IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.57   STD DEV: 3.68
Ralstonia pickettii 12J chromosome 1, complete sequence - 1..3942557
3709 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.27	0	328..1917	+	529	187927113	-	Rpic_0001	-	chromosomal replication initiator protein DnaA
2	 61.47	0	2194..3309	+	371	187927114	-	Rpic_0002	-	DNA polymerase III, beta subunit
3	 63.74	0	3438..5966	+	842	187927115	-	Rpic_0003	-	DNA gyrase, B subunit
4	 51.34	-2	6281..8413	+	710	187927116	-	Rpic_0004	-	N-6 DNA methylase
5	 55.63	-2	8418..8852	+	144	187927117	-	Rpic_0005	-	hypothetical protein
6	 58.39	-1	9044..9454	-	136	187927118	-	Rpic_0006	-	hypothetical protein
7	 62.60	0	10376..10744	+	122	187927119	-	Rpic_0007	-	hypothetical protein
8	 63.64	0	10906..11763	-	285	187927120	-	Rpic_0008	-	Integrase catalytic region
9	 65.15	0	11817..12146	-	109	187927121	-	Rpic_0009	-	transposase IS3/IS911 family protein
10	 56.04	-2	12674..13633	+	319	187927122	-	Rpic_0010	-	Fimbrial protein
11	 63.89	0	13662..14021	-	119	187927123	-	Rpic_0011	-	hypothetical protein
12	 62.00	0	25869..27560	+	563	187927124	-	Rpic_0014	-	Polypeptide-transport-associated domain protein ShlB-type
13	 60.42	0	27822..28013	-	63	187927125	-	Rpic_0015	-	hypothetical protein
14	 69.15	+1	28338..29102	+	254	187927126	-	Rpic_0016	-	GntR domain protein
15	 64.86	0	29130..29957	+	275	187927127	-	Rpic_0017	-	extracellular solute-binding protein family 3
16	 65.44	0	30115..30849	+	244	187927128	-	Rpic_0018	-	polar amino acid ABC transporter, inner membrane subunit
17	 62.54	0	30846..31499	+	217	187927129	-	Rpic_0019	-	polar amino acid ABC transporter, inner membrane subunit
18	 65.45	0	31486..32223	+	245	187927130	-	Rpic_0020	-	ABC transporter related
19	 66.25	0	32307..33263	+	318	187927131	-	Rpic_0021	-	protein of unknown function UPF0187
20	 70.39	+1	33286..33957	-	223	187927132	-	Rpic_0022	-	hypothetical protein
21	 67.38	+1	34060..34758	-	232	187927133	-	Rpic_0023	-	transcriptional regulator, Crp/Fnr family
22	 66.30	0	34952..36586	+	544	187927134	-	Rpic_0024	-	AMP-dependent synthetase and ligase
23	 67.43	+1	36686..38254	-	522	187927135	-	Rpic_0025	-	40-residue YVTN family beta-propeller repeat protein
24	 64.29	0	38470..39015	+	181	187927136	-	Rpic_0026	-	GCN5-related N-acetyltransferase
25	 63.50	0	39109..39582	-	157	187927137	-	Rpic_0027	-	alkylhydroperoxidase like protein, AhpD family
26	 67.11	0	39715..40623	-	302	187927138	-	Rpic_0028	-	RNA polymerase, sigma-24 subunit, ECF subfamily
27	 66.98	0	40695..42893	-	732	187927139	-	Rpic_0029	-	PAS/PAC sensor hybrid histidine kinase
28	 65.04	0	43133..43747	+	204	187927140	-	Rpic_0030	-	Glutathione S-transferase domain
29	 68.93	+1	43755..44903	-	382	187927141	-	Rpic_0031	-	CBS domain containing membrane protein
30	 70.71	+1	45136..45333	+	65	187927142	-	Rpic_0032	-	hypothetical protein
31	 68.77	+1	45347..46393	+	348	187927143	-	Rpic_0033	-	autotransporter-associated beta strand repeat protein
32	 68.57	+1	46398..47237	-	279	187927144	-	Rpic_0034	-	transcriptional regulator, AraC family
33	 64.63	0	47549..47842	+	97	187927145	-	Rpic_0035	-	GYD family protein
34	 66.16	0	47913..49103	-	396	187927146	-	Rpic_0036	-	Methionine adenosyltransferase
35	 67.73	+1	49343..50191	+	282	187927147	-	Rpic_0037	-	lipid A biosynthesis acyltransferase
36	 63.98	0	50205..51098	+	297	187927148	-	Rpic_0038	-	lipid A biosynthesis acyltransferase
37	 66.33	0	51188..52066	+	292	187927149	-	Rpic_0039	-	Diaminopimelate epimerase
38	 60.51	0	52114..52941	+	275	187927150	-	Rpic_0040	-	protein of unknown function DUF344
39	 63.72	0	53067..53744	-	225	187927151	-	Rpic_0041	-	orotate phosphoribosyltransferase
40	 61.58	0	53778..54563	+	261	187927152	-	Rpic_0042	-	exodeoxyribonuclease III Xth
41	 66.96	0	54691..55704	+	337	187927153	-	Rpic_0043	-	N-acetyl-gamma-glutamyl-phosphate reductase
42	 62.93	0	55777..56685	-	302	187927154	-	Rpic_0044	-	band 7 protein
43	 65.67	0	56994..57794	-	266	187927155	-	Rpic_0045	-	protein of unknown function DUF218
44	 65.50	0	58107..59051	-	314	187927156	-	Rpic_0046	-	peptidase M48 Ste24p
45	 66.98	0	59149..60438	+	429	187927157	-	Rpic_0047	-	major facilitator superfamily MFS_1
46	 66.33	0	60443..61636	-	397	187927158	-	Rpic_0048	-	protein of unknown function DUF185
47	 68.38	+1	61653..62471	+	272	187927159	-	Rpic_0049	-	short-chain dehydrogenase/reductase SDR
48	 60.40	0	62496..62894	+	132	187927160	-	Rpic_0050	-	hypothetical protein
49	 69.78	+1	63193..64122	-	309	187927161	-	Rpic_0051	-	Arginase/agmatinase/formiminoglutamase
50	 67.32	+1	64147..65373	-	408	187927162	-	Rpic_0052	-	ornithine aminotransferase
51	 67.53	+1	65492..66415	+	307	187927163	-	Rpic_0053	-	transcriptional regulator, LysR family
52	 69.46	+1	66502..67254	+	250	187927164	-	Rpic_0054	-	transcriptional regulator, TetR family
53	 67.79	+1	67303..68277	+	324	187927165	-	Rpic_0055	-	secretion protein HlyD family protein
54	 65.04	0	68274..69254	+	326	187927166	-	Rpic_0056	-	ABC transporter related
55	 62.20	0	69251..70414	+	387	187927167	-	Rpic_0057	-	ABC-2 type transporter
56	 66.32	0	70422..72161	+	579	187927168	-	Rpic_0058	-	RND efflux system, outer membrane lipoprotein, NodT family
57	 67.49	+1	72444..73409	-	321	187927169	-	Rpic_0059	-	2-dehydropantoate 2-reductase
58	 62.24	0	73564..74511	+	315	187927170	-	Rpic_0060	-	PP-loop domain protein
59	 67.32	+1	74849..76216	+	455	187927171	-	Rpic_0061	-	UDP-N-acetylglucosamine pyrophosphorylase
60	 65.42	0	76334..78172	+	612	187927172	-	Rpic_0062	-	glucosamine/fructose-6-phosphate aminotransferase, isomerizing
61	 70.92	+1	78297..78602	+	101	187927173	-	Rpic_0063	-	hypothetical protein
62	 64.47	0	78730..79002	+	90	187927174	-	Rpic_0064	-	hypothetical protein
63	 70.25	+1	79111..80031	+	306	187927175	-	Rpic_0065	-	Patatin
64	 66.27	0	80154..81167	+	337	187927176	-	Rpic_0066	-	zinc-binding alcohol dehydrogenase family protein
65	 69.51	+1	81169..82083	-	304	187927177	-	Rpic_0067	-	transcriptional regulator, LysR family
66	 66.39	0	82250..84040	-	596	187927178	-	Rpic_0068	-	thiamine pyrophosphate protein TPP binding domain protein
67	 60.38	0	84093..84569	-	158	187927179	-	Rpic_0069	-	Hemerythrin HHE cation binding domain protein
68	 64.76	0	84766..85236	+	156	187927180	-	Rpic_0070	-	PRC-barrel domain protein
69	 60.85	0	85298..85486	+	62	187927181	-	Rpic_0071	-	hypothetical protein
70	 63.84	0	85554..85907	-	117	187927182	-	Rpic_0072	-	Glyoxalase/bleomycin resistance protein/dioxygenase
71	 66.83	0	86034..87242	+	402	187927183	-	Rpic_0073	-	putative transcriptional regulator, GntR family
72	 68.64	+1	87263..87769	+	168	187927184	-	Rpic_0074	-	transcriptional regulator, AraC family
73	 66.91	0	87769..88185	+	138	187927185	-	Rpic_0075	-	Glyoxalase/bleomycin resistance protein/dioxygenase
74	 67.06	0	88182..88436	+	84	187927186	-	Rpic_0076	-	hypothetical protein
75	 72.43	+2	88744..89940	-	398	187927187	-	Rpic_0077	-	major facilitator superfamily MFS_1
76	 65.68	0	90003..90710	-	235	187927188	-	Rpic_0078	-	Glutathione S-transferase domain
77	 67.17	0	90805..91998	-	397	187927189	-	Rpic_0079	-	low temperature requirement A
78	 67.90	+1	92033..92680	-	215	187927190	-	Rpic_0080	-	Lysine exporter protein (LYSE/YGGA)
79	 53.91	-2	93079..93321	-	80	187927191	-	Rpic_0081	-	hypothetical protein
80	 66.67	0	93314..94294	-	326	187927192	-	Rpic_0082	-	protein of unknown function DUF6 transmembrane
81	 69.99	+1	94401..95123	-	240	187927193	-	Rpic_0083	-	transcriptional regulator, AraC family
82	 64.77	0	95357..98572	-	1071	187927194	-	Rpic_0084	-	transcriptional activator domain
83	 64.17	0	98936..100576	+	546	187927195	-	Rpic_0085	-	hypothetical protein
84	 64.15	0	100821..101177	-	118	187927196	-	Rpic_0086	-	protein of unknown function DUF427
85	 67.41	+1	101262..102464	-	400	187927197	-	Rpic_0087	-	Rh family protein/ammonium transporter
86	 71.44	+2	102724..103749	-	341	187927198	-	Rpic_0088	-	conserved hypothetical/unknown signal peptide protein
87	 64.90	0	104095..107382	+	1095	187927199	-	Rpic_0089	-	methylmalonyl-CoA mutase, large subunit
88	 63.04	0	107696..108550	+	284	187927200	-	Rpic_0090	-	3-hydroxybutyryl-CoA dehydrogenase
89	 67.13	0	108707..109564	+	285	187927201	-	Rpic_0091	-	phenazine biosynthesis protein PhzF family
90	 68.12	+1	109582..110130	-	182	187927202	-	Rpic_0092	-	GCN5-related N-acetyltransferase
91	 69.04	+1	110413..111888	-	491	187927203	-	Rpic_0095	-	protein of unknown function DUF1254
92	 66.67	0	112098..113081	-	327	187927204	-	Rpic_0096	-	2-nitropropane dioxygenase NPD
93	 65.94	0	113183..113731	-	182	187927205	-	Rpic_0097	-	intracellular protease, PfpI family
94	 67.10	0	113869..114795	+	308	187927206	-	Rpic_0098	-	alpha/beta hydrolase fold
95	 65.50	0	114805..115488	-	227	187927207	-	Rpic_0099	-	2OG-Fe(II) oxygenase
96	 70.04	+1	115479..116249	-	256	187927208	-	Rpic_0100	-	Sel1 domain protein repeat-containing protein
97	 66.01	0	116249..118528	-	759	187927209	-	Rpic_0101	-	TonB-dependent siderophore receptor
98	 67.56	+1	118803..119582	+	259	187927210	-	Rpic_0102	-	Enoyl-CoA hydratase/isomerase
99	 67.57	+1	119584..121356	+	590	187927211	-	Rpic_0103	-	protein of unknown function DUF1446
100	 65.45	0	121371..122525	+	384	187927212	-	Rpic_0104	-	acyl-CoA dehydrogenase domain protein
63.57	MEAN

3.68	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.