IslandPath Analysis: Mycobacterium tuberculosis CDC1551



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.22   STD DEV: 3.49
Mycobacterium tuberculosis CDC1551, complete genome - 1..4403837
4189 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.92	-1	1..1524	+	507	15839373	dnaA	MT0001	-	chromosomal replication initiation protein
2	 59.97	-1	2052..3260	+	402	15839374	dnaN	MT0002	-	DNA polymerase III subunit beta
3	 60.02	-1	3280..4437	+	385	15839375	recF	MT0003	-	recombination protein F
4	 66.13	0	4434..4997	+	187	15839376	-	MT0004	-	hypothetical protein
5	 60.12	-1	5207..7267	+	686	15839377	gyrB	MT0005	-	DNA gyrase subunit B
6	 63.85	0	7302..9818	+	838	15839378	gyrA	MT0006	-	DNA gyrase subunit A
7	 68.20	0	9914..10828	+	304	15839379	-	MT0007	-	hypothetical protein
8	 62.32	0	11555..11692	-	45	15839380	-	MT0009	-	hypothetical protein
9	 71.00	+1	11874..12311	-	145	15839381	-	MT0010	-	hypothetical protein
10	 62.48	0	12468..13016	+	182	15839382	ppi-1	MT0011	-	peptidyl-prolyl cis-trans isomerase
11	 67.32	0	13024..13176	-	50	15839383	-	MT0012	-	hypothetical protein
12	 62.44	0	13133..13558	-	141	15839384	-	MT0013	-	hypothetical protein
13	 56.38	-2	13714..13995	-	93	15839385	-	MT0014	-	putative septation inhibitor protein
14	 64.89	0	14089..14877	+	262	15839386	-	MT0015	-	hypothetical protein
15	 63.95	0	14914..15612	+	232	15839387	-	MT0016	-	para-aminobenzoate synthase component II
16	 63.26	0	15590..17470	-	626	15839388	-	MT0017	-	serine/threonine protein kinase
17	 67.67	0	17467..18762	-	431	15839389	-	MT0018	-	serine/threonine protein kinase
18	 64.50	0	18759..20234	-	491	15839390	-	MT0019	-	penicillin-binding protein, putative
19	 62.13	0	20231..21640	-	469	15839391	ftsW-1	MT0020	-	cell division protein FtsW
20	 67.38	0	21637..23172	-	511	15839392	-	MT0021	-	hypothetical protein
21	 63.03	0	23270..23737	-	155	15839393	-	MT0022	-	hypothetical protein
22	 66.35	0	23861..25426	-	521	15839394	-	MT0023	-	hypothetical protein
23	 66.05	0	25895..26863	-	322	15839395	-	MT0024	-	2-nitropropane dioxygenase
24	 67.96	0	26975..27283	+	102	15839396	-	MT0025	-	hypothetical protein
25	 67.32	0	27577..28347	+	256	15839397	-	MT0026	-	DNA-binding protein, putative
26	 69.03	+1	28344..29189	+	281	15839398	-	MT0027	-	NLP/P60 family protein
27	 64.84	0	29227..29499	+	90	15839399	-	MT0028	-	hypothetical protein
28	 65.03	0	29703..31049	+	448	15839400	-	MT0029	-	hypothetical protein
29	 62.89	0	31170..31487	+	105	15839401	-	MT0030	-	hypothetical protein
30	 64.04	0	31573..31800	+	75	15839402	-	MT0030.1	-	hypothetical protein
31	 62.50	0	31805..31948	-	47	15839403	-	MT0031	-	hypothetical protein
32	 64.59	0	32031..32609	-	192	15839404	-	MT0032	-	hypothetical protein
33	 67.11	0	32646..33098	+	150	15839405	-	MT0033	-	hypothetical protein
34	 65.45	0	33168..33497	+	109	15839406	-	MT0034	-	hypothetical protein
35	 66.67	0	33526..33738	+	70	15839407	-	MT0035	-	hypothetical protein
36	 60.85	-1	33844..34101	-	85	15839408	-	MT0036	-	hypothetical protein
37	 62.05	0	34239..36554	+	771	15839409	-	MT0037	-	aminotransferase, class II
38	 56.82	-2	36551..36814	+	87	15839410	acp-1	MT0038	-	acyl carrier protein
39	 65.66	0	36811..37206	+	131	15839411	-	MT0039	-	hypothetical protein
40	 63.59	0	37203..38891	+	562	15839412	-	MT0040	-	AMP-binding family protein
41	 68.73	+1	39000..39773	-	257	15839413	-	MT0041	-	hypothetical protein
42	 67.82	0	39821..41122	-	433	15839414	-	MT0042	-	hypothetical protein
43	 65.35	0	41248..41856	+	202	15839415	-	MT0043	-	hypothetical protein
44	 71.84	+1	41948..42295	-	115	15839416	-	MT0044	-	hypothetical protein
45	 67.52	0	42377..43309	-	310	15839417	mtc28	MT0046	-	proline rich 28 kDa antigen
46	 62.96	0	43506..46415	+	969	15839418	leuS	MT0047	-	leucyl-tRNA synthetase
47	 63.80	0	46525..47151	-	208	15839419	-	MT0048	-	MarR family transcriptional regulator
48	 63.67	0	47310..48044	-	244	15839420	-	MT0049	-	GntR family transcriptional regulator
49	 66.54	0	48177..48971	-	264	15839421	-	MT0050	-	hypothetical protein
50	 67.11	0	48987..49883	-	298	15839422	-	MT0051	-	hypothetical protein
51	 64.04	0	49965..51068	-	367	15839423	-	MT0052	-	1L-myo-inositol-1-phosphate synthase
52	 66.48	0	51129..51671	-	180	15839424	-	MT0053	-	hypothetical protein
53	 65.98	0	51772..52641	-	289	15839425	-	MT0054	-	hypothetical protein
54	 66.67	0	52775..53188	+	137	15839426	-	MT0055	-	hypothetical protein
55	 65.16	0	53181..55643	+	820	15839427	ponA	MT0056	-	penicillin-binding protein
56	 64.59	0	55685..57322	+	545	15839428	-	MT0057	-	hypothetical protein
57	 65.88	0	57279..57917	+	212	15839429	-	MT0058	-	hypothetical protein
58	 60.14	-1	58136..58426	+	96	15839430	rpsF	MT0059	-	30S ribosomal protein S6
59	 66.67	0	58530..59024	+	164	15839431	ssb	MT0060	-	single-strand DNA-binding protein
60	 64.71	0	59066..59320	+	84	15839432	rpsR	MT0061	-	30S ribosomal protein S18
61	 62.09	0	59353..59811	+	152	15839433	rplI	MT0062	-	50S ribosomal protein L9
62	 60.73	-1	59840..60361	+	173	15839434	-	MT0063	-	hypothetical protein
63	 62.82	0	60340..62964	+	874	15839435	dnaB	MT0064	-	replicative DNA helicase
64	 61.90	0	63144..63836	+	230	15839436	-	MT0065	-	hypothetical protein
65	 60.06	-1	63853..64911	+	352	15839437	-	MT0066	-	hypothetical protein
66	 60.89	-1	64956..65336	-	126	15839438	-	MT0066.1	-	hypothetical protein
67	 64.32	0	65344..65556	-	70	15839439	-	MT0066.2	-	hypothetical protein
68	 68.24	0	65496..66638	+	380	15839440	celA	MT0067	-	cellulase
69	 67.22	0	66867..68306	+	479	15839441	mitR	MT0068	-	mitR protein
70	 66.67	0	68362..68523	+	53	15839442	-	MT0069	-	hypothetical protein
71	 63.57	0	68564..71503	+	979	15839443	-	MT0070	-	hypothetical protein
72	 62.44	0	71802..72203	+	133	15839444	-	MT0071	-	hypothetical protein
73	 61.80	0	72255..74492	-	745	15839445	icd-1	MT0072	-	isocitrate dehydrogenase, NADP-dependent, monomeric type
74	 65.09	0	74610..75179	-	189	15839446	-	MT0073	-	TetR family transcriptional regulator
75	 65.79	0	75282..76193	+	303	15839447	-	MT0074	-	short chain dehydrogenase
76	 65.08	0	76218..77603	-	461	15839448	sdaA	MT0075	-	L-serine dehydratase
77	 66.12	0	77600..78877	-	425	15839449	glyA-1	MT0076	-	serine hydroxymethyltransferase
78	 64.85	0	79467..80183	+	238	15839450	-	MT0077	-	hypothetical protein
79	 61.71	-1	80614..81663	+	349	15839451	-	MT0078	-	hypothetical protein
80	 62.64	0	81666..82658	+	330	15839452	-	MT0079	-	ABC transporter, ATP-binding protein
81	 66.10	0	82738..83973	+	411	15839453	-	MT0080	-	hypothetical protein
82	 64.11	0	83986..85158	+	390	15839454	-	MT0081	-	aminotransferase, class I
83	 62.31	0	85173..85562	-	129	15839455	-	MT0082	-	hypothetical protein
84	 65.96	0	85626..86480	-	284	15839456	-	MT0083	-	alpha/beta fold family hydrolase
85	 67.99	0	86518..87123	+	201	15839457	-	MT0084	-	TetR family transcriptional regulator
86	 61.11	-1	87198..87791	-	197	15839458	-	MT0085	-	hypothetical protein
87	 61.50	-1	87788..88000	-	70	15839459	-	MT0085.1	-	hypothetical protein
88	 68.13	0	88194..89015	+	273	15839460	-	MT0086	-	hypothetical protein
89	 67.63	0	89057..89470	+	137	15839461	-	MT0087	-	hypothetical protein
90	 65.51	0	89565..89909	+	114	15839462	-	MT0088	-	ArsR family transcriptional regulator
91	 69.79	+1	89914..90393	+	159	15839463	-	MT0089	-	NADH-ubiquinone oxidoreductase, 20 Kd subunit
92	 71.24	+1	90390..92312	+	640	15839464	-	MT0090	-	NADH-ubiquinone oxidoreductase, putative
93	 68.56	0	92318..93268	+	316	15839465	hycD	MT0091	-	formate hydrogenlyase, subunit 4
94	 68.93	+1	93279..93941	+	220	15839466	hyfE	MT0092	-	hydrogenase-4 component E
95	 68.92	+1	93941..95407	+	488	15839467	-	MT0093	-	NADH-ubiquinone oxidoreductase, putative
96	 61.63	-1	96917..97591	+	224	15839468	-	MT0096	-	hypothetical protein
97	 67.00	0	97748..98341	+	197	15839469	-	MT0098	-	methyltransferase, putative
98	 65.63	0	98470..99240	+	256	15839470	-	MT0099	-	hypothetical protein
99	 68.55	0	99259..99630	+	123	15839471	-	MT0099.1	-	hypothetical protein
100	 65.10	0	99674..100441	+	255	15839472	-	MT0100	-	5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, putative
65.22	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.