IslandPath Analysis: Coprothermobacter proteolyticus DSM 5265



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.58   STD DEV: 2.77
Coprothermobacter proteolyticus DSM 5265, complete genome - 1..1424912
1482 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.79	+1	7..774	+	255	206895191	-	COPRO5265_0001	-	nitrilase 2, putative
2	 40.54	-1	964..1782	+	272	206896538	-	COPRO5265_0002	-	caax amino protease family
3	 47.64	+1	1867..2502	+	211	206895125	-	COPRO5265_0003	-	SAM-dependent methyltransferase, UbiE/COQ5 family
4	 42.71	0	2592..3380	+	262	206896061	thiD	COPRO5265_0004	-	phosphomethylpyrimidine kinase
5	 46.62	0	3409..4221	+	270	206895113	thiM	COPRO5265_0005	-	hydroxyethylthiazole kinase
6	 44.81	0	4226..4861	+	211	206895739	thiE	COPRO5265_0006	-	thiamine-phosphate pyrophosphorylase
7	 43.76	0	4975..7065	+	696	206896391	nrdD	COPRO5265_0007	-	anaerobic ribonucleoside-triphosphate reductase
8	 40.55	-1	7083..7775	+	230	206895496	-	COPRO5265_0008	-	anaerobic ribonucleoside-triphosphate reductase activating protein
9	 46.75	0	7976..8728	+	250	206896121	-	COPRO5265_0009	-	ABC transporter ATP-binding protein
10	 43.14	0	8688..10400	+	570	206895327	-	COPRO5265_0010	-	hypothetical protein
11	 42.75	0	10428..10565	-	45	206896007	-	COPRO5265_0011	-	hypothetical protein
12	 45.24	0	10683..11270	+	195	206895106	-	COPRO5265_0012	-	vitamin B12 dependent methionine synthase, activation domain protein
13	 46.13	0	11267..13594	+	775	206895509	-	COPRO5265_0013	-	5-methyltetrahydrofolate S-homocysteine methyltransferase
14	 45.11	0	13591..14940	+	449	206895847	-	COPRO5265_0015	-	aspartate kinase
15	 47.81	+1	14915..15142	-	75	206895373	-	COPRO5265_0014	-	hypothetical protein
16	 45.27	0	14937..16268	+	443	206895204	-	COPRO5265_0016	-	inosine-5'-monophosphate dehydrogenase related protein viii
17	 47.14	0	16255..17007	+	250	206896015	-	COPRO5265_0017	-	hypothetical protein
18	 44.62	0	16994..17950	+	318	206895362	-	COPRO5265_0018	-	5,10-methylenetetrahydrofolate reductase
19	 48.31	+1	17980..19014	+	344	206895542	asd	COPRO5265_0019	-	aspartate-semialdehyde dehydrogenase
20	 41.43	-1	19186..19395	+	69	206896499	-	COPRO5265_0020	-	hypothetical protein
21	 43.15	0	19383..19922	+	179	206895670	-	COPRO5265_0021	-	RNA polymerase sigma-E factor, putative
22	 41.99	0	19906..20667	+	253	206895088	-	COPRO5265_0023	-	hypothetical protein
23	 38.64	-2	20289..20420	-	43	206895942	-	COPRO5265_0022	-	hypothetical protein
24	 45.40	0	20667..21536	+	289	206895080	-	COPRO5265_0024	-	ABC transporter, ATP-binding protein
25	 40.63	-1	21533..22711	+	392	206895881	-	COPRO5265_0025	-	hypothetical protein
26	 39.90	-1	22708..23544	+	278	206895172	-	COPRO5265_0026	-	hypothetical protein
27	 46.80	0	23671..24123	+	150	206895658	ptsN	COPRO5265_0027	-	PtsN protein
28	 44.68	0	24140..25417	+	425	206896490	-	COPRO5265_0028	-	putative sugar-specific permease, SgaT/UlaA superfamily
29	 41.00	-1	25440..25739	+	99	206896341	sgaB1	COPRO5265_0029	-	pentitol phosphotransferase enzyme II, B component
30	 42.33	0	26217..28316	+	699	206895448	-	COPRO5265_0030	-	PAS/PAC sensor signal transduction histidine kinase
31	 42.06	0	28328..28774	+	148	206896405	-	COPRO5265_0031	-	response regulator
32	 44.05	0	28775..30136	+	453	206895579	-	COPRO5265_0032	-	sensory box protein
33	 51.85	+2	30290..30397	-	35	206895234	-	COPRO5265_0033	-	hypothetical protein
34	 47.61	+1	30731..31921	+	396	206896272	trpB	COPRO5265_0034	-	tryptophan synthase, beta subunit
35	 44.36	0	31947..32771	+	274	206895910	trpA	COPRO5265_0035	-	tryptophan synthase, alpha subunit
36	 45.95	0	32878..33495	+	205	206895272	-	COPRO5265_0036	-	dithiol-disulfide isomerase
37	 40.07	-1	33594..34484	-	296	206896053	-	COPRO5265_0037	-	putative phosphotriesterase
38	 46.84	0	34496..35776	-	426	206895395	-	COPRO5265_0038	-	hypothetical protein
39	 36.61	-2	35837..36325	+	162	206895385	-	COPRO5265_0039	-	hypothetical protein
40	 38.89	-2	36326..36595	+	89	206895489	-	COPRO5265_0040	-	hypothetical protein
41	 46.71	0	36885..37751	+	288	206896382	-	COPRO5265_0041	-	tyrosine recombinase XerD
42	 50.08	+1	37765..38361	+	198	206895638	-	COPRO5265_0042	-	hypothetical protein
43	 45.17	0	38401..38949	+	182	206895806	-	COPRO5265_0043	-	hypothetical protein
44	 48.67	+1	39043..39192	+	49	206896316	-	COPRO5265_0044	-	hypothetical protein
45	 36.82	-2	39589..40935	+	448	206895275	-	COPRO5265_0045	-	chitin synthase
46	 33.33	-2	41206..41310	-	34	206895547	-	COPRO5265_0046	-	hypothetical protein
47	 48.58	+1	41493..42797	+	434	206896367	-	COPRO5265_0047	-	RmuC domain protein
48	 41.30	-1	42800..42937	+	45	206895717	-	COPRO5265_0048	-	hypothetical protein
49	 50.11	+1	43210..44091	+	293	206895719	-	COPRO5265_0049	-	prophage LambdaCh01, nuclease domain protein
50	 45.96	0	44218..45033	+	271	206896531	-	COPRO5265_0050	-	ymh, putative
51	 52.38	+2	45168..45797	+	209	206895207	-	COPRO5265_0051	-	N-6 DNA methylase
52	 46.46	0	45822..46712	+	296	206896042	fimA	COPRO5265_0052	-	major pilin protein FimA
53	 42.82	0	46922..47743	+	273	206896055	-	COPRO5265_0053	-	oxidoreductase
54	 48.07	+1	47961..48530	+	189	206895490	-	COPRO5265_0054	-	serine acetyltransferase (SAT)
55	 47.01	0	48527..49396	+	289	206895845	-	COPRO5265_0055	-	cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (Superoxide-inducible protein 11)(SOI11)
56	 45.01	0	49711..50361	+	216	206895244	-	COPRO5265_0056	-	redoxin superfamily
57	 44.95	0	50337..52427	+	696	206896426	pcrA	COPRO5265_0057	-	ATP-dependent DNA helicase PcrA
58	 47.08	0	52620..52910	-	96	206895798	-	COPRO5265_0058	-	molybdopterin converting factor subunit 1
59	 48.83	+1	52897..54741	-	614	206895812	-	COPRO5265_0059	-	tungsten-containing aldehyde ferredoxin oxidoreductase
60	 46.58	0	54914..56242	-	442	206896259	-	COPRO5265_0060	-	TldD/PmbA family protein, putative
61	 48.51	+1	56242..57651	-	469	206896049	-	COPRO5265_0061	-	LmbIH
62	 42.83	0	57624..59255	+	543	206895387	dnaA	COPRO5265_0062	-	chromosomal replication initiator protein DnaA
63	 39.13	-1	59304..59441	-	45	206896438	-	COPRO5265_0063	-	hypothetical protein
64	 45.62	0	59535..60299	-	254	206895305	-	COPRO5265_0064	-	ZIP zinc transporter family protein
65	 40.20	-1	60358..60459	-	33	206895907	-	COPRO5265_0065	-	hypothetical protein
66	 45.58	0	60595..61680	+	361	206895201	dnaN	COPRO5265_0066	-	DNA polymerase III, beta subunit
67	 42.74	0	61681..61914	+	77	206896094	-	COPRO5265_0067	-	hypothetical protein
68	 48.19	+1	62194..63627	+	477	206895447	norM	COPRO5265_0068	-	Na+-driven multidrug efflux pump
69	 45.72	0	63754..65376	+	540	206896229	-	COPRO5265_0069	-	maltose ABC transporter, periplasmic maltose-binding protein
70	 44.95	0	65513..66433	+	306	206896093	-	COPRO5265_0070	-	maltose transport system permease protein MalF
71	 44.14	0	66440..67309	+	289	206896408	malG	COPRO5265_0071	-	ABC-type Maltose/ Maltodextrin permease
72	 50.48	+2	67377..67481	+	34	206895754	-	COPRO5265_0072	-	hypothetical protein
73	 48.83	+1	67462..72345	+	1627	206895652	-	COPRO5265_0073	-	amylopullulanase (Alpha-amylase/pullulanase)
74	 50.18	+2	72454..73266	-	270	206895112	-	COPRO5265_0074	-	nucleotide-binding protein
75	 45.77	0	73362..74567	+	401	206896449	-	COPRO5265_0075	-	anion ABC transporter, anion-binding protein
76	 45.78	0	74798..75544	+	248	206896273	-	COPRO5265_0076	-	anion ABC transporter, anion-binding protein
77	 48.03	+1	75584..76216	+	210	206896151	-	COPRO5265_0077	-	permease component of tungstate ABC transporter
78	 48.98	+1	76203..76790	+	195	206895595	-	COPRO5265_0078	-	phosphate import ATP-binding protein PstB 2 (Phosphate-transporting ATPase 2) (ABC phosphate transporter 2)
79	 46.67	0	76883..77782	+	299	206896461	-	COPRO5265_0079	-	copper amine oxidase N- domain family
80	 45.43	0	78005..83560	+	1851	206895251	-	COPRO5265_0081	-	protease
81	 49.02	+1	79705..79857	-	50	206895936	-	COPRO5265_0080	-	hypothetical protein
82	 48.38	+1	83962..86745	+	927	206896427	-	COPRO5265_0082	-	copper amine oxidase N- domain family
83	 55.38	+2	86871..87242	+	123	206895779	-	COPRO5265_0083	-	hypothetical protein
84	 51.02	+2	87611..88933	+	440	206896051	-	COPRO5265_0085	-	xanthine/uracil permease family
85	 50.00	+1	89160..89381	+	73	206895208	-	COPRO5265_0086	-	hypothetical protein
86	 49.52	+1	89619..90668	+	349	206895836	-	COPRO5265_0087	-	hypothetical protein
87	 48.56	+1	90613..91860	+	415	206895171	-	COPRO5265_0088	-	hypothetical protein
88	 47.17	0	92033..94027	+	664	206896030	-	COPRO5265_0089	-	methyl-accepting chemotaxis protein
89	 46.48	0	94560..95213	+	217	206895432	-	COPRO5265_0090	-	L-ribulose 5-phosphate 4-epimerase
90	 45.54	0	95273..96820	+	515	206895589	-	COPRO5265_0091	-	oligopeptide ABC transporter (binding protein), putative
91	 42.65	0	96841..97248	+	135	206896417	-	COPRO5265_0092	-	hypothetical protein
92	 49.55	+1	97298..97741	+	147	206895872	-	COPRO5265_0093	-	hypothetical protein
93	 49.23	+1	97774..98685	-	303	206895270	-	COPRO5265_0094	-	hypothetical protein
94	 46.32	0	98657..99472	-	271	206896482	-	COPRO5265_0095	-	hypothetical protein
95	 46.09	0	99478..99861	-	127	206895649	-	COPRO5265_0096	-	6-pyruvoyl-tetrahydropterin synthase
96	 46.67	0	99915..100169	-	84	206895824	-	COPRO5265_0097	-	hypothetical protein
97	 47.17	0	100177..100617	-	146	206896318	-	COPRO5265_0098	-	DNA-directed RNA polymerase ECF-type sigma factor
98	 48.06	+1	100614..101693	-	359	206895493	-	COPRO5265_0099	-	hypothetical protein
99	 41.46	-1	101675..101797	+	40	206895874	-	COPRO5265_0101	-	hypothetical protein
100	 47.30	0	101747..102283	-	178	206896108	pspC	COPRO5265_0100	-	putative stress-responsive transcriptional regulator
44.58	MEAN

2.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.