IslandPath Analysis: Helicobacter pylori Shi470



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.76   STD DEV: 4.11
Helicobacter pylori Shi470, complete genome - 1..1608548
1569 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.77	0	11..427	-	138	188526813	nusB	HPSH_00005	-	transcription antitermination protein NusB
2	 45.44	+1	429..899	-	156	188526814	ribH	HPSH_00010	-	riboflavin synthase subunit beta
3	 42.48	0	909..1739	-	276	188526815	-	HPSH_00015	-	2-dehydro-3-deoxyphosphooctonate aldolase
4	 40.39	0	1726..2391	-	221	188526816	-	HPSH_00020	-	beta-carbonic anhydrase
5	 39.62	0	2514..3197	+	227	188526817	-	HPSH_00025	-	orotidine 5'-phosphate decarboxylase
6	 41.52	0	3198..4028	+	276	188526818	panC	HPSH_00030	-	pantoate--beta-alanine ligase
7	 29.76	-2	7229..7312	-	27	188526819	-	HPSH_00045	-	hypothetical protein
8	 44.91	+1	7356..8996	-	546	188526820	groEL	HPSH_00050	-	chaperonin GroEL
9	 41.18	0	9021..9377	-	118	188526821	groES	HPSH_00055	-	co-chaperonin GroES
10	 39.40	0	9663..11342	+	559	188526822	dnaG	HPSH_00060	-	DNA primase
11	 41.22	0	11339..12391	+	350	188526823	-	HPSH_00065	-	argininosuccinate synthase
12	 35.14	0	12388..12498	+	36	188526824	-	HPSH_00070	-	hypothetical protein
13	 38.89	0	12483..13310	+	275	188526825	-	HPSH_00075	-	hypothetical protein
14	 39.36	0	13456..13737	+	93	188526826	-	HPSH_00080	-	hypothetical protein
15	 32.95	-1	13737..14000	+	87	188526827	-	HPSH_00085	-	hypothetical protein
16	 38.20	0	14002..16365	+	787	188526828	-	HPSH_00090	-	hypothetical protein
17	 39.45	0	16686..18026	+	446	188526829	-	HPSH_00095	-	hypothetical protein
18	 40.79	0	18121..19086	+	321	188526830	-	HPSH_00100	-	chemotaxis protein (cheV)
19	 42.61	0	19083..20300	+	405	188526831	-	HPSH_00105	-	carboxynorspermidine decarboxylase (nspC)
20	 45.72	+1	20310..20882	-	190	188526832	-	HPSH_00110	-	lipid A 1-phosphatase
21	 38.68	0	20893..22464	-	523	188526833	-	HPSH_00115	-	lipid A phosphoethanolamine transferase
22	 43.64	+1	22801..24867	-	688	188526834	-	HPSH_00120	-	outer membrane protein HopD
23	 41.27	0	25187..25312	+	41	188526835	-	HPSH_00125	-	hypothetical protein
24	 44.03	+1	25379..26659	-	426	188526836	gltA	HPSH_00130	-	type II citrate synthase
25	 42.96	+1	26857..28134	+	425	188526837	-	HPSH_00135	-	isocitrate dehydrogenase (icd)
26	 38.07	0	28206..28733	+	175	188526838	-	HPSH_00140	-	hypothetical protein
27	 39.57	0	28710..29366	-	218	188526839	-	HPSH_00145	-	dethiobiotin synthetase
28	 37.07	0	29370..29690	-	106	188526840	-	HPSH_00150	-	hypothetical protein
29	 38.65	0	29869..30282	+	137	188526841	-	HPSH_00155	-	hypothetical protein
30	 43.84	+1	30290..30565	+	91	188526842	-	HPSH_00160	-	hypothetical protein
31	 40.40	0	30565..32787	+	740	188526843	-	HPSH_00165	-	ATP-dependent C1p protease (clpA)
32	 42.74	0	32777..33127	+	116	188526844	-	HPSH_00170	-	aspartate alpha-decarboxylase
33	 40.59	0	33138..33440	+	100	188526845	-	HPSH_00175	-	hypothetical protein
34	 39.76	0	33440..34435	+	331	188526846	-	HPSH_00180	-	hypothetical protein
35	 38.54	0	34441..35496	+	351	188526847	-	HPSH_00185	-	NADH-ubiquinone oxidoreductase subunit
36	 36.84	0	35512..35625	+	37	188526848	-	HPSH_00190	-	comB7 putative lipoprotein
37	 40.73	0	35622..36365	+	247	188526849	-	HPSH_00195	-	comB8 competence protein
38	 36.44	0	36365..37330	+	321	188526850	-	HPSH_00200	-	comB9 competence protein
39	 41.42	0	37323..38459	+	378	188526851	-	HPSH_00205	-	comB10 competence protein
40	 39.84	0	38530..39942	+	470	188526852	-	HPSH_00210	-	mannose-6-phosphate isomerase
41	 40.75	0	39970..41115	+	381	188526853	-	HPSH_00215	-	GDP-D-mannose dehydratase (rfbD)
42	 41.37	0	41108..42040	+	310	188526854	-	HPSH_00220	-	nodulation protein (nolK)
43	 40.95	0	42120..42224	-	34	188526855	-	HPSH_00225	-	hypothetical protein
44	 41.14	0	42325..43323	-	332	188526856	-	HPSH_00230	-	hydrogenase expression/formation protein
45	 40.57	0	43326..45578	-	750	188526857	-	HPSH_00235	-	transcriptional regulator (hypF)
46	 40.28	0	45575..46567	-	330	188526858	-	HPSH_00240	-	hypothetical protein
47	 39.48	0	46626..47324	-	232	188526859	-	HPSH_00245	-	adenine specific DNA methyltransferase (dpnA)
48	 38.76	0	47321..48388	-	355	188526860	-	HPSH_00250	-	cytosine specific DNA methyltransferase (DDEM)
49	 34.83	0	48385..48585	-	66	188526861	-	HPSH_00255	-	hypothetical protein
50	 34.33	-1	48613..49611	-	332	188526862	-	HPSH_00260	-	hypothetical protein
51	 32.34	-1	49652..49852	-	66	188526863	-	HPSH_00265	-	adenine/cytosine DNA methyltransferase
52	 42.67	0	49833..51332	-	499	188526864	-	HPSH_00270	-	proline permease (putP)
53	 40.67	0	51359..54916	-	1185	188526865	-	HPSH_00275	-	Proline/pyrroline-5-carboxylate dehydrogenase
54	 39.52	0	55244..55453	+	69	188526866	-	HPSH_00280	-	hypothetical protein
55	 35.71	0	55564..55647	+	27	188526867	-	HPSH_00285	-	hypothetical protein
56	 26.98	-2	55641..55766	-	41	188526868	-	HPSH_00290	-	hypothetical protein
57	 40.23	0	55951..56661	+	236	188526869	-	HPSH_00295	-	hypothetical protein
58	 37.32	0	56631..57056	+	141	188526870	-	HPSH_00300	-	hypothetical protein
59	 35.04	0	57058..57408	+	116	188526871	-	HPSH_00305	-	hypothetical protein
60	 43.86	+1	59832..60629	-	265	188526872	-	HPSH_00320	-	urease accessory protein (ureH)
61	 44.33	+1	60629..61228	-	199	188526873	-	HPSH_00325	-	urease accessory protein
62	 40.73	0	61257..62000	-	247	188526874	-	HPSH_00330	-	urease accessory protein (ureF)
63	 40.16	0	62029..62541	-	170	188526875	ureE	HPSH_00335	-	urease accessory protein UreE
64	 44.39	+1	62543..63130	-	195	188526876	-	HPSH_00340	-	urea transporter
65	 24.32	-2	63198..63308	-	36	188526877	-	HPSH_00345	-	hypothetical protein
66	 44.39	+1	63323..65032	-	569	188526878	ureC	HPSH_00350	-	urease subunit alpha
67	 42.40	0	65036..65752	-	238	188526879	-	HPSH_00355	-	bifunctional urease subunit gamma/beta
68	 36.29	0	66115..66588	-	157	188526880	lspA	HPSH_00360	-	lipoprotein signal peptidase
69	 40.51	0	66582..67919	-	445	188526881	-	HPSH_00365	-	urease protein (ureC)
70	 39.26	0	68009..68278	+	89	188526882	rpsT	HPSH_00370	-	30S ribosomal protein S20
71	 42.49	0	68395..69453	+	352	188526883	prfA	HPSH_00375	-	peptide chain release factor 1
72	 42.35	0	69844..70098	+	84	188526884	-	HPSH_00380	-	hypothetical protein
73	 43.48	+1	70176..71417	+	413	188526885	-	HPSH_00385	-	outer membrane protein HorA
74	 42.17	0	71672..73459	+	595	188526886	-	HPSH_00390	-	hypothetical protein
75	 37.12	0	73754..73885	+	43	188526887	-	HPSH_00395	-	hypothetical protein
76	 39.22	0	73889..75910	-	673	188526888	-	HPSH_00400	-	methyl-accepting chemotaxis transducer (tlpC)
77	 42.56	0	76058..76447	-	129	188526889	rpsI	HPSH_00405	-	30S ribosomal protein S9
78	 40.85	0	76444..76869	-	141	188526890	rplM	HPSH_00410	-	50S ribosomal protein L13
79	 31.43	-1	76975..77079	-	34	188526891	-	HPSH_00415	-	hypothetical protein
80	 38.10	0	77060..77248	-	62	188526892	-	HPSH_00420	-	hypothetical protein
81	 40.61	0	77255..78601	-	448	188526893	-	HPSH_00425	-	malate:quinone oxidoreductase
82	 39.67	0	78661..80034	-	457	188526894	-	HPSH_00430	-	hypothetical protein
83	 38.97	0	80054..82039	-	661	188526895	-	HPSH_00435	-	RNA polymerase sigma factor RpoD
84	 43.10	+1	82230..82925	-	231	188526896	-	HPSH_00440	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
85	 43.01	+1	82936..83865	-	309	188526897	-	HPSH_00445	-	malonyl coenzyme A-acyl carrier protein transacylase
86	 40.17	0	85119..85952	+	277	188526898	-	HPSH_00465	-	type II restriction enzyme M protein (hsdM)
87	 39.17	0	85970..86860	-	296	188526899	-	HPSH_00470	-	alpha-1,2-fucosyltransferase
88	 37.48	0	86959..87489	-	176	188526900	-	HPSH_00475	-	hypothetical protein
89	 40.63	0	87562..88506	+	314	188526901	-	HPSH_00480	-	2-hydroxyacid dehydrogenase
90	 41.88	0	88834..89547	-	237	188526902	-	HPSH_00485	-	hypothetical protein
91	 40.18	0	89652..91112	-	486	188526903	-	HPSH_00490	-	threonine synthase
92	 39.37	0	91315..93351	+	678	188526904	-	HPSH_00495	-	methyl-accepting chemotaxis protein (tlpA)
93	 38.12	0	93351..94457	+	368	188526905	-	HPSH_00500	-	hypothetical protein
94	 35.56	0	94573..95334	+	253	188526906	-	HPSH_00505	-	hypothetical protein
95	 38.31	0	95317..96099	-	260	188526907	-	HPSH_00510	-	hypothetical protein
96	 42.05	0	96130..97827	-	565	188526908	-	HPSH_00515	-	methyl-accepting chemotaxis protein (tlpB)
97	 39.23	0	98036..99781	-	581	188526909	-	HPSH_00520	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
98	 44.87	+1	99921..100388	-	155	188526910	-	HPSH_00525	-	S-ribosylhomocysteinase
99	 48.03	+2	100423..101565	-	380	188526911	-	HPSH_00530	-	cystathionine gamma-synthase/cystathionine beta-lyase
100	 46.41	+1	101586..102503	-	305	188526912	-	HPSH_00535	-	cysteine synthetase
38.76	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.