SSU98_0062	-	3-methyladenine DNA glycosylase
62	 47.04	+1	66406..67623	+	405	146319912	-	SSU98_0063	-	nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
63	 43.92	0	67675..68826	+	383	146319913	-	SSU98_0064	-	RecA protein
64	 36.34	-1	69062..69460	+	132	146319914	spxA	SSU98_0065	-	transcriptional regulator Spx
65	 40.45	0	69560..69826	+	88	146319915	-	SSU98_0066	-	hypothetical protein
66	 41.19	0	69826..70245	+	139	146319916	-	SSU98_0067	-	Holliday junction resolvase-like protein
67	 41.43	0	70257..70577	+	106	146319917	-	SSU98_0068	-	hypothetical protein
68	 34.63	-1	70749..71363	+	204	146319918	-	SSU98_0069	-	hypothetical protein
69	 42.07	0	72026..72334	+	102	146319919	rpsJ	SSU98_0070	-	30S ribosomal protein S10
70	 39.53	0	72431..72769	+	112	146319920	-	SSU98_0071	-	50S ribosomal protein L3
71	 43.46	0	72822..73058	+	78	146319921	-	SSU98_0072	-	ribosomal protein L3
72	 43.75	0	73083..73706	+	207	146319922	rplD	SSU98_0073	-	50S ribosomal protein L4
73	 40.33	0	73706..74005	+	99	146319923	rplW	SSU98_0074	-	50S ribosomal protein L23
74	 45.56	0	74023..74856	+	277	146319924	rplB	SSU98_0075	-	50S ribosomal protein L2
75	 39.01	0	75107..75388	+	93	162139885	rpsS	SSU98_0076	-	30S ribosomal protein S19
76	 44.35	0	75406..75750	+	114	146319926	rplV	SSU98_0077	-	50S ribosomal protein L22
77	 43.43	0	75763..76416	+	217	146319927	rpsC	SSU98_0078	-	30S ribosomal protein S3
78	 43.96	0	76420..76833	+	137	146319928	rplP	SSU98_0079	-	50S ribosomal protein L16
79	 36.23	-1	76843..77049	+	68	146319929	-	SSU98_0080	-	50S ribosomal protein L29
80	 37.93	0	77073..77333	+	86	146319930	rpsQ	SSU98_0081	-	30S ribosomal protein S17
81	 44.99	0	77358..77726	+	122	146319931	rplN	SSU98_0082	-	50S ribosomal protein L14
82	 39.22	0	77865..78170	+	101	146319932	rplX	SSU98_0083	-	50S ribosomal protein L24
83	 41.25	0	78194..78736	+	180	146319933	rplE	SSU98_0084	-	50S ribosomal protein L5
84	 38.10	0	79272..79670	+	132	146319934	rpsH	SSU98_0085	-	30S ribosomal protein S8
85	 43.20	0	80136..80672	+	178	146319935	rplF	SSU98_0086	-	50S ribosomal protein L6
86	 44.54	0	80752..81117	+	121	146319936	rplR	SSU98_0087	-	50S ribosomal protein L18
87	 45.45	0	81136..81630	+	164	146319937	rpsE	SSU98_0088	-	30S ribosomal protein S5
88	 38.25	0	81645..81827	+	60	146319938	rpmD	SSU98_0089	-	50S ribosomal protein L30
89	 41.77	0	81906..82403	+	165	146319939	-	SSU98_0090	-	ribosomal protein L15
90	 37.32	0	82417..83094	+	225	146319940	-	SSU98_0091	-	preprotein translocase subunit SecY
91	 37.68	0	83107..83727	+	206	146319941	-	SSU98_0092	-	preprotein translocase subunit SecY
92	 40.81	0	83821..84462	+	213	146319942	adk	SSU98_0093	-	adenylate kinase
93	 40.64	0	84584..84802	+	72	146319943	infA	SSU98_0094	-	translation initiation factor IF-1
94	 40.98	0	84963..85328	+	121	146319944	rpsM	SSU98_0095	-	30S ribosomal protein S13
95	 44.79	0	85346..85729	+	127	146319945	-	SSU98_0096	-	30S ribosomal protein S11
96	 38.66	0	85774..86712	+	312	146319946	-	SSU98_0097	-	DNA-directed RNA polymerase subunit alpha
97	 41.60	0	86727..87113	+	128	146319947	rplQ	SSU98_0098	-	50S ribosomal protein L17
98	 45.45	0	93205..93303	-	32	146319949	-	SSU98_0100	-	hypothetical protein
99	 31.77	-2	93857..94813	-	318	146319950	-	SSU98_0101	-	hypothetical protein
100	 37.91	0	94818..94970	-	50	146319951	-	SSU98_0102	-	hypothetical protein
41.07	MEAN

4.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.