IslandPath Analysis: Mycoplasma arthritidis 158L3-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.28   STD DEV: 3.34
Mycoplasma arthritidis 158L3-1, complete genome - 1..820453
631 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.40	0	107..1471	+	454	193216431	dnaA	MARTH_orf001	-	chromosomal replication initiator protein DnaA
2	 31.60	0	1484..2581	+	365	193216432	dnaN	MARTH_orf003	-	DNA polymerase III, beta subunit
3	 32.03	0	2584..2814	+	76	193216433	-	MARTH_orf004	-	hypothetical protein
4	 33.84	0	2872..3069	+	65	193216434	rpmB	MARTH_orf005	-	ribosomal protein L28
5	 33.07	0	3191..3952	+	253	193216435	-	MARTH_orf006	-	TatD-related DNase
6	 31.40	0	3952..4728	+	258	193216436	ksgA	MARTH_orf007	-	dimethyladenosine transferase
7	 32.32	0	4863..5159	+	98	193216437	acpS	MARTH_orf008	-	holo-acyl carrier protein synthase: phosphopantethiene-protein transferase
8	 33.08	0	5170..5967	+	265	193216438	plsC	MARTH_orf009	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
9	 32.36	0	5967..6788	+	273	193216439	scpA	MARTH_orf010	-	segregation and condensation protein A
10	 32.85	0	6778..7398	+	206	193216440	scpB	MARTH_orf011	-	segregation and condensation protein B
11	 28.90	0	7391..8224	+	277	193216441	rluC	MARTH_orf012	-	ribosomal large subunit pseudouridine synthase C
12	 30.00	0	8239..8538	+	99	193216442	gatC	MARTH_orf013	-	glutamyl-tRNA amidotransferase subunit C
13	 32.88	0	8531..9865	+	444	193216443	gatA	MARTH_orf014	-	glutamyl-tRNA amidotransferase subunit A
14	 30.22	0	9858..11270	+	470	193216444	gatB	MARTH_orf015	-	glutamyl-tRNA amidotransferase subunit B
15	 31.36	0	11277..12392	+	371	193216445	-	MARTH_orf016	-	ribonuclease BN-like family enzyme
16	 32.64	0	12463..13470	+	335	193216446	-	MARTH_orf017	-	hypothetical protein
17	 29.06	0	13472..18367	+	1631	193216447	oppF-valS	MARTH_orf019	-	fusion of oligopeptide transport protein OppF and Valyl-tRNA synthetase
18	 34.33	0	18473..20386	+	637	193216448	parE	MARTH_orf020	-	topoiosmerase IV subunit B
19	 31.72	0	20405..23254	+	949	193216449	parC	MARTH_orf021	-	topoiosmerase IV subunit A
20	 39.84	+2	23299..23421	+	40	193216450	-	MARTH_orf022	-	hypothetical protein
21	 32.31	0	23536..24909	+	457	193216451	argE	MARTH_orf023	-	acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase
22	 32.44	0	25190..25414	-	74	193216452	-	MARTH_orf024	-	hypothetical protein
23	 31.43	0	25416..26309	-	297	193216453	-	MARTH_orf025	-	hypothetical protein
24	 34.22	0	26313..28115	-	600	193216454	lepA	MARTH_orf026	-	translation factor LepA
25	 32.95	0	28191..31085	-	964	193216455	mgtA1	MARTH_orf027	-	cation-transporting P-type ATPase
26	 31.58	0	31212..32009	-	265	193216456	-	MARTH_orf028	-	COF family HAD hydrolase protein
27	 36.33	+1	32056..32355	-	99	193216457	trxA1	MARTH_orf029	-	thioredoxin family member
28	 34.00	0	32715..33014	-	99	193216458	trxA2	MARTH_orf030	-	thioredoxin family member
29	 32.56	0	33042..34472	-	476	193216459	proS	MARTH_orf031	-	prolyl-tRNA synthetase
30	 21.97	-2	34500..34631	-	43	193216460	-	MARTH_orf032	-	hypothetical protein
31	 35.77	+1	34663..35853	-	396	193216461	deoB	MARTH_orf033	-	phosphopentomutase
32	 32.49	0	36040..37458	+	472	193216462	pyk	MARTH_orf034	-	pyruvate kinase
33	 28.45	0	38568..39284	+	238	193216463	mam	MARTH_orf036	-	superantigen MAM
34	 33.01	0	39389..41533	-	714	193216464	clpA	MARTH_orf037	-	ATP-dependent Clp protease, ATPase subunit
35	 29.58	0	41767..42219	+	150	193216465	-	MARTH_orf040	-	hypothetical membrane protein
36	 32.84	0	42212..43015	+	267	193216466	atpB	MARTH_orf041	-	ATP synthase A chain
37	 42.49	+2	43049..43321	+	90	193216467	atpE	MARTH_orf042	-	ATP synthase C chain
38	 26.74	-1	43343..43873	+	176	193216468	atpF	MARTH_orf043	-	ATP synthase B chain
39	 26.85	-1	43878..44417	+	179	193216469	atpH	MARTH_orf044	-	ATP synthase delta subunit
40	 36.62	+1	44436..46019	+	527	193216470	atpA1	MARTH_orf046	-	ATP synthase alpha subunit
41	 30.71	0	45998..46873	+	291	193216471	atpG	MARTH_orf047	-	ATP synthase gamma subunit
42	 37.70	+1	46903..48414	+	503	193216472	atpD1	MARTH_orf048	-	ATP synthase beta subunit
43	 28.61	0	48401..48760	+	119	193216473	atpC	MARTH_orf049	-	ATP synthase epsilon subunit
44	 36.24	+1	48824..49510	-	228	193216474	ktrA	MARTH_orf051	-	potassium uptake protein
45	 29.71	0	49606..50157	-	183	193216475	frr	MARTH_orf052	-	ribosome recycling factor
46	 34.85	+1	50161..50883	-	240	193216476	pyrH	MARTH_orf053	-	uridylate kinase
47	 30.28	0	51213..58223	-	2336	193216477	mspA	MARTH_orf057	-	massive surface protein MspA
48	 32.89	0	58616..58843	-	75	193216478	-	MARTH_orf058	-	hypothetical protein
49	 32.77	0	58843..59898	-	351	193216479	ftsY	MARTH_orf059	-	cell division protein
50	 35.06	+1	60252..61175	+	307	193216480	rpsB	MARTH_orf061	-	ribosomal protein S2
51	 35.04	+1	61196..62074	+	292	193216481	tsf	MARTH_orf063	-	elongation factor Ts
52	 31.45	0	62301..63308	-	335	193216482	-	MARTH_orf064	-	hypothetical lipoprotein
53	 28.26	0	63325..65178	-	617	193216483	-	MARTH_orf065	-	hypothetical lipoprotein
54	 30.22	0	65491..66837	+	448	193216484	-	MARTH_orf066	-	hypothetical protein
55	 25.77	-1	66850..67563	+	237	193216485	-	MARTH_orf067	-	hypothetical protein
56	 24.20	-2	67661..68383	+	240	193216486	-	MARTH_orf068	-	hypothetical protein
57	 27.00	-1	68450..69160	+	236	193216487	-	MARTH_orf069	-	hypothetical protein
58	 27.36	-1	69183..69902	+	239	193216488	-	MARTH_orf070	-	hypothetical protein
59	 32.40	0	70125..71090	+	321	193216489	-	MARTH_orf071	-	hypothetical protein
60	 29.64	0	71114..73657	+	847	193216490	-	MARTH_orf072	-	hypothetical lipoprotein
61	 32.20	0	73670..74110	+	146	193216491	-	MARTH_orf074	-	hypothetical lipoprotein
62	 31.91	0	74155..75555	-	466	193216492	munA	MARTH_orf075	-	membrane nuclease A
63	 34.90	+1	75635..77617	-	660	193216493	uvrB	MARTH_orf076	-	excinuclease ABC subunit B
64	 27.53	-1	77723..78463	+	246	193216494	-	MARTH_orf079	-	conserved hypothetical protein, possible DNA alkylation repair enzyme
65	 32.96	0	78519..79328	+	269	193216495	-	MARTH_orf080	-	hypothetical lipoprotein
66	 30.71	0	79419..79799	-	126	193216496	vapD	MARTH_orf081	-	virulence-associated protein D
67	 35.82	+1	80145..80426	-	93	193216497	-	MARTH_orf082	-	hypothetical protein
68	 33.33	0	80440..80766	-	108	193216498	-	MARTH_orf083	-	carboxymuconolactone decarboxylase family protein
69	 27.09	-1	80944..81792	-	282	193216499	-	MARTH_orf085	-	MAA2-related membrane protein
70	 28.13	0	83000..83614	-	204	193216500	trmB	MARTH_orf090	-	tRNA (guanine-N(7)-)-methyltransferase
71	 30.66	0	83767..84402	+	211	193216501	-	MARTH_orf091	-	RNAse G and E associated domain containing protein
72	 31.14	0	84523..85116	-	197	193216502	nusG	MARTH_orf093	-	transcription antitermination protein
73	 30.42	0	85134..85373	-	79	193216503	-	MARTH_orf094	-	hypothetical protein
74	 30.61	0	85373..85519	-	48	193216504	rpmG1	MARTH_orf096	-	ribosomal protein L33
75	 25.13	-1	85620..87302	+	560	193216505	-	MARTH_orf097	-	hypothetical protein
76	 31.15	0	87313..88458	+	381	193216506	thiI	MARTH_orf098	-	thiamine biosynthesis protein
77	 28.03	0	88525..90222	-	565	193216507	-	MARTH_orf103	-	ABC-type phosphate/phosphonate transport system, permease component
78	 30.97	0	90215..91357	-	380	193216508	-	MARTH_orf104	-	P37-like ABC transporter substrate-binding lipoprotein
79	 26.88	-1	91449..93338	+	629	193216509	-	MARTH_orf106	-	hypothetical protein
80	 29.63	0	93338..93688	+	116	193216510	rpsA	MARTH_orf107	-	ribosomal protein S1
81	 32.05	0	93678..95000	+	440	193216511	pgiB	MARTH_orf108	-	glucose-6-phosphate isomerase
82	 35.31	+1	94993..95955	+	320	193216512	ldh	MARTH_orf109	-	L-lactate dehydrogenase
83	 30.18	0	96118..96783	+	221	193216513	-	MARTH_orf110	-	ABC-type phosphate/phosphonate transport system, ATP-binding protein
84	 33.85	0	96962..99697	+	911	193216514	mgtA2	MARTH_orf111	-	cation-translocating P-type ATPase
85	 34.97	+1	99966..100940	+	324	193216515	prsA	MARTH_orf112	-	phosphoribosylpyrophosphate synthetase
86	 28.16	0	100915..101436	+	173	193216516	gidB1	MARTH_orf113	-	glucose-inhibited division protein B
87	 30.00	0	101446..101625	+	59	193216517	gidB2	MARTH_orf114	-	glucose-inhibited division protein B
88	 32.76	0	101748..110081	+	2777	193216518	-	MARTH_orf117	-	ABC transporter permease protein
89	 33.89	0	110081..110980	+	299	193216519	-	MARTH_orf119	-	ABC transporter ATP-binding protein
90	 33.33	0	111045..111365	+	106	193216520	-	MARTH_orf120	-	hypothetical protein
91	 32.74	0	111645..112319	+	224	193216521	-	MARTH_orf121	-	nitroreductase family protein
92	 27.49	-1	112533..113354	-	273	193216522	-	MARTH_orf122	-	LicD-family phosphotransferase
93	 32.31	0	113591..115732	+	713	193216523	-	MARTH_orf123	-	P80-related membrane protein
94	 31.43	0	115749..117482	+	577	193216524	-	MARTH_orf125	-	P60-related lipoprotein
95	 32.41	0	117486..117809	+	107	193216525	-	MARTH_orf126	-	HINT (histidine triad nucleotide-binding protein) family member
96	 31.83	0	117882..118544	+	220	193216526	recO	MARTH_orf127	-	recombinational DNA repair protein O
97	 33.84	0	118584..120368	-	594	193216527	-	MARTH_orf128	-	metallo-beta-lactamase superfamily protein
98	 36.97	+1	120689..121732	+	347	193216528	argF	MARTH_orf129	-	ornithine carbamoyltransferase
99	 38.34	+2	121735..122673	+	312	193216529	arcC	MARTH_orf130	-	carbamate kinase
100	 31.59	0	122719..123408	-	229	193216530	spoU	MARTH_orf131	-	SpoU class tRNA/rRNA methyltransferase
31.28	MEAN

3.34	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.