IslandPath Analysis: Burkholderia phymatum STM815



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.69   STD DEV: 3.82
Burkholderia phymatum STM815 chromosome 2, complete sequence - 1..2697374
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 67.17	+1	28..624	-	198	186471974	-	Bphy_3102	-	putative lipoprotein
2	 62.52	0	737..1435	-	232	186471975	-	Bphy_3103	-	hypothetical protein
3	 67.19	+1	1620..2570	+	316	186471976	-	Bphy_3104	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
4	 68.69	+1	2614..3207	-	197	186471977	-	Bphy_3105	-	hypothetical protein
5	 61.99	0	3387..3707	+	106	186471978	-	Bphy_3106	-	hypothetical protein
6	 73.52	+2	3747..3965	+	72	186471979	-	Bphy_3107	-	FmdB family regulatory protein
7	 67.09	+1	4050..4988	+	312	186471980	-	Bphy_3108	-	LysR family transcriptional regulator
8	 67.87	+1	5093..6337	+	414	186471981	-	Bphy_3109	-	major facilitator transporter
9	 65.04	0	6443..7117	-	224	186471982	-	Bphy_3110	-	two component transcriptional regulator
10	 64.94	0	7319..8647	-	442	186471983	-	Bphy_3111	-	integral membrane sensor signal transduction histidine kinase
11	 67.64	+1	8881..9189	-	102	186471984	-	Bphy_3112	-	hypothetical protein
12	 59.84	0	9287..9535	+	82	186471985	-	Bphy_3113	-	hypothetical protein
13	 63.44	0	9590..9775	+	61	186471986	-	Bphy_3114	-	hypothetical protein
14	 65.79	0	9835..10290	+	151	186471987	-	Bphy_3115	-	hypothetical protein
15	 66.46	0	10511..11461	+	316	186471988	-	Bphy_3116	-	taurine dioxygenase
16	 65.87	0	11487..12611	-	374	186471989	-	Bphy_3117	-	heat shock protein DnaJ domain-containing protein
17	 62.66	0	12787..13785	-	332	186471990	-	Bphy_3118	-	hypothetical protein
18	 59.62	0	14272..14484	-	70	186471991	-	Bphy_3119	-	hypothetical protein
19	 63.95	0	14658..15689	-	343	186471992	-	Bphy_3120	-	phosphate ABC transporter, periplasmic phosphate-binding protein
20	 68.28	+1	15886..17373	-	495	186471993	-	Bphy_3121	-	transcriptional regulator
21	 64.62	0	17578..17919	+	113	186471994	-	Bphy_3122	-	hypothetical protein
22	 65.37	0	17953..19107	-	384	186471995	-	Bphy_3123	-	DNA-directed DNA polymerase
23	 64.05	0	19271..19576	-	101	186471996	-	Bphy_3124	-	hypothetical protein
24	 65.75	0	19573..19791	-	72	186471997	-	Bphy_3125	-	hypothetical protein
25	 63.12	0	20007..21191	-	394	186471998	-	Bphy_3126	-	porin
26	 64.86	0	21259..23700	-	813	186471999	-	Bphy_3127	-	glycoside hydrolase family protein
27	 65.21	0	23724..25031	-	435	186472000	-	Bphy_3128	-	major facilitator transporter
28	 51.79	-2	25068..25403	+	111	186472001	-	Bphy_3129	-	hypothetical protein
29	 63.74	0	25871..26041	-	56	186472002	-	Bphy_3130	-	hypothetical protein
30	 64.82	0	26362..27120	+	252	186472003	-	Bphy_3131	-	putative glutathione S-transferase
31	 65.88	0	27262..27900	+	212	186472004	-	Bphy_3132	-	lysine exporter protein LysE/YggA
32	 66.98	+1	27908..28852	-	314	186472005	-	Bphy_3133	-	hypothetical protein
33	 67.57	+1	28957..31275	-	772	186472006	-	Bphy_3134	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
34	 63.67	0	31367..32200	-	277	186472007	-	Bphy_3135	-	hypothetical protein
35	 60.12	0	32261..32932	-	223	186472008	-	Bphy_3136	-	multiple antibiotic resistance (MarC)-related protein
36	 61.50	0	33246..33458	+	70	186472009	-	Bphy_3137	-	hypothetical protein
37	 61.66	0	33455..34933	+	492	186472010	-	Bphy_3138	-	Na+/solute symporter
38	 62.98	0	35056..35787	-	243	186472011	-	Bphy_3139	-	precorrin-4 C11-methyltransferase
39	 66.53	+1	35784..36521	-	245	186472012	-	Bphy_3140	-	precorrin-6x reductase
40	 66.30	0	36518..37618	-	366	186472013	-	Bphy_3141	-	cobalamin biosynthesis protein CbiD
41	 69.98	+1	37618..38823	-	401	186472014	-	Bphy_3142	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
42	 66.67	+1	39178..40575	+	465	186472015	-	Bphy_3143	-	precorrin-3B synthase
43	 68.70	+1	40556..41194	+	212	186472016	-	Bphy_3144	-	precorrin-8X methylmutase
44	 64.81	0	41195..41950	+	251	186472017	-	Bphy_3145	-	precorrin-2 C20-methyltransferase
45	 68.70	+1	41947..43665	+	572	186472018	-	Bphy_3146	-	precorrin-3B C17-methyltransferase
46	 65.51	0	43826..44779	+	317	186472019	-	Bphy_3147	-	type IV pilus assembly PilZ
47	 66.58	+1	44904..46019	-	371	186472020	-	Bphy_3148	-	OmpA/MotB domain-containing protein
48	 63.33	0	46071..54677	-	2868	186472021	-	Bphy_3149	-	hemagluttinin domain-containing protein
49	 62.50	0	55130..55777	-	215	186472022	-	Bphy_3150	-	magnesium chelatase subunit ChlD
50	 63.27	0	55807..56835	-	342	186472023	-	Bphy_3151	-	magnesium chelatase
51	 64.85	0	56832..60635	-	1267	186472024	-	Bphy_3152	-	cobaltochelatase, CobN subunit
52	 63.33	0	60646..61755	-	369	186472025	-	Bphy_3153	-	cobalamin biosynthesis protein CobW
53	 68.15	+1	62775..63518	+	247	186472026	-	Bphy_3154	-	uroporphyrin-III C-methyltransferase
54	 66.67	+1	63515..63949	+	144	186472027	-	Bphy_3155	-	cobalamin (vitamin B12) biosynthesis CbiG protein
55	 63.02	0	63946..64548	+	200	186472028	-	Bphy_3156	-	cob(I)alamin adenosyltransferase
56	 68.20	+1	64552..65856	+	434	186472029	-	Bphy_3157	-	glutamine amidotransferase
57	 66.67	+1	65840..66535	+	231	186472030	-	Bphy_3158	-	cob(II)yrinic acid a,c-diamide reductase
58	 64.05	0	66565..67251	-	228	186472031	-	Bphy_3159	-	two component transcriptional regulator
59	 63.86	0	68114..69004	-	296	186472032	-	Bphy_3160	-	DeoR family transcriptional regulator
60	 64.73	0	69118..71601	+	827	186472033	-	Bphy_3161	-	FAD dependent oxidoreductase
61	 68.30	+1	71625..72482	-	285	186472034	-	Bphy_3162	-	AraC family transcriptional regulator
62	 65.65	0	72675..73556	+	293	186472035	-	Bphy_3163	-	NmrA family protein
63	 64.78	0	74700..75017	-	105	186472036	-	Bphy_3165	-	transposase IS3/IS911 family protein
64	 55.43	-1	75755..76021	-	88	186472037	-	Bphy_3167	-	hypothetical protein
65	 58.94	0	76349..77254	-	301	186472038	-	Bphy_3168	-	LysR family transcriptional regulator
66	 58.83	-1	79549..80556	-	335	186472039	-	Bphy_3172	-	quinone oxidoreductase
67	 55.92	-1	80895..81908	+	337	186472040	-	Bphy_3173	-	adenosine deaminase
68	 57.83	-1	81901..83100	+	399	186472041	-	Bphy_3174	-	L-lactate dehydrogenase (cytochrome)
69	 55.25	-1	83465..84568	+	367	186472042	-	Bphy_3175	-	NMT1/THI5-like domain-containing protein
70	 55.74	-1	84670..85584	+	304	186472043	-	Bphy_3176	-	LysR family transcriptional regulator
71	 59.48	0	87447..89603	+	718	186472044	-	Bphy_3178	-	CoA-binding domain-containing protein
72	 57.13	-1	89600..90427	+	275	186472045	-	Bphy_3179	-	enoyl-CoA hydratase/isomerase
73	 57.39	-1	90473..91237	+	254	186472046	-	Bphy_3180	-	ABC transporter related
74	 54.32	-2	91237..92070	+	277	186472047	-	Bphy_3181	-	binding-protein-dependent transport systems inner membrane component
75	 59.18	0	92112..92525	+	137	186472048	-	Bphy_3182	-	hypothetical protein
76	 57.98	-1	92538..93308	+	256	186472049	-	Bphy_3183	-	class II aldolase/adducin family protein
77	 60.53	0	93305..94315	+	336	186472050	-	Bphy_3184	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
78	 53.51	-2	94397..95422	+	341	186472051	-	Bphy_3185	-	adenosine deaminase
79	 55.61	-1	95489..96628	-	379	186472052	-	Bphy_3186	-	porin
80	 58.23	-1	96892..97815	-	307	186472053	-	Bphy_3187	-	LysR family transcriptional regulator
81	 58.99	0	98076..99416	+	446	186472054	-	Bphy_3188	-	xenobiotic compound monooxygenase A subunit
82	 56.84	-1	99416..99934	+	172	186472055	-	Bphy_3189	-	flavin reductase domain-containing protein
83	 56.52	-1	100032..100238	+	68	186472056	-	Bphy_3190	-	hypothetical protein
84	 56.69	-1	100235..101707	+	490	186472057	-	Bphy_3191	-	Na+/solute symporter
85	 58.24	-1	103536..104627	+	363	186472058	-	Bphy_3194	-	ISRSO5-transposase protein
86	 54.19	-2	104657..105730	-	357	186472059	-	Bphy_3195	-	methyl-accepting chemotaxis sensory transducer
87	 53.78	-2	105992..107077	-	361	186472060	-	Bphy_3196	-	outer membrane protein (porin)
88	 56.14	-1	107221..108864	-	547	186472061	-	Bphy_3197	-	glucose-methanol-choline oxidoreductase
89	 56.85	-1	108869..110365	-	498	186472062	-	Bphy_3198	-	aldehyde dehydrogenase
90	 54.85	-2	110411..111595	-	394	186472063	-	Bphy_3199	-	membrane protein involved in aromatic hydrocarbon degradation
91	 55.76	-1	111656..112618	-	320	186472064	-	Bphy_3200	-	ferredoxin
92	 58.73	-1	112803..114113	-	436	186472065	-	Bphy_3201	-	phthalate 4,5-dioxygenase
93	 56.59	-1	114317..115318	+	333	186472066	-	Bphy_3202	-	LysR family transcriptional regulator
94	 55.06	-1	115395..116342	-	315	186472067	-	Bphy_3203	-	oxidoreductase domain-containing protein
95	 56.82	-1	116339..117181	-	280	186472068	-	Bphy_3204	-	protocatechuate 4,5-dioxygenase
96	 54.17	-2	117174..117581	-	135	186472069	-	Bphy_3205	-	protocatechuate 4,5-dioxygenase, alpha subunit
97	 57.87	-1	117581..118489	-	302	186472070	-	Bphy_3206	-	amidohydrolase 2
98	 59.01	0	118564..119268	-	234	186472071	-	Bphy_3207	-	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
99	 53.26	-2	119273..120301	-	342	186472072	-	Bphy_3208	-	amidohydrolase 2
100	 59.28	0	120298..121407	-	369	186472073	-	Bphy_3209	-	hypothetical protein
62.69	MEAN

3.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.