IslandPath Analysis: Lactobacillus helveticus DPC 4571



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.40   STD DEV: 3.87
Lactobacillus helveticus DPC 4571, complete genome - 1..2080931
1610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.60	0	187..1554	+	455	161506635	-	lhv_0001	-	chromosomal replication initiation protein
2	 34.66	0	1719..2849	+	376	161506636	-	lhv_0002	-	DNA polymerase III Beta chain
3	 36.36	0	3070..3300	+	76	161506637	-	lhv_0003	-	hypothetical protein
4	 37.23	0	3300..4427	+	375	161506638	-	lhv_0004	-	recombination protein F
5	 40.56	0	4428..6392	+	654	161506639	-	lhv_0005	-	DNA gyrase
6	 39.49	0	6403..8886	+	827	161506640	-	lhv_0006	-	DNA gyrase
7	 39.73	0	9105..9401	+	98	161506641	-	lhv_0007	-	30S ribosomal protein S6
8	 41.23	0	9447..9965	+	172	161506642	-	lhv_0008	-	single-stranded DNA-binding protein
9	 42.31	+1	9994..10227	+	77	161506643	-	lhv_0009	-	30S ribosomal protein S18
10	 39.31	0	10424..11677	+	417	161506644	-	lhv_0010	-	transposase
11	 33.66	0	16224..16832	+	202	161506645	-	lhv_0015	-	hypothetical protein
12	 40.80	0	16940..18961	+	673	161506646	-	lhv_0016	-	putative signalling protein
13	 39.69	0	18973..19428	+	151	161506647	-	lhv_0017	-	50S ribosomal protein L9
14	 41.72	+1	19459..20853	+	464	161506648	-	lhv_0018	-	replicative DNA helicase
15	 39.14	0	21090..22019	+	309	161506649	-	lhv_0019	-	putative alkylphosphonate ABC transporter
16	 38.97	0	22136..23413	-	425	161506650	-	lhv_0020	-	transposase
17	 38.71	0	23580..24509	+	309	161506651	-	lhv_0021	-	hypothetical protein
18	 41.60	+1	24741..25490	+	249	161506652	-	lhv_0022	-	fructokinase
19	 41.21	0	25778..26107	-	109	161506653	-	lhv_0024	-	hypothetical protein
20	 40.41	0	26184..27413	-	409	161506654	-	lhv_0025	-	hypothetical protein
21	 40.00	0	27497..28201	-	234	161506655	-	lhv_0026	-	hypothetical protein
22	 30.60	-1	28690..30516	+	608	161506656	-	lhv_0027	-	DNA methylase
23	 31.37	-1	30519..33530	+	1003	161506657	-	lhv_0028	-	Type III restriction-modification system restriction subunit
24	 36.34	0	33823..35052	-	409	161506658	-	lhv_0029	-	transposase
25	 38.57	0	35290..36549	-	419	161506659	-	lhv_0030	-	transposase
26	 34.25	0	36788..38089	+	433	161506660	-	lhv_0031	-	hypothetical protein
27	 35.94	0	38668..39318	+	216	161508224	-	lhv_2922	-	transposase ORF_A
28	 35.04	0	39251..40834	+	527	161508223	-	lhv_2921	-	transposase ORF_B
29	 33.55	0	42354..43754	+	466	161506661	-	lhv_0037	-	hypothetical protein
30	 33.59	0	43851..44624	+	257	161506662	-	lhv_0038	-	hypothetical protein
31	 38.15	0	44663..45223	-	186	161506663	-	lhv_0039	-	putative cobalamin adenosyltransferase
32	 39.81	0	45224..45748	-	174	161506664	-	lhv_0040	-	hypothetical protein
33	 33.82	0	45750..46160	-	136	161506665	-	lhv_0041	-	hypothetical protein
34	 41.66	+1	46181..48415	-	744	161506666	-	lhv_0042	-	ribonucleoside triphosphate reductase
35	 36.04	0	48670..49704	+	344	161506667	-	lhv_0043	-	putative permease
36	 37.87	0	49701..50273	+	190	161506668	-	lhv_0044	-	putative esterase
37	 43.02	+1	51693..52322	-	209	161506669	-	lhv_0047	-	phosphoglycerate mutase
38	 44.74	+1	52725..53846	+	373	161506670	-	lhv_0048	-	phosphoserine aminotransferase
39	 46.44	+2	53824..54990	+	388	161506671	-	lhv_0049	-	phosphoglycerate dehydrogenase
40	 41.59	+1	55158..55472	+	104	161506672	-	lhv_0050	-	small multidrug efflux protein
41	 41.60	+1	58040..58801	-	253	161506673	-	lhv_0054	-	ABC transporter ATP binding protein
42	 45.60	+2	58798..59694	-	298	161506674	-	lhv_0055	-	ABC transporter membrane spanning permease
43	 45.62	+2	59691..60683	-	330	161506675	-	lhv_0056	-	ABC transporter substrate binding protein
44	 38.98	0	61032..61739	+	235	161506676	-	lhv_0057	-	putative hydrolase
45	 33.52	-1	61717..62256	+	179	161506677	-	lhv_0058	-	S-layer protein
46	 32.28	-1	62271..62648	+	125	161506678	-	lhv_0059	-	hypothetical protein
47	 44.17	+1	62815..63672	+	285	161506679	-	lhv_0060	-	oxidoreductase
48	 42.99	+1	64011..65936	+	641	161506680	-	lhv_0061	-	translation elongation factor
49	 42.10	+1	66949..67998	-	349	161506681	-	lhv_0064	-	D-lactate dehydrogenase
50	 37.72	0	68089..68931	+	280	161506682	-	lhv_0065	-	aminoglycoside phosphotransferase:fructosamine kinase
51	 37.80	0	69386..70213	+	275	161506683	-	lhv_0066	-	exodeoxyribonuclease A
52	 36.69	0	71230..74061	+	943	161506684	-	lhv_0069	-	phage DEAD box family helicase
53	 36.70	0	74101..75111	-	336	161506685	-	lhv_0070	-	penicillin binding protein
54	 33.82	0	75401..75814	+	137	161506686	-	lhv_0071	-	peptide deformylase
55	 31.14	-1	82856..83494	-	212	161506687	-	lhv_0073	-	transcriptional regulator
56	 35.62	0	83646..83864	-	72	161506688	-	lhv_2203	-	putative steroid binding protein
57	 38.74	0	83952..84821	-	289	161506689	-	lhv_0074	-	phospho-beta-glycosidase
58	 37.08	0	84818..85645	-	275	161506690	-	lhv_0075	-	putative glycosyl transferase
59	 39.29	0	85779..86735	-	318	161506691	-	lhv_0076	-	putative glucosyl transferase
60	 41.94	+1	86754..87590	-	278	161506692	-	lhv_0077	-	putative glycosyl transferase
61	 27.59	-2	87686..88504	+	272	161506693	-	lhv_0078	-	transcriptional regulator
62	 44.27	+1	89363..90121	-	252	161506694	-	lhv_0080	-	hypothetical protein
63	 36.43	0	90244..90921	+	225	161506695	-	lhv_0081	-	hypothetical protein
64	 35.99	0	91127..92329	+	400	161506696	-	lhv_0082	-	surface layer protein
65	 38.30	0	92402..92824	-	140	161506697	-	lhv_0083	-	putative prophage repressor
66	 38.14	0	92821..93174	-	117	161506698	-	lhv_0084	-	putative transcriptional regulator
67	 37.04	0	93479..93802	+	107	161506699	-	lhv_0085	-	helveticin ORF 2
68	 31.50	-1	93822..94859	+	345	161506700	-	lhv_0086	-	helveticin
69	 32.71	-1	94938..95894	+	318	161506701	-	lhv_0087	-	putative surface layer protein
70	 36.40	0	96007..97149	+	380	161506702	-	lhv_0088	-	hypothetical protein
71	 42.83	+1	97728..98906	+	392	161506703	-	lhv_0091	-	transposase IS1201
72	 33.66	0	99421..100332	+	303	161506704	-	lhv_0092	-	hypothetical protein
73	 40.73	0	101415..102131	+	238	161506705	-	lhv_0095	-	putative response regulator
74	 40.39	0	102198..104054	+	618	161506706	-	lhv_0096	-	putative histidine kinase
75	 36.72	0	104035..105393	+	452	161506707	-	lhv_0097	-	hypothetical protein
76	 39.39	0	105396..106220	+	274	161506708	-	lhv_0098	-	hypothetical protein
77	 42.86	+1	106236..107033	+	265	161506709	-	lhv_0099	-	hypothetical protein
78	 41.71	+1	107120..108361	+	413	161506710	-	lhv_0100	-	HtrA-like serine protease
79	 43.54	+1	108826..109305	+	159	161506711	-	lhv_0101	-	SPOUT methyltransferase superfamily protein
80	 44.86	+1	109814..110698	-	294	161506712	-	lhv_0102	-	proline iminopeptidase
81	 41.90	+1	110707..111360	-	217	161506713	-	lhv_0103	-	putative ABC transporter permease component
82	 35.41	0	111364..112713	-	449	161506714	-	lhv_0104	-	putative ABC transporter ATPase component
83	 34.71	0	112871..113812	+	313	161506715	-	lhv_0105	-	putative regulatory protein
84	 41.81	+1	115481..116377	-	298	161506716	-	lhv_0108	-	heat shock protein HtpX
85	 36.01	0	116392..116952	-	186	161506717	-	lhv_0109	-	hypothetical protein
86	 37.85	0	117019..118125	-	368	161506718	-	lhv_0110	-	cation transporter
87	 34.79	0	118297..118707	+	136	161506719	-	lhv_0111	-	hypothetical protein
88	 41.84	+1	120509..120649	+	46	161506720	-	lhv_0115	-	hypothetical protein
89	 35.80	0	122912..123559	+	215	161506721	-	lhv_0120	-	putative hydrolase
90	 36.96	0	123569..124477	+	302	161506722	-	lhv_0121	-	hypothetical protein
91	 37.96	0	124530..125285	-	251	161506723	-	lhv_0122	-	amino acid ABC transporter ATP binding protein
92	 38.29	0	125285..126898	-	537	161506724	-	lhv_0123	-	amino acid ABC transporter permease protein
93	 41.07	0	127226..127858	-	210	161506725	-	lhv_0124	-	putative 3-methyladenine DNA glycosylase
94	 30.85	-1	127928..128290	+	120	161506726	-	lhv_0125	-	hypothetical protein
95	 38.40	0	128327..129115	-	262	161506727	-	lhv_0126	-	hypothetical protein
96	 36.43	0	129102..129617	-	171	161506728	-	lhv_0127	-	methylated-DNA-protein-cysteineS-methyltransferase
97	 32.20	-1	129669..130373	-	234	161506729	-	lhv_0128	-	NAD-dependent deacetylase
98	 33.33	-1	130465..130944	+	159	161506730	-	lhv_0129	-	hypothetical protein
99	 39.57	0	130939..132396	-	485	161506731	-	lhv_0130	-	cardiolipin synthase
100	 37.65	0	132416..133342	-	308	161506732	-	lhv_0131	-	hypothetical protein
37.40	MEAN

3.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.