IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.73   STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.14	0	323..1687	+	454	104773258	dnaA	Ldb0001	-	chromosomal replication initiator protein dnaA
2	 52.93	0	1868..2995	+	375	104773259	dnaN	Ldb0002	-	DNA polymerase III, beta chain
3	 49.57	0	3217..3450	+	77	104773260	-	Ldb0003	-	hypothetical protein
4	 57.16	+1	3450..4595	+	381	104773261	recF	Ldb0004	-	recombination protein F
5	 56.88	+1	4579..6540	+	653	104773262	gyrB	Ldb0005	-	DNA gyrase, subunit B
6	 57.40	+1	6553..9024	+	823	104773263	gyrA	Ldb0006	-	DNA gyrase, subunit A
7	 44.22	-1	9240..9533	+	97	104773264	rpsF	Ldb0007	-	30S ribosomal protein S6
8	 53.65	0	9574..10149	+	191	104773265	ssb	Ldb0008	-	single-stranded DNA-binding protein
9	 46.84	0	10176..10412	+	78	104773266	rpsR	Ldb0009	-	30S ribosomal protein S18
10	 56.97	+1	10553..12574	+	673	104773267	-	Ldb0010	-	putative signalling protein
11	 51.97	0	12597..13052	+	151	104773268	rplI	Ldb0011	-	50S ribosomal protein L9
12	 55.00	0	13076..14446	+	456	104773269	dnaC	Ldb0012	-	replicative DNA helicase DnaC
13	 53.89	0	14495..15652	-	385	104773270	-	Ldb0013	-	hypothetical protein
14	 36.89	-2	15760..17865	-	701	104773271	-	Ldb0014	-	ABC transporter, ATP-binding/permease protein
15	 44.36	-1	18015..18404	+	129	104773272	-	Ldb0015	-	hypothetical protein
16	 50.22	0	18417..18641	+	74	104773273	-	Ldb0016	-	hypothetical protein
17	 54.61	0	18752..19456	-	234	104773274	-	Ldb0017	-	hypothetical protein
18	 50.43	0	20578..21507	+	309	104773275	-	Ldb0021	-	ABC transporter, ATP-binding protein
19	 46.74	0	23057..23839	-	260	104773276	-	Ldb0026	-	two-component system, response regulator
20	 34.52	-2	25332..25499	+	55	104773277	-	Ldb0029	-	hypothetical protein
21	 41.67	-1	25521..25688	+	55	104773278	-	Ldb0030	-	hypothetical protein
22	 52.16	0	25692..27401	+	569	104773279	-	Ldb0031	-	ABC transporter, ATP-binding/permease protein
23	 51.44	0	27408..29909	+	833	104773280	-	Ldb0032	-	putative Ser/Thr protein kinase
24	 43.21	-1	29929..30090	+	53	104773281	-	Ldb0033	-	hypothetical protein
25	 54.77	0	30393..31031	+	212	104773282	-	Ldb0035	-	ABC transporter, ATP-binding protein
26	 53.91	0	31028..31795	+	255	104773283	-	Ldb0036	-	ABC transporter, permease protein
27	 39.68	-2	31798..32049	+	83	104773284	-	Ldb0037	-	hypothetical protein
28	 51.45	0	32270..35089	-	939	104773285	-	Ldb0038	-	hypothetical protein
29	 57.17	+1	37130..37687	+	185	104773286	-	Ldb0043	-	hypothetical protein
30	 58.24	+1	37714..40479	-	921	104773287	-	Ldb0044	-	putative helicase
31	 53.12	0	41423..41902	+	159	104773288	-	Ldb0047	-	hypothetical protein
32	 57.18	+1	42011..42421	+	136	104773289	-	Ldb0048	-	putative transcriptional regulator
33	 50.26	0	43468..43656	+	62	104773290	-	Ldb0052	-	4-oxalocrotonate tautomerase
34	 48.52	0	44122..44694	+	190	104773291	-	Ldb0053	-	hypothetical protein
35	 31.93	-2	50306..50662	+	118	104773292	-	Ldb0057	-	hypothetical protein
36	 53.06	0	51016..51978	+	320	104773293	pmi	Ldb0059	-	mannose-6-phosphate isomerase
37	 47.42	0	52321..52611	-	96	104773294	-	Ldb0061	-	hypothetical protein
38	 56.44	+1	52608..52910	-	100	104773295	-	Ldb0062	-	hypothetical protein
39	 51.91	0	52771..53373	-	200	104773296	-	Ldb0063	-	hypothetical protein
40	 52.29	0	53731..54495	+	254	104773297	-	Ldb0064	-	hypothetical protein
41	 56.96	+1	54492..55274	+	260	104773298	-	Ldb0065	-	hypothetical protein
42	 54.53	0	55325..55810	-	161	104773299	-	Ldb0066	-	putative RNA polymerase sigma factor
43	 53.25	0	56238..56960	-	240	104773300	glpF	Ldb0067	-	glycerol uptake facilitator
44	 53.38	0	60753..61700	+	315	104773301	-	Ldb0071	-	glycosyl transferase
45	 53.83	0	61728..62249	-	173	104773302	-	Ldb0072	-	hypothetical protein
46	 56.00	+1	62415..63248	+	277	104773303	-	Ldb0073	-	hypothetical protein
47	 51.83	0	63195..63740	-	181	104773304	-	Ldb0074	-	hypothetical protein
48	 54.70	0	64034..64618	+	194	104773305	-	Ldb0075	-	hypothetical protein
49	 56.88	+1	64615..65268	+	217	104773306	-	Ldb0076	-	putative fructose-2,6-bisphosphatase
50	 46.51	0	65344..65472	+	42	104773307	-	Ldb0077	-	hypothetical protein
51	 58.44	+1	65591..66064	+	157	104773308	-	Ldb0078	-	hypothetical protein
52	 47.40	0	66424..66615	+	63	104773309	-	Ldb0079	-	hypothetical protein
53	 27.37	-2	66913..67197	+	94	104773310	-	Ldb0080	-	hypothetical protein
54	 42.86	-1	67922..68005	+	27	104773311	-	Ldb0083	-	hypothetical protein
55	 38.10	-2	67981..68043	+	20	104773312	-	Ldb0084	-	hypothetical protein
56	 60.26	+1	68069..68614	-	181	104773313	-	Ldb0085	-	hypothetical protein
57	 54.62	0	70250..70963	+	237	104773314	-	Ldb0089	-	HAD family hydrolase
58	 57.37	+1	71709..72536	+	275	104773315	exoA	Ldb0092	-	exodeoxyribonuclease III
59	 50.10	0	72616..73092	+	158	104773316	-	Ldb0093	-	hypothetical protein
60	 56.99	+1	73279..74187	+	302	104773317	-	Ldb0094	-	L-2-hydroxyisocaproate dehydrogenase
61	 56.53	+1	74306..75163	+	285	104773318	-	Ldb0095	-	aldo/keto reductase family oxidoreductase
62	 55.99	+1	75459..77678	+	739	104773319	rtpR	Ldb0096	-	ribonucleoside-triphosphate reductase
63	 45.59	0	77743..78558	+	271	104773320	-	Ldb0097	-	hypothetical protein
64	 54.28	0	78560..79108	+	182	104773321	-	Ldb0098	-	hypothetical protein
65	 57.62	+1	79101..79664	+	187	104773322	-	Ldb0099	-	hypothetical protein
66	 45.91	0	79876..80901	+	341	104773323	-	Ldb0100	-	transposase
67	 48.00	0	81170..82171	-	333	104773324	ldhA	Ldb0101	-	D-lactate dehydrogenase
68	 52.30	0	82462..83853	-	463	104773325	-	Ldb0102	-	putative oxidoreductase
69	 55.32	0	84046..84477	+	143	104773326	-	Ldb0103	-	peptide deformylase
70	 55.10	0	84520..85401	-	293	104773327	-	Ldb0104	-	substrate binding protein
71	 56.46	+1	85429..85908	-	159	104773328	luxS	Ldb0105	-	S-ribosylhomocysteinase
72	 54.06	0	89252..90829	-	525	104773329	-	Ldb0110	-	ABC transporter, ATP-binding/permease protein
73	 52.14	0	90826..92388	-	520	104773330	-	Ldb0111	-	ABC transporter, ATP-binding/permease protein
74	 48.86	0	94511..95212	-	233	104773331	-	Ldb0114	-	hypothetical protein
75	 52.35	0	95439..96353	-	304	104773332	-	Ldb0115	-	LysR family transcriptional regulator
76	 53.07	0	96485..97609	+	374	104773333	metE	Ldb0116	-	putative methionine synthase
77	 38.00	-2	97866..98486	+	206	104773334	-	Ldb0117	-	hypothetical protein
78	 46.15	0	98549..98743	+	64	104773335	-	Ldb0118	-	hypothetical protein
79	 54.53	0	98916..99854	+	312	104773336	glcK	Ldb0119	-	glucokinase
80	 55.74	0	99905..100828	-	307	104773337	ldh	Ldb0120	-	L-lactate dehydrogenase
81	 56.15	+1	101547..102773	-	408	104773338	-	Ldb0121	-	permease
82	 54.00	0	103767..104603	+	278	104773339	-	Ldb0123	-	hypothetical protein
83	 53.33	0	104738..105652	-	304	104773340	-	Ldb0124	-	LysR family transcriptional regulator
84	 53.37	0	105837..107498	+	553	104773341	-	Ldb0125	-	hypothetical protein
85	 54.40	0	107955..108818	-	287	104773342	arbZ	Ldb0128	-	phospho-beta-glycosidase
86	 54.18	0	109815..110639	-	274	104773343	arbX	Ldb0132	-	putative glycosyltransferase
87	 55.08	0	110667..111443	-	258	104773344	-	Ldb0133	-	hypothetical protein
88	 52.54	0	111702..112430	+	242	104773345	-	Ldb0135	-	two-component system, response regulator
89	 55.12	0	112477..114372	+	631	104773346	-	Ldb0136	-	two-component system, sensor histidine kinase
90	 53.56	0	114353..115909	+	518	104773347	-	Ldb0137	-	hypothetical protein
91	 54.06	0	115910..116710	+	266	104773348	-	Ldb0138	-	hypothetical protein
92	 55.89	0	116729..117526	+	265	104773349	-	Ldb0139	-	metallo-beta-lactamase superfamily hydrolase
93	 53.43	0	117621..118904	+	427	104773350	htrA	Ldb0140	-	HtrA-like serine protease
94	 52.71	0	119397..119876	+	159	104773351	-	Ldb0141	-	SPOUT methyltransferase superfamily protein
95	 51.39	0	120005..120148	+	47	104773352	-	Ldb0142	-	hypothetical protein
96	 56.85	+1	120108..120443	+	111	104773353	-	Ldb0143	-	hypothetical protein
97	 37.80	-2	120461..120841	+	126	104773354	-	Ldb0144	-	hypothetical protein
98	 48.25	0	120940..121281	+	113	104773355	-	Ldb0145	-	hypothetical protein
99	 51.83	0	122590..123243	-	217	104773356	-	Ldb0150	-	ABC transporter, permease protein
100	 54.87	0	123268..124623	-	451	104773357	-	Ldb0151	-	ABC transporter, ATP-binding protein
50.73	MEAN

5.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.