IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.00   STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.38	0	981..1718	-	245	17227498	-	all0002	-	hypothetical protein
2	 42.33	0	2617..2805	-	62	17227499	-	asl0003	-	hypothetical protein
3	 47.89	+1	3418..4365	-	315	17227500	atpC	all0004	-	F0F1 ATP synthase subunit gamma
4	 46.55	+1	4454..5974	-	506	17227501	atpA	all0005	-	F0F1 ATP synthase subunit alpha
5	 44.57	0	6138..6689	-	183	17227502	atpD	all0006	-	F0F1 ATP synthase subunit delta
6	 46.81	+1	6686..7249	-	187	17227503	atpF	all0007	-	F0F1 ATP synthase subunit B
7	 45.33	0	7359..7850	-	163	17227504	atpG	all0008	-	F0F1 ATP synthase subunit B'
8	 47.56	+1	7996..8241	-	81	17227505	atpH	asl0009	-	F0F1 ATP synthase subunit C
9	 42.99	0	8324..9079	-	251	17227506	atpI	all0010	-	F0F1 ATP synthase subunit A
10	 40.65	0	9132..9500	-	122	17227507	atp1	all0011	-	ATP synthase subunit 1
11	 43.33	0	10130..11329	-	399	17227508	-	all0012	-	hypothetical protein
12	 34.71	-1	11560..11850	+	96	17227509	-	asr0013	-	hypothetical protein
13	 30.30	-2	11847..12275	+	142	17227510	-	alr0014	-	hypothetical protein
14	 43.54	0	12728..13168	-	146	17227511	-	all0015	-	transposase
15	 45.31	0	13138..13521	-	127	17227512	-	all0016	-	transposase
16	 28.74	-2	13600..14121	-	173	17227513	-	all0017	-	hypothetical protein
17	 32.32	-2	14319..14714	+	131	17227514	-	alr0018	-	transposase
18	 34.95	-1	14903..15274	+	123	17227515	-	alr0019	-	transposase
19	 46.34	+1	15778..19176	+	1132	17227516	apcE	alr0020	-	phycobilisome core-membrane linker protein
20	 50.62	+2	19615..20100	+	161	17227517	apcA	alr0021	-	allophycocyanin alpha subunit
21	 47.24	+1	20166..20654	+	162	17227518	apcB	alr0022	-	allophycocyanin beta subunit
22	 44.93	0	20870..21076	+	68	17227519	apcC	asr0023	-	phycobilisome core linker protein
23	 42.00	0	21221..22039	+	272	17227520	-	alr0024	-	hypothetical protein
24	 47.17	+1	22144..22584	-	146	17227521	-	all0025	-	hypothetical protein
25	 40.09	0	22723..22944	-	73	17227522	-	asl0026	-	hypothetical protein
26	 42.28	0	23018..23263	-	81	17227523	-	asl0027	-	hypothetical protein
27	 40.15	0	23449..23844	-	131	17227524	-	all0028	-	hypothetical protein
28	 42.59	0	24350..28033	+	1227	17227525	-	alr0029	-	WD-40 repeat-containing protein
29	 38.13	0	28285..30057	+	590	17227526	-	alr0030	-	hypothetical protein
30	 41.51	0	30263..31741	+	492	17227527	glgA	alr0031	-	glycogen synthase
31	 37.15	-1	31875..33290	-	471	17227528	-	all0032	-	menaquinone-specific isochorismate synthase
32	 41.61	0	33548..34477	+	309	17227529	menA	alr0033	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
33	 45.28	0	34486..35448	+	320	17227530	menC	alr0034	-	O-succinylbenzoate synthase
34	 40.91	0	35433..36884	+	483	17227531	menE	alr0035	-	O-succinylbenzoic acid--CoA ligase
35	 46.53	+1	36976..38331	-	451	17227532	murF	all0036	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase
36	 37.36	-1	38535..38981	-	148	17227533	-	all0037	-	hypothetical protein
37	 43.32	0	39857..40927	+	356	17227534	rfbB	alr0038	-	dTDP-glucose 4-6-dehydratase
38	 43.49	0	40951..41826	+	291	17227535	-	alr0039	-	hypothetical protein
39	 42.34	0	41960..43492	-	510	17227536	-	all0040	-	hypothetical protein
40	 45.98	0	43542..44498	-	318	17227537	-	all0041	-	hypothetical protein
41	 43.35	0	44511..45458	-	315	17227538	-	all0042	-	hypothetical protein
42	 45.71	0	46643..46852	+	69	17227539	-	asr0043	-	hypothetical protein
43	 45.74	0	46892..47278	+	128	17227540	-	alr0044	-	hypothetical protein
44	 45.32	0	47278..47736	+	152	17227541	-	alr0045	-	hypothetical protein
45	 38.78	0	47902..48195	-	97	17227542	-	asl0046	-	hypothetical protein
46	 43.98	0	48470..50065	-	531	17227543	-	all0047	-	hypothetical protein
47	 49.01	+1	50091..50696	-	201	17227544	-	all0048	-	hypothetical protein
48	 46.43	+1	51283..53679	-	798	161353751	mutS	all0049	-	recombination and DNA strand exchange inhibitor protein
49	 38.05	0	53882..54919	-	345	17227546	-	all0050	-	hypothetical protein
50	 46.65	+1	55119..56282	+	387	17227547	-	alr0051	-	inositol-5-monophosphate dehydrogenase
51	 45.06	0	56642..56965	+	107	17227548	trxA	alr0052	-	thioredoxin
52	 43.46	0	57224..58309	+	361	17227549	-	alr0053	-	hypothetical protein
53	 46.52	+1	58472..59791	+	439	17227550	-	alr0054	-	hypothetical protein
54	 38.99	0	60168..61811	+	547	17227551	-	alr0055	-	hypothetical protein
55	 42.98	0	61836..62198	+	120	17227552	-	alr0056	-	hypothetical protein
56	 34.52	-1	62218..62385	+	55	17227553	-	asr0057	-	hypothetical protein
57	 42.50	0	62394..63419	+	341	17227554	-	alr0058	-	D-lactate dehydrogenase
58	 38.14	0	63555..65738	-	727	17227555	-	all0059	-	hypothetical protein
59	 42.71	0	66556..66843	-	95	17227556	-	asl0060	-	hypothetical protein
60	 33.57	-2	67154..67987	-	277	17227557	-	all0061	-	site-specific DNA-methyltransferase
61	 41.55	0	68148..68354	+	68	17227558	-	asr0062	-	hypothetical protein
62	 44.28	0	68534..68935	+	133	17227559	rbfA	alr0063	-	ribosome-binding factor A
63	 44.73	0	69988..70224	+	78	17227560	-	asr0064	-	hypothetical protein
64	 44.73	0	70601..70951	-	116	17227561	-	all0065	-	hypothetical protein
65	 41.83	0	71103..71702	-	199	17227562	dcd	all0066	-	deoxycytidine triphosphate deaminase
66	 43.20	0	71745..72281	-	178	17227563	-	all0067	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
67	 43.60	0	72595..73149	+	184	17227564	-	alr0068	-	adenylate kinase
68	 43.68	0	73290..74033	+	247	17227565	rph	alr0069	-	ribonuclease PH
69	 43.17	0	74146..74958	-	270	17227566	-	all0070	-	superoxide dismutase
70	 33.49	-2	75171..75794	-	207	17227567	-	all0071	-	hypothetical protein
71	 45.33	0	75965..76639	+	224	17227568	-	alr0072	-	two-component response regulator
72	 43.06	0	76760..77551	+	263	17227569	hisB	alr0073	-	imidazoleglycerol-phosphate dehydratase
73	 41.20	0	78171..79187	+	338	17227570	-	alr0074	-	hypothetical protein
74	 42.89	0	79339..80814	+	491	17227571	-	alr0075	-	hypothetical protein
75	 38.37	0	80974..81747	+	257	17227572	-	alr0076	-	hypothetical protein
76	 32.77	-2	81759..82652	+	297	17227573	-	alr0077	-	ABC transporter ATP-binding protein
77	 34.59	-1	82725..83282	+	185	17227574	-	alr0078	-	hypothetical protein
78	 43.53	0	83290..84525	+	411	17227575	-	alr0079	-	esterase
79	 40.57	0	84908..85294	+	128	17227576	-	alr0080	-	hypothetical protein
80	 43.84	0	85949..86167	+	72	17227577	-	asr0081	-	hypothetical protein
81	 48.53	+1	86231..87421	-	396	17227578	ribD	all0082	-	riboflavin biosynthesis protein
82	 37.68	-1	87523..87936	+	137	17227579	-	alr0083	-	hypothetical protein
83	 41.80	0	87929..88306	+	125	17227580	-	alr0084	-	hypothetical protein
84	 44.05	0	88561..89073	-	170	17227581	-	all0085	-	hypothetical protein
85	 44.40	0	89188..90009	-	273	17227582	mreC	all0086	-	rod shape-determining protein
86	 46.74	+1	90105..91148	-	347	17227583	mreB	all0087	-	rod shape-determining protein
87	 42.22	0	91483..91842	+	119	17227584	-	alr0088	-	single-strand DNA-binding protein
88	 46.55	+1	91903..92568	-	221	17227585	-	all0089	-	hypothetical protein
89	 41.52	0	92574..92744	-	56	17227586	-	asl0090	-	hypothetical protein
90	 46.09	0	93059..94516	+	485	17227587	-	alr0091	-	Na+/H+-exchanging protein
91	 46.66	+1	95168..97051	+	627	17227588	-	alr0092	-	N-acetylmuramoyl-L-alanine amidase
92	 45.22	0	97350..99233	+	627	17227589	-	alr0093	-	N-acetylmuramoyl-L-alanine amidase
93	 46.30	+1	99384..100262	+	292	17227590	-	alr0094	-	glutamate racemase
94	 34.76	-1	100490..100699	-	69	17227591	-	asl0095	-	hypothetical protein
95	 44.86	0	101711..102682	+	323	17227592	sds	alr0096	-	solanesyl diphosphate synthase
96	 43.59	0	102778..102933	-	51	17227593	-	asl0097	-	hypothetical protein
97	 40.61	0	103430..103594	+	54	17227594	-	asr0098	-	hypothetical protein
98	 43.43	0	103683..104663	+	326	17227595	-	alr0099	-	hypothetical protein
99	 42.37	0	104656..104832	+	58	17227596	-	asr0100	-	hypothetical protein
100	 42.99	0	104851..105627	+	258	17227597	-	alr0101	-	hypothetical protein
42.00	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.