IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.93   STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.41	0	59..193	-	44	148651818	rpmH	PsycPRwf_0001	-	50S ribosomal protein L34
2	 45.36	0	1311..2723	+	470	148651819	-	PsycPRwf_0002	-	chromosomal replication initiator protein DnaA
3	 44.56	0	2984..4159	+	391	148651820	-	PsycPRwf_0003	-	DNA polymerase III, beta subunit
4	 45.51	0	4455..5834	+	459	148651821	-	PsycPRwf_0004	-	DNA replication and repair protein RecF
5	 46.40	0	6078..8732	+	884	148651822	-	PsycPRwf_0005	-	DNA gyrase, B subunit
6	 47.45	0	8933..9520	+	195	148651823	-	PsycPRwf_0006	-	hypothetical protein
7	 44.61	0	9752..10735	-	327	148651824	-	PsycPRwf_0007	-	putative SAM-dependent methyltransferase
8	 50.93	+1	11220..12026	+	268	148651825	-	PsycPRwf_0008	-	enoyl-CoA hydratase
9	 45.36	0	12247..13194	+	315	148651826	-	PsycPRwf_0009	-	auxin efflux carrier
10	 32.10	-2	13470..15656	-	728	148651827	-	PsycPRwf_0010	-	KAP P-loop domain-containing protein
11	 40.09	-1	15781..16209	-	142	148651828	-	PsycPRwf_0011	-	hypothetical protein
12	 43.49	0	16359..16811	+	150	148651829	-	PsycPRwf_0012	-	GCN5-related N-acetyltransferase
13	 44.01	0	16859..18010	+	383	148651830	-	PsycPRwf_0013	-	aminotransferase, class I and II
14	 46.44	0	18165..19919	-	584	148651831	-	PsycPRwf_0014	-	choline/carnitine/betaine transporter
15	 49.91	+1	20646..22244	+	532	148651832	guaA	PsycPRwf_0015	-	bifunctional GMP synthase/glutamine amidotransferase protein
16	 39.34	-1	22432..22764	-	110	148651833	-	PsycPRwf_0016	-	hypothetical protein
17	 51.12	+1	22768..23745	-	325	148651834	-	PsycPRwf_0017	-	alcohol dehydrogenase
18	 47.96	0	23938..26958	-	1006	148651835	-	PsycPRwf_0018	-	hypothetical protein
19	 47.00	0	27558..29159	+	533	148651836	-	PsycPRwf_0019	-	extracellular solute-binding protein
20	 47.05	0	29321..30997	+	558	148651837	-	PsycPRwf_0020	-	extracellular solute-binding protein
21	 49.05	0	31051..32736	+	561	148651838	-	PsycPRwf_0021	-	extracellular solute-binding protein
22	 46.69	0	32839..33759	+	306	148651839	-	PsycPRwf_0022	-	alkaline phosphatase
23	 45.70	0	33858..34763	+	301	148651840	-	PsycPRwf_0023	-	binding-protein-dependent transport systems inner membrane component
24	 49.57	+1	34884..35930	+	348	148651841	oppD	PsycPRwf_0024	-	oligopeptide transporter ATP-binding component
25	 49.52	+1	35934..36977	+	347	148651842	-	PsycPRwf_0025	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
26	 48.71	0	37111..37845	+	244	148651843	-	PsycPRwf_0026	-	hypothetical protein
27	 41.89	-1	37945..38505	+	186	148651844	-	PsycPRwf_0027	-	hypothetical protein
28	 40.58	-1	38638..38913	-	91	148651845	-	PsycPRwf_0028	-	hypothetical protein
29	 53.99	+2	39113..40153	-	346	148651846	-	PsycPRwf_0029	-	2-nitropropane dioxygenase, NPD
30	 41.45	-1	40323..41258	-	311	148651847	-	PsycPRwf_0030	-	hypothetical protein
31	 50.93	+1	41323..42834	-	503	148651848	-	PsycPRwf_0031	-	MATE efflux family protein
32	 48.96	0	43098..44633	-	511	148651849	-	PsycPRwf_0032	-	hypothetical protein
33	 51.01	+1	44949..45491	-	180	148651850	-	PsycPRwf_0033	-	hypothetical protein
34	 47.37	0	45621..46781	-	386	148651851	-	PsycPRwf_0034	-	hydrolase of the alpha/beta-hydrolase fold-like protein
35	 49.41	+1	46962..47558	-	198	148651852	-	PsycPRwf_0035	-	hypothetical protein
36	 46.52	0	47808..48512	+	234	148651853	-	PsycPRwf_0036	-	pseudouridine synthase
37	 47.13	0	48862..49977	+	371	148651854	-	PsycPRwf_0037	-	hypothetical protein
38	 47.27	0	50008..50667	-	219	148651855	-	PsycPRwf_0038	-	hypothetical protein
39	 49.21	0	50881..52014	+	377	148651856	-	PsycPRwf_0039	-	chaperone protein DnaJ
40	 42.36	-1	52036..52179	+	47	148651857	-	PsycPRwf_0040	-	hypothetical protein
41	 52.05	+1	52237..53064	+	275	148651858	-	PsycPRwf_0041	-	dihydrodipicolinate reductase
42	 44.44	0	53180..53710	-	176	148651859	-	PsycPRwf_0042	-	peptide deformylase
43	 43.37	0	54039..54287	-	82	148651860	-	PsycPRwf_0043	-	transglycosylase-associated protein
44	 49.54	+1	54628..56139	-	503	148651861	-	PsycPRwf_0044	-	UDP-N-acetylmuramate
45	 47.29	0	56198..56713	-	171	148651862	-	PsycPRwf_0045	-	disulphide bond formation protein DsbB
46	 47.82	0	56949..58529	-	526	148651863	-	PsycPRwf_0046	-	glutamate--cysteine ligase
47	 46.06	0	58951..59280	-	109	148651864	-	PsycPRwf_0047	-	iron-sulfur cluster insertion protein ErpA
48	 50.33	+1	59540..61534	+	664	148651865	-	PsycPRwf_0048	-	ABC transporter related
49	 47.84	0	61767..62786	+	339	148651866	-	PsycPRwf_0049	-	heat shock protein DnaJ domain-containing protein
50	 47.58	0	62826..63155	+	109	148651867	-	PsycPRwf_0050	-	hypothetical protein
51	 48.81	0	63310..64530	-	406	148651868	-	PsycPRwf_0051	-	serine/threonine transporter SstT
52	 47.70	0	65071..65571	-	166	148651869	-	PsycPRwf_0052	-	DNA polymerase III chi subunit, HolC
53	 47.12	0	65587..67233	-	548	148651870	-	PsycPRwf_0053	-	leucyl aminopeptidase
54	 48.62	0	67680..69164	+	494	148651871	-	PsycPRwf_0054	-	permease YjgP/YjgQ family protein
55	 48.74	0	69161..70510	+	449	148651872	-	PsycPRwf_0055	-	permease YjgP/YjgQ family protein
56	 46.96	0	70721..71329	-	202	148651873	-	PsycPRwf_0056	-	methyltransferase small
57	 48.50	0	71419..72117	-	232	148651874	-	PsycPRwf_0057	-	phosphoglycolate phosphatase
58	 48.70	0	72142..72642	-	166	148651875	-	PsycPRwf_0058	-	hypothetical protein
59	 43.47	0	72940..73383	-	147	148651876	-	PsycPRwf_0059	-	hypothetical protein
60	 46.25	0	73612..74238	+	208	148651877	hisB	PsycPRwf_0060	-	imidazoleglycerol-phosphate dehydratase
61	 48.27	0	74243..74878	+	211	148651878	hisH	PsycPRwf_0061	-	imidazole glycerol phosphate synthase subunit HisH
62	 43.97	0	75246..75593	+	115	148651879	-	PsycPRwf_0062	-	hypothetical protein
63	 44.14	0	75685..76128	+	147	148651880	-	PsycPRwf_0063	-	transmembrane pair domain-containing protein
64	 49.19	0	76195..78975	-	926	148651881	acnA	PsycPRwf_0064	-	aconitate hydratase
65	 42.50	-1	79483..79842	-	119	148651882	-	PsycPRwf_0065	-	hypothetical protein
66	 46.04	0	79932..81788	-	618	148651883	-	PsycPRwf_0066	-	amidohydrolase 3
67	 45.28	0	82072..83142	-	356	148651884	-	PsycPRwf_0067	-	hypothetical protein
68	 51.57	+1	83647..84540	-	297	148651885	-	PsycPRwf_0068	-	alpha/beta hydrolase fold
69	 46.73	0	84811..86415	+	534	148651886	-	PsycPRwf_0069	-	cholesterol oxidase
70	 47.29	0	86426..87457	+	343	148651887	-	PsycPRwf_0070	-	lipoyltransferase and lipoate-protein ligase
71	 40.89	-1	87576..87959	+	127	148651888	-	PsycPRwf_0071	-	hypothetical protein
72	 42.47	-1	88199..88789	-	196	148651889	-	PsycPRwf_0072	-	cytochrome B561
73	 49.57	+1	89243..91897	-	884	148651890	-	PsycPRwf_0073	-	hypothetical protein
74	 44.62	0	92102..92863	-	253	148651891	-	PsycPRwf_0074	-	C factor cell-cell signaling protein
75	 45.49	0	93199..93774	+	191	148651892	-	PsycPRwf_0075	-	stress protein
76	 44.81	0	93929..95017	+	362	148651893	-	PsycPRwf_0076	-	hypothetical protein
77	 47.57	0	95318..95893	+	191	148651894	-	PsycPRwf_0077	-	stress protein
78	 47.01	0	95983..96735	+	250	148651895	-	PsycPRwf_0078	-	hypothetical protein
79	 48.38	0	96792..97409	+	205	148651896	-	PsycPRwf_0079	-	stress protein
80	 49.80	+1	97552..98790	-	412	148651897	-	PsycPRwf_0080	-	stress protein
81	 48.53	0	99115..100233	+	372	148651898	-	PsycPRwf_0081	-	hypothetical protein
82	 51.29	+1	100375..101655	+	426	148651899	-	PsycPRwf_0082	-	hypothetical protein
83	 47.60	0	101658..102512	+	284	148651900	-	PsycPRwf_0083	-	hypothetical protein
84	 49.00	0	102631..103830	+	399	148651901	-	PsycPRwf_0084	-	hypothetical protein
85	 50.19	+1	103978..105015	+	345	148651902	-	PsycPRwf_0085	-	citrate lyase beta subunit-like protein
86	 51.00	+1	105041..105742	-	233	148651903	-	PsycPRwf_0086	-	ABC transporter related
87	 51.69	+1	105835..106635	-	266	148651904	-	PsycPRwf_0087	-	GDSL family lipase
88	 48.22	0	106771..107388	-	205	148651905	-	PsycPRwf_0088	-	GCN5-related N-acetyltransferase
89	 46.28	0	107494..108798	-	434	148651906	avtA	PsycPRwf_0089	-	valine--pyruvate transaminase
90	 51.32	+1	108859..110148	-	429	148651907	-	PsycPRwf_0090	-	major facilitator transporter
91	 44.98	0	110349..110597	-	82	148651908	-	PsycPRwf_0091	-	hypothetical protein
92	 49.83	+1	110832..112007	-	391	148651909	-	PsycPRwf_0092	-	ApbE family lipoprotein
93	 49.19	0	112127..112927	-	266	148651910	-	PsycPRwf_0093	-	short-chain dehydrogenase/reductase SDR
94	 41.67	-1	113061..114344	+	427	148651911	-	PsycPRwf_0094	-	transposase, IS4 family protein
95	 46.41	0	114491..115729	-	412	148651912	-	PsycPRwf_0095	-	Na(+)-translocating NADH-quinone reductase subunit F
96	 44.17	0	115794..116402	-	202	148651913	-	PsycPRwf_0096	-	Na(+)-translocating NADH-quinone reductase subunit E
97	 42.81	0	116402..117076	-	224	148651914	-	PsycPRwf_0097	-	Na(+)-translocating NADH-quinone reductase subunit D
98	 46.41	0	117078..117941	-	287	148651915	-	PsycPRwf_0098	-	Na(+)-translocating NADH-quinone reductase subunit C
99	 48.01	0	117925..119157	-	410	148651916	-	PsycPRwf_0099	-	Na(+)-translocating NADH-quinone reductase subunit B
100	 48.35	0	119163..120527	-	454	148651917	-	PsycPRwf_0100	-	Na(+)-translocating NADH-quinone reductase subunit A
45.93	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.