IslandPath Analysis: Anaplasma phagocytophilum HZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.22   STD DEV: 3.33
Anaplasma phagocytophilum HZ, complete genome - 1..1471282
1264 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.36	0	122..2683	+	853	88607943	polA	APH_0001	-	DNA polymerase I
2	 42.33	0	2838..3548	+	236	88607073	rpe	APH_0002	-	ribulose-phosphate 3-epimerase
3	 44.63	0	3624..4358	+	244	88607911	-	APH_0003	-	putative ABC transporter, permease protein
4	 41.18	0	4365..5090	+	241	88607015	-	APH_0004	-	ABC transporter, ATP-binding protein
5	 38.46	-1	6151..7008	+	285	88607386	-	APH_0005	-	hypothetical protein
6	 39.94	0	7046..7711	+	221	88606844	-	APH_0006	-	isoprenoid biosynthesis protein
7	 41.14	0	7895..9073	-	392	88607550	metK	APH_0007	-	S-adenosylmethionine synthetase
8	 35.37	-2	9321..10499	+	392	88606947	-	APH_0009	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
9	 37.14	-1	11313..11417	+	34	88607115	-	APH_0010	-	hypothetical protein
10	 34.13	-2	11486..12109	-	207	88607501	-	APH_0011	-	hypothetical protein
11	 41.78	0	12403..13254	+	283	88607262	glyQ	APH_0013	-	glycyl-tRNA synthetase subunit alpha
12	 38.08	-1	13256..15361	+	701	88606787	glyS	APH_0014	-	glycyl-tRNA synthetase, beta subunit
13	 41.86	0	15439..16587	+	382	88606746	dnaJ	APH_0015	-	chaperone protein DnaJ
14	 38.41	-1	16610..17437	-	275	88607335	nadC	APH_0016	-	nicotinate-nucleotide pyrophosphorylase
15	 35.92	-1	17529..18107	+	192	88607750	-	APH_0017	-	hypothetical protein
16	 39.84	0	18109..18600	-	163	88607636	ruvC	APH_0018	-	crossover junction endodeoxyribonuclease RuvC
17	 39.63	0	18605..19462	-	285	88607040	-	APH_0019	-	cytochrome c oxidase, subunit III
18	 38.95	0	19525..20556	-	343	88607724	hemE	APH_0020	-	uroporphyrinogen decarboxylase
19	 38.85	-1	20942..21811	+	289	88607215	-	APH_0021	-	putative hemolysin
20	 37.37	-1	21852..22322	-	156	88607432	-	APH_0022	-	HK97 family phage prohead protease
21	 40.03	0	22352..23530	-	392	161486833	-	APH_0023	-	HK97 family phage portal protein
22	 35.66	-1	23527..23655	-	42	88607364	-	APH_0024	-	hypothetical protein
23	 37.68	-1	23719..24477	+	252	88607173	-	APH_0025	-	putative biotin synthesis protein BioC
24	 41.41	0	24534..25499	+	321	88607747	nadA	APH_0026	-	quinolinate synthetase
25	 40.94	0	25534..25914	-	126	88606918	fdxA	APH_0027	-	ferredoxin
26	 37.81	-1	25886..26086	+	66	88607776	-	APH_0028	-	hypothetical protein
27	 37.61	-1	28385..28501	+	38	88607481	-	APH_0031	-	hypothetical protein
28	 41.67	0	28789..30648	-	619	88607403	-	APH_0032	-	hypothetical protein
29	 35.74	-1	30808..31098	-	96	88606808	-	APH_0033	-	hypothetical protein
30	 44.48	0	31639..32634	-	331	88607522	trpS	APH_0035	-	tryptophanyl-tRNA synthetase
31	 44.18	0	32641..33276	-	211	88607566	grpE	APH_0036	-	co-chaperone GrpE
32	 43.93	0	33356..34450	+	364	88607630	ribD	APH_0037	-	riboflavin biosynthesis protein RibD
33	 44.59	0	34514..36139	-	541	88607103	pyrG	APH_0038	-	CTP synthetase
34	 49.07	+2	36152..36475	-	107	88607260	secG	APH_0039	-	preprotein translocase subunit SecG
35	 41.88	0	36738..37673	+	311	88607245	xerD	APH_0040	-	tyrosine recombinase XerD
36	 42.04	0	38037..38714	-	225	88607870	-	APH_0041	-	ABC transporter, ATP-binding protein
37	 44.81	0	39100..41355	+	751	88607511	-	APH_0042	-	malic enzyme
38	 43.38	0	41662..44388	+	908	88606722	-	APH_0043	-	hypothetical protein
39	 43.62	0	44756..46243	+	495	88607852	-	APH_0044	-	putative monovalent cation/H+ antiporter subunit D
40	 46.58	+1	47382..47834	-	150	88607489	-	APH_0045	-	mce-related protein
41	 45.42	0	48028..48333	-	101	88607516	-	APH_0046	-	hypothetical protein
42	 39.61	0	48447..48908	+	153	88606966	-	APH_0047	-	transcriptional regulator NrdR
43	 40.29	0	49150..55959	-	2269	88606817	-	APH_0049	-	hypothetical protein
44	 40.83	0	56495..60628	+	1377	88607541	-	APH_0050	-	hypothetical protein
45	 41.74	0	61001..62011	+	336	88607705	-	APH_0051	-	iron-binding protein
46	 42.59	0	62012..62227	+	71	88607123	-	APH_0052	-	hypothetical protein
47	 44.31	0	62305..63588	-	427	88607830	-	APH_0053	-	major facilitator family transporter
48	 48.45	+1	63916..64206	+	96	88606858	rpsP	APH_0054	-	30S ribosomal protein S16
49	 41.27	0	64713..64838	+	41	88607433	-	APH_0055	-	hypothetical protein
50	 38.96	0	64958..65668	-	236	88606715	-	APH_0056	-	short chain dehydrogenase/reductase family oxidoreductase
51	 40.00	0	65755..65949	+	64	88606852	-	APH_0057	-	hypothetical protein
52	 41.52	0	66297..67322	+	341	88607858	-	APH_0058	-	S-adenosylmethionine synthetase
53	 44.31	0	67898..68926	-	342	88607026	pheS	APH_0059	-	phenylalanyl-tRNA synthetase, alpha subunit
54	 47.03	+1	68907..69293	-	128	88606750	rplT	APH_0060	-	50S ribosomal protein L20
55	 48.26	+1	69317..69517	-	66	88607195	rpmI	APH_0061	-	50S ribosomal protein L35
56	 49.91	+2	69911..70477	+	188	88606901	-	APH_0062	-	hypothetical protein
57	 44.44	0	70474..70635	+	53	88607688	-	APH_0063	-	hypothetical protein
58	 44.37	0	70587..71945	+	452	88607694	rho	APH_0064	-	transcription termination factor Rho
59	 45.06	0	72028..73443	-	471	88606942	lpdA-1	APH_0065	-	dihydrolipoamide dehydrogenase
60	 45.10	0	73558..73914	-	118	88607533	-	APH_0066	-	DnaJ domain-containing protein
61	 42.15	0	74057..74623	+	188	88606830	-	APH_0067	-	NifU domain-containing protein
62	 39.07	0	75032..77053	-	673	88606778	-	APH_0068	-	hypothetical protein
63	 39.05	0	77229..77438	+	69	88607118	thiS	APH_0069	-	thiamine biosynthesis protein ThiS
64	 44.02	0	77472..78257	+	261	88607265	thiG	APH_0070	-	thiazole synthase
65	 42.93	0	78498..78914	-	138	88607257	-	APH_0071	-	hypothetical protein
66	 41.76	0	79102..80454	+	450	88607805	gltX	APH_0072	-	glutamyl-tRNA synthetase
67	 47.55	+1	80911..82092	+	393	88606731	-	APH_0074	-	hypothetical protein
68	 42.62	0	82103..82651	+	182	88607622	-	APH_0075	-	putative methyltransferase
69	 40.69	0	83993..84916	-	307	88607780	-	APH_0077	-	auxin efflux carrier family protein
70	 46.28	+1	85022..85330	-	102	88607239	-	APH_0078	-	putative oxidoreductase
71	 34.21	-2	85386..85613	+	75	88607825	xseB	APH_0079	-	exodeoxyribonuclease VII, small subunit
72	 45.05	0	86047..86379	-	110	88607814	trx	APH_0080	-	thioredoxin
73	 44.00	0	86392..87207	-	271	88607651	virB9-1	APH_0081	-	type IV secretion system protein VirB9
74	 46.24	+1	87566..88603	-	345	88607434	pdhA	APH_0082	-	pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit
75	 42.78	0	88626..89504	-	292	88607297	-	APH_0083	-	alpha/beta fold family hydrolase
76	 44.16	0	94007..94477	-	156	88606915	-	APH_0087	-	putative phosphoribosylglycinamide formyltransferase, truncation
77	 46.00	+1	94542..96002	-	486	88607628	guaB	APH_0088	-	inosine-5'-monophosphate dehydrogenase
78	 46.00	+1	96078..96890	-	270	88607693	ppnK	APH_0089	-	inorganic polyphosphate/ATP-NAD kinase
79	 42.79	0	96900..97121	-	73	88607161	rpmE	APH_0090	-	50S ribosomal protein L31
80	 39.19	0	97192..97806	+	204	88607899	-	APH_0091	-	hypothetical protein
81	 45.83	+1	97971..98930	+	319	88607175	fabD	APH_0092	-	malonyl CoA-acyl carrier protein transacylase
82	 42.42	0	98947..99606	+	219	88607927	tmk	APH_0093	-	thymidylate kinase
83	 42.69	0	99774..100949	+	391	88607674	-	APH_0094	-	hypothetical protein
84	 44.44	0	101121..101219	+	32	88607084	-	APH_0095	-	hypothetical protein
85	 41.87	0	101682..102407	-	241	88607695	-	APH_0096	-	Tim44-like domain-containing protein
86	 43.40	0	102441..102917	+	158	88606982	secB	APH_0097	-	preprotein translocase subunit SecB
87	 45.32	0	102988..103671	+	227	88607835	-	APH_0098	-	hypothetical protein
88	 45.78	+1	103886..104110	+	74	88607127	-	APH_0099	-	hypothetical protein
89	 45.58	+1	104079..104225	+	48	88606789	-	APH_0100	-	hypothetical protein
90	 42.77	0	104398..105669	-	423	88607349	-	APH_0101	-	M16 family peptidase
91	 48.04	+1	105977..106078	+	33	88606846	-	APH_0102	-	hypothetical protein
92	 46.33	+1	106210..107586	+	458	88607735	-	APH_0103	-	2-nitropropane dioxygenase family oxidoreductase
93	 42.86	0	107950..108243	-	97	88607011	-	APH_0104	-	uridylate kinase, truncation
94	 45.45	0	108932..109030	+	32	88607343	-	APH_0105	-	hypothetical protein
95	 43.30	0	109222..109833	-	203	88607568	ribE	APH_0106	-	riboflavin synthase subunit alpha
96	 40.94	0	110398..113817	-	1139	88607738	mfd	APH_0107	-	transcription-repair coupling factor
97	 40.94	0	113823..113993	-	56	88606998	-	APH_0108	-	hypothetical protein
98	 46.80	+1	114020..114472	+	150	88607880	rnhA	APH_0109	-	ribonuclease H1
99	 43.13	0	114511..117510	+	999	88606992	-	APH_0110	-	acetamidase/formamidase family protein
100	 44.90	0	117715..118449	+	244	88607790	pyrH	APH_0111	-	uridylate kinase
42.22	MEAN

3.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.