IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.93	0	24..1520	+	498	87198027	-	Saro_0001	-	chromosomal replication initiator protein DnaA
2	 66.54	0	1629..2423	+	264	87198028	-	Saro_0002	-	UBA/THIF-type NAD/FAD binding fold protein
3	 66.81	0	2412..3131	-	239	87198029	-	Saro_0003	-	NAD-dependent deacetylase
4	 67.63	0	3158..3886	+	242	87198030	-	Saro_0004	-	dihydrodipicolinate reductase
5	 67.09	0	3946..5124	+	392	87198031	-	Saro_0005	-	peptidase M48, Ste24p
6	 63.22	0	5121..5816	+	231	87198032	-	Saro_0006	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
7	 65.41	0	5813..6211	+	132	87198033	-	Saro_0007	-	hypothetical protein
8	 65.23	0	6244..7563	-	439	87198034	-	Saro_0008	-	sodium:dicarboxylate symporter
9	 67.51	0	7692..8762	-	356	87198035	-	Saro_0009	-	chorismate synthase
10	 64.10	0	8836..9147	+	103	87198036	-	Saro_0010	-	hypothetical protein
11	 64.66	0	9144..9491	+	115	87198037	-	Saro_0011	-	hypothetical protein
12	 64.72	0	9493..10056	+	187	87198038	-	Saro_0012	-	nicotinamide mononucleotide transporter
13	 64.37	0	10050..10571	+	173	87198039	-	Saro_0013	-	ATPase/kinase involved in NAD metabolism-like
14	 57.82	-2	10639..11079	-	146	87198040	-	Saro_0014	-	biopolymer transport protein ExbD/TolR
15	 61.35	-1	11122..11610	-	162	87198041	-	Saro_0015	-	biopolymer transport ExbD protein
16	 63.20	0	11772..12521	-	249	87198042	-	Saro_0016	-	MotA/TolQ/ExbB proton channel
17	 66.21	0	12595..13257	-	220	87198043	-	Saro_0017	-	TonB-like
18	 68.88	+1	13602..14504	+	300	87198044	-	Saro_0018	-	hypothetical protein
19	 66.74	0	14577..15884	+	435	87198045	-	Saro_0019	-	homoserine dehydrogenase
20	 68.99	+1	15903..16376	-	157	87198046	-	Saro_0020	-	hypothetical protein
21	 68.48	0	16582..17574	+	330	87198047	glpX	Saro_0021	-	fructose 1,6-bisphosphatase II
22	 61.45	-1	17734..19323	+	529	87198048	-	Saro_0022	-	hypothetical protein
23	 64.24	0	19422..23705	-	1427	87198049	-	Saro_0023	-	DNA-directed RNA polymerase subunit beta'
24	 64.49	0	23796..27974	-	1392	87198050	rpoB	Saro_0024	-	DNA-directed RNA polymerase subunit beta
25	 70.63	+1	28418..29299	+	293	87198051	-	Saro_0025	-	hypothetical protein
26	 74.51	+2	29522..29674	+	50	87198052	-	Saro_0026	-	hypothetical protein
27	 62.71	0	29703..30233	+	176	87198053	-	Saro_0027	-	hypothetical protein
28	 62.61	0	30233..30454	+	73	87198054	-	Saro_0028	-	XRE family transcriptional regulator
29	 65.11	0	30749..31261	+	170	87198055	rplJ	Saro_0029	-	50S ribosomal protein L10
30	 61.02	-1	31331..31702	+	123	87198056	rplL	Saro_0030	-	50S ribosomal protein L7/L12
31	 67.78	0	31788..33140	-	450	87198057	-	Saro_0031	-	periplasmic sensor signal transduction histidine kinase
32	 66.46	0	33228..33710	-	160	87198058	-	Saro_0032	-	cytochrome c, class I
33	 69.32	+1	33831..35222	+	463	87198059	-	Saro_0033	-	MATE efflux family protein
34	 63.54	0	35373..35660	+	95	87198060	-	Saro_0034	-	chaperonin Cpn10
35	 64.84	0	35710..37353	+	547	87198061	groEL	Saro_0035	-	chaperonin GroEL
36	 67.21	0	37528..39198	+	556	87198062	-	Saro_0036	-	histidine kinase
37	 67.40	0	39195..39740	-	181	87198063	-	Saro_0037	-	GCN5-related N-acetyltransferase
38	 68.24	0	39737..40942	-	401	87198064	-	Saro_0038	-	hypothetical protein
39	 65.13	0	41050..44232	-	1060	87198065	-	Saro_0039	-	acriflavin resistance protein
40	 70.09	+1	44243..45412	-	389	87198066	-	Saro_0040	-	secretion protein HlyD
41	 65.00	0	45711..46010	-	99	87198067	-	Saro_0041	-	hypothetical protein
42	 63.66	0	46025..46357	-	110	87198068	-	Saro_0042	-	hypothetical protein
43	 69.78	+1	46499..47653	+	384	87198069	-	Saro_0043	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
44	 68.46	0	47669..48058	-	129	87198070	-	Saro_0044	-	hypothetical protein
45	 67.91	0	48084..49208	+	374	87198071	-	Saro_0045	-	beta-lactamase
46	 70.22	+1	49205..50020	-	271	87198072	-	Saro_0046	-	phenazine biosynthesis PhzC/PhzF protein
47	 66.67	0	50017..50994	-	325	87198073	-	Saro_0047	-	cation diffusion facilitator family transporter
48	 66.67	0	51006..51617	-	203	87198074	-	Saro_0048	-	pyridoxamine 5'-phosphate oxidase
49	 67.48	0	51839..52816	+	325	87198075	-	Saro_0049	-	heat shock protein DnaJ-like
50	 65.31	0	52820..53854	+	344	87198076	-	Saro_0050	-	ribonuclease BN
51	 63.43	0	53851..54654	+	267	87198077	-	Saro_0051	-	enoyl-[acyl-carrier-protein] reductase [NADH]
52	 67.01	0	54739..55320	-	193	87198078	-	Saro_0052	-	hypothetical protein
53	 68.23	0	55425..55937	-	170	87198079	-	Saro_0053	-	ubiquinone biosynthesis protein COQ7
54	 67.49	0	55939..56421	-	160	87198080	-	Saro_0054	-	disulphide bond formation protein DsbB
55	 66.59	0	56435..57826	-	463	87198081	-	Saro_0055	-	C-terminal processing peptidase-3
56	 73.01	+2	57928..59172	-	414	87198082	-	Saro_0056	-	peptidase M23B
57	 67.84	0	59181..59606	-	141	87198083	-	Saro_0057	-	hypothetical protein
58	 64.50	0	59701..60162	-	153	87198084	-	Saro_0058	-	Iojap-related protein
59	 69.58	+1	60203..60889	-	228	87198085	nadD	Saro_0059	-	nicotinic acid mononucleotide adenylyltransferase
60	 70.42	+1	60853..62130	-	425	87198086	-	Saro_0060	-	glutamate-5-semialdehyde dehydrogenase
61	 67.61	0	62365..63528	+	387	87198087	-	Saro_0061	-	peptidase M23B
62	 68.66	+1	63536..63886	+	116	87198088	-	Saro_0062	-	hypothetical protein
63	 67.38	0	64024..64728	+	234	87198089	-	Saro_0063	-	hypothetical protein
64	 67.27	0	64795..65796	-	333	87198090	-	Saro_0064	-	alcohol dehydrogenase
65	 65.89	0	65835..66218	-	127	87198091	-	Saro_0065	-	hypothetical protein
66	 65.24	0	66339..68717	+	792	87198092	-	Saro_0066	-	ATP dependent Clp protease
67	 69.46	+1	68777..69850	+	357	87198093	-	Saro_0067	-	putative mRNA 3-end processing factor
68	 67.17	0	69911..71506	+	531	87198094	-	Saro_0068	-	ATP-dependent DNA ligase
69	 67.93	0	71824..72219	+	131	87198095	-	Saro_0069	-	globin
70	 70.58	+1	72269..72907	+	212	87198096	-	Saro_0070	-	hypothetical protein
71	 70.14	+1	72885..73172	-	95	87198097	-	Saro_0071	-	hypothetical protein
72	 67.02	0	73153..73716	-	187	87198098	-	Saro_0072	-	transferase
73	 66.97	0	73731..74723	-	330	87198099	-	Saro_0073	-	delta-aminolevulinic acid dehydratase
74	 71.47	+1	74760..76301	-	513	87198100	-	Saro_0074	-	peptidase M23B
75	 64.92	0	76481..77512	+	343	87198101	-	Saro_0075	-	hypothetical protein
76	 65.43	0	77647..79581	-	644	87198102	-	Saro_0076	-	membrane protease FtsH catalytic subunit
77	 69.32	+1	79691..80671	-	326	87198103	-	Saro_0077	-	tRNA(Ile)-lysidine synthetase-like
78	 68.90	+1	80685..81668	-	327	87198104	-	Saro_0078	-	hypothetical protein
79	 69.76	+1	81777..82778	-	333	87198105	-	Saro_0079	-	hypothetical protein
80	 67.28	0	82906..85185	-	759	87198106	-	Saro_0080	-	phosphoenolpyruvate-protein phosphotransferase PtsP
81	 58.49	-2	85389..85547	-	52	87198107	-	Saro_0081	-	hypothetical protein
82	 58.59	-2	85777..85974	+	65	87198108	-	Saro_0082	-	hypothetical protein
83	 69.26	+1	86066..86605	+	179	87198109	-	Saro_0083	-	hypothetical protein
84	 68.91	+1	86610..88079	-	489	87198110	-	Saro_0084	-	glycerol kinase
85	 69.46	+1	88076..89545	-	489	87198111	-	Saro_0085	-	glycerol-3-phosphate dehydrogenase
86	 68.16	0	89584..90519	+	311	87198112	-	Saro_0086	-	beta-lactamase-like
87	 64.86	0	90501..91166	+	221	87198113	-	Saro_0087	-	hypothetical protein
88	 64.75	0	91248..91976	+	242	87198114	-	Saro_0088	-	hypothetical protein
89	 64.06	0	92038..93036	+	332	87198115	-	Saro_0089	-	quinolinate synthetase
90	 67.90	0	93172..94065	-	297	87198116	-	Saro_0090	-	hypothetical protein
91	 66.21	0	94149..95252	+	367	87198117	-	Saro_0091	-	NADH:flavin oxidoreductase/NADH oxidase
92	 67.12	0	95267..96148	+	293	87198118	-	Saro_0092	-	HpcH/HpaI aldolase
93	 70.23	+1	96131..96439	-	102	87198119	-	Saro_0093	-	hypothetical protein
94	 66.82	0	96436..97104	-	222	87198120	-	Saro_0094	-	lipoate-protein ligase B
95	 64.72	0	97182..98003	+	273	87198121	-	Saro_0095	-	hypothetical protein
96	 63.96	0	98012..98638	-	208	87198122	-	Saro_0096	-	generic methyltransferase
97	 67.95	0	98769..100091	+	440	87198123	-	Saro_0097	-	major facilitator transporter
98	 67.98	0	100138..101661	+	507	87198124	-	Saro_0098	-	O-antigen and teichoic acid-like export protein
99	 66.35	0	101654..102610	-	318	87198125	-	Saro_0099	-	CDP-alcohol phosphatidyltransferase
100	 67.40	0	102849..103934	+	361	87198126	-	Saro_0100	-	CDP-alcohol phosphatidyltransferase
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.