version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 52.69 0 275..2779 + 834 117622296 thrA APECO1_1976 - bifunctional aspartokinase I/homeserine dehydrogenase I 2 55.63 0 2781..3713 + 310 117622297 thrB APECO1_1975 - homoserine kinase 3 52.84 0 3714..5000 + 428 117622298 thrC APECO1_1974 - threonine synthase 4 53.87 0 5214..5510 + 98 117622299 yaaX APECO1_1973 - hypothetical protein 5 49.03 0 5550..6326 - 258 117622300 yaaA APECO1_1972 - hypothetical protein 6 53.39 0 6396..7826 - 476 117622301 yaaJ APECO1_1971 - putative transporter YaaJ 7 51.99 0 8105..9058 + 317 162317588 talB APECO1_1970 - transaldolase B 8 54.25 0 9173..9760 + 195 117622303 mogA APECO1_1969 - molybdenum cofactor biosynthesis protein 9 52.73 0 9965..10531 - 188 117622304 yaaH APECO1_1968 - hypothetical protein 10 50.98 0 10680..11393 - 237 117622305 yaaW APECO1_1967 - hypothetical protein 11 47.65 0 11419..11823 - 134 117622306 yaaI APECO1_1966 - hypothetical protein 12 51.12 0 12195..14111 + 638 117622307 dnaK APECO1_1965 - molecular chaperone DnaK 13 54.44 0 14170..15330 + 386 117622308 dnaJ APECO1_1964 - chaperone protein DnaJ 14 40.55 -2 16199..16960 + 253 117622309 - APECO1_1963 - hypothetical protein 15 44.95 -1 16950..18473 + 507 117622310 aslA APECO1_1962 - putative arylsulfatase 16 43.52 -1 18596..19861 + 421 117622311 - APECO1_1961 - hypothetical protein 17 50.47 0 20096..21262 + 388 117622312 nhaA APECO1_1960 - pH-dependent sodium/proton antiporter 18 47.46 0 21322..22227 + 301 117622313 nhaR APECO1_1959 - transcriptional activator NhaR 19 52.97 0 22915..23856 + 313 117622314 ribF APECO1_1958 - bifunctional riboflavin kinase/FMN adenylyltransferase 20 54.46 0 23899..26715 + 938 117622315 ileS APECO1_1957 - isoleucyl-tRNA synthetase 21 52.32 0 26715..27209 + 164 117622316 lspA APECO1_1956 - lipoprotein signal peptidase 22 54.67 0 27317..27766 + 149 117622317 slpA APECO1_1955 - putative FKBX-type 16KD peptidyl-prolyl cis-trans isomerase 23 55.21 0 27768..28718 + 316 117622318 ispH APECO1_1954 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 24 55.08 0 28784..29698 + 304 117622319 rihC APECO1_1953 - ribonucleoside hydrolase RihC 25 44.26 -1 29721..30086 + 121 117622320 - APECO1_1952 - hypothetical protein 26 53.28 0 30247..31068 + 273 117622321 dapB APECO1_1951 - dihydrodipicolinate reductase 27 52.89 0 31497..32672 + 391 117622322 carA APECO1_1950 - carbamoyl phosphate synthase small subunit 28 55.87 +1 32690..35911 + 1073 117622323 carB APECO1_1949 - carbamoyl phosphate synthase large subunit 29 45.75 -1 36135..36593 + 152 117622324 - APECO1_1948 - putative transposase 30 44.31 -1 36778..37278 + 166 117622325 caiF APECO1_1947 - DNA-binding transcriptional activator CaiF 31 55.23 0 37397..38008 - 203 117622326 caiE APECO1_1946 - carnitine operon protein CaiE 32 52.68 0 37993..38886 - 297 117622327 caiD APECO1_1945 - carnitinyl-CoA dehydratase 33 50.80 0 38887..40455 - 522 117622328 caiC APECO1_1944 - putative crotonobetaine/carnitine-CoA ligase 34 52.79 0 40513..41730 - 405 117622329 caiB APECO1_1943 - crotonobetainyl-CoA:carnitine CoA-transferase 35 53.46 0 41858..43000 - 380 117622330 caiA APECO1_1942 - crotonobetainyl-CoA dehydrogenase 36 52.34 0 43031..44545 - 504 117622331 caiT APECO1_1941 - L-carnitine/gamma-butyrobetaine antiporter 37 50.84 0 44955..45788 + 277 117622332 fixA APECO1_1940 - putative electron transfer flavoprotein FixA 38 56.79 +1 45803..46744 + 313 117622333 fixB APECO1_1939 - putative electron transfer flavoprotein FixB 39 54.55 0 46795..48081 + 428 117622334 ydiS APECO1_1938 - putative oxidoreductase FixC 40 53.45 0 48424..49755 + 443 117622335 yaaU APECO1_1937 - metabolite transport protein YaaU 41 54.24 0 49863..50393 + 176 117622336 yabF APECO1_1936 - glutathione-regulated potassium-efflux system ancillary protein KefF 42 55.45 0 50314..52248 + 644 117622337 kefC APECO1_1935 - glutathione-regulated potassium-efflux system protein KefC 43 52.03 0 52305..52919 + 204 117622338 folA APECO1_1934 - dihydrofolate reductase 44 55.36 0 53553..54401 - 282 117622339 apaH APECO1_1933 - diadenosine tetraphosphatase 45 52.12 0 54408..54785 - 125 117622340 apaG APECO1_1932 - ApaG 46 53.77 0 54788..55609 - 273 117622341 ksgA APECO1_1931 - dimethyladenosine transferase 47 55.76 +1 55606..56595 - 329 117622342 pdxA APECO1_1930 - 4-hydroxythreonine-4-phosphate dehydrogenase 48 53.92 0 56595..57881 - 428 117622343 surA APECO1_1929 - peptidyl-prolyl cis-trans isomerase SurA 49 51.76 0 57934..60288 - 784 117622344 imp APECO1_1928 - organic solvent tolerance protein 50 51.82 0 60450..61358 + 302 117622345 djlA APECO1_1927 - DNA-J like membrane chaperone protein 51 54.39 0 61508..62167 - 219 117622346 rluA APECO1_1926 - 23S rRNA/tRNA pseudouridine synthase A 52 55.25 0 62179..65085 - 968 117622347 hepA APECO1_1925 - ATP-dependent helicase HepA 53 55.57 0 65249..67600 - 783 117622348 polB APECO1_1924 - DNA polymerase II 54 55.46 0 67675..68370 - 231 117622349 araD APECO1_1923 - L-ribulose-5-phosphate 4-epimerase 55 55.09 0 68655..70157 - 500 117622350 araA APECO1_1922 - L-arabinose isomerase 56 58.20 +1 70168..71868 - 566 117622351 araB APECO1_1921 - ribulokinase 57 52.06 0 72156..73052 + 298 117622352 araC APECO1_1920 - DNA-binding transcriptional regulator AraC 58 33.33 -2 73842..74414 + 190 117622353 - APECO1_1919 - hypothetical protein 59 30.97 -2 74421..74843 + 140 117622354 - APECO1_1918 - hypothetical protein 60 54.38 0 74998..75762 + 254 117622355 yabI APECO1_1917 - putative integral membrane protein YabI 61 56.51 +1 75876..76574 - 232 117622356 thiQ APECO1_1916 - thiamine transporter ATP-binding subunit 62 57.98 +1 76558..78168 - 536 117622357 thiP APECO1_1915 - thiamine transporter membrane protein 63 51.31 0 78144..79139 - 331 117622358 tbpA APECO1_1914 - thiamine transporter substrate binding subunit 64 55.25 0 79291..80946 - 551 117622359 sgrR APECO1_1913 - transcriptional regulator SgrR 65 51.82 0 81274..81879 - 201 117622360 leuD APECO1_1912 - isopropylmalate isomerase small subunit 66 55.53 0 81890..83290 - 466 117622361 leuC APECO1_1911 - isopropylmalate isomerase large subunit 67 54.89 0 83293..84387 - 364 117622362 leuB APECO1_1910 - 3-isopropylmalate dehydrogenase 68 52.74 0 84384..85955 - 523 117622363 leuA APECO1_1909 - 2-isopropylmalate synthase 69 45.48 -1 86707..87735 + 342 117622364 leuO APECO1_1908 - leucine transcriptional activator 70 52.73 0 87963..89777 + 604 117622365 ilvI APECO1_1907 - acetolactate synthase 3 catalytic subunit 71 50.00 0 89750..90271 + 173 117622366 ilvH APECO1_1906 - acetolactate synthase 3 regulatory subunit 72 55.32 0 90451..91455 + 334 117622367 fruR APECO1_1905 - DNA-binding transcriptional regulator FruR 73 54.85 0 92418..93458 + 346 117622368 mraW APECO1_1904 - S-adenosyl-methyltransferase MraW 74 50.55 0 93455..93820 + 121 117622369 ftsL APECO1_1903 - cell division protein FtsL 75 53.65 0 93836..95602 + 588 117622370 ftsI APECO1_1902 - peptidoglycan synthetase FtsI precursor 76 56.85 +1 95589..97076 + 495 117622371 murE APECO1_1901 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 77 54.08 0 97073..98431 + 452 117622372 murF APECO1_1900 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 78 53.28 0 98425..99507 + 360 117622373 mraY APECO1_1899 - phospho-N-acetylmuramoyl-pentapeptide-transferase 79 55.43 0 99510..100826 + 438 117622374 murD APECO1_1898 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 80 52.69 0 100826..102070 + 414 117622375 ftsW APECO1_1897 - cell division protein FtsW 81 55.90 +1 102067..103134 + 355 117622376 murG APECO1_1896 - N-acetylglucosaminyl transferase 82 54.13 0 103188..104663 + 491 117622377 murC APECO1_1895 - UDP-N-acetylmuramate--L-alanine ligase 83 51.36 0 104656..105576 + 306 117622378 ddl APECO1_1894 - D-alanine--D-alanine ligase 84 53.07 0 105578..106408 + 276 117622379 ftsQ APECO1_1893 - cell division protein FtsQ 85 51.78 0 106405..107667 + 420 117622380 ftsA APECO1_1892 - cell division protein FtsA 86 53.73 0 107728..108879 + 383 117622381 ftsZ APECO1_1891 - cell division protein FtsZ 87 50.98 0 108980..109897 + 305 117622382 lpxC APECO1_1890 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 88 52.72 0 110053..110640 + 195 117622383 secM APECO1_1889 - SecA regulator SecM 89 52.14 0 110702..113407 + 901 117622384 secA APECO1_1888 - preprotein translocase subunit SecA 90 49.37 0 113467..113865 + 132 117622385 mutT APECO1_1887 - nucleoside triphosphate pyrophosphohydrolase 91 51.61 0 114160..114903 - 247 117622386 yacF APECO1_1886 - hypothetical protein 92 52.33 0 114903..115523 - 206 117622387 coaE APECO1_1885 - dephospho-CoA kinase 93 51.44 0 115748..116791 + 347 117622388 guaC APECO1_1884 - guanosine 5'-monophosphate oxidoreductase 94 52.12 0 116826..118028 - 400 117622389 hofC APECO1_1883 - type IV pilin biogenesis protein 95 53.39 0 118018..119403 - 461 117622390 hofB APECO1_1882 - hypothetical protein 96 52.61 0 119413..119853 - 146 117622391 pppD APECO1_1881 - putative major pilin subunit 97 52.35 0 120057..120992 - 311 117622392 nadC APECO1_1880 - quinolinate phosphoribosyltransferase 98 54.53 0 121038..121589 + 183 117622393 ampD APECO1_1879 - N-acetyl-anhydromuranmyl-L-alanine amidase 99 51.46 0 121586..122440 + 284 117622394 ampE APECO1_1878 - regulatory protein AmpE 100 52.59 0 122483..123853 - 456 117622395 aroP APECO1_1877 - aromatic amino acid transporter 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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