IslandPath Analysis: Shewanella denitrificans OS217



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.58   STD DEV: 3.82
Shewanella denitrificans OS217, complete genome - 1..4545906
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.69	0	10..1398	+	462	91791370	dnaA	Sden_0001	-	chromosomal replication initiation protein
2	 44.32	0	1418..2518	+	366	91791371	-	Sden_0002	-	DNA polymerase III, beta subunit
3	 44.60	0	2617..3699	+	360	91791372	-	Sden_0003	-	DNA replication and repair protein RecF
4	 46.61	0	3715..6132	+	805	91791373	-	Sden_0004	-	DNA gyrase, B subunit
5	 47.01	0	6236..7441	-	401	91791374	-	Sden_0005	-	di-haem cytochrome c peroxidase
6	 46.50	0	7441..8154	-	237	91791375	-	Sden_0006	-	hypothetical protein
7	 47.63	0	8431..11172	+	913	91791376	-	Sden_0007	-	Na-Ca exchanger/integrin-beta4
8	 47.00	0	11263..13347	-	694	91791377	glyS	Sden_0008	-	glycyl-tRNA synthetase subunit beta
9	 48.34	0	13357..14262	-	301	91791378	glyQ	Sden_0009	-	glycyl-tRNA synthetase subunit alpha
10	 43.26	0	14373..14936	+	187	91791379	-	Sden_0010	-	DNA-3-methyladenine glycosylase I
11	 45.03	0	15084..18281	-	1065	91791380	-	Sden_0011	-	amidohydrolase
12	 45.33	0	18524..18973	-	149	91791381	-	Sden_0012	-	MOSC domain-containing protein
13	 44.72	0	18976..19221	-	81	91791382	-	Sden_0013	-	SirA-like protein
14	 49.57	+1	19738..20901	-	387	91791383	fadA	Sden_0014	-	3-ketoacyl-CoA thiolase
15	 47.05	0	20924..23074	-	716	162210779	fadB	Sden_0015	-	multifunctional fatty acid oxidation complex subunit alpha
16	 44.67	0	23301..24623	+	440	91791385	-	Sden_0016	-	proline dipeptidase
17	 47.05	0	24620..25246	+	208	91791386	-	Sden_0017	-	hypothetical protein
18	 46.36	0	25312..26769	+	485	91791387	-	Sden_0018	-	K+ transporter Trk
19	 44.51	0	26769..27296	+	175	91791388	-	Sden_0019	-	protoporphyrinogen oxidase
20	 44.44	0	27301..27606	-	101	91791389	-	Sden_0020	-	regulatory protein, ArsR
21	 47.94	0	27622..29031	-	469	91791390	trkA	Sden_0021	-	potassium transporter peripheral membrane component
22	 47.94	0	29050..30336	-	428	91791391	-	Sden_0022	-	sun protein
23	 49.27	0	30333..31292	-	319	91791392	-	Sden_0023	-	methionyl-tRNA formyltransferase
24	 46.39	0	31299..31811	-	170	91791393	-	Sden_0024	-	peptide deformylase
25	 45.59	0	31937..33046	+	369	91791394	-	Sden_0025	-	peptidoglycan-binding LysM
26	 47.20	0	33058..34146	+	362	91791395	-	Sden_0026	-	DNA processing protein DprA, putative
27	 39.87	-1	34149..34622	+	157	91791396	-	Sden_0027	-	hypothetical protein
28	 45.39	0	34705..35268	+	187	91791397	-	Sden_0028	-	DNA topoisomerase I
29	 48.68	0	35377..35943	+	188	91791398	-	Sden_0029	-	SUA5/yciO/yrdC-like protein
30	 49.46	+1	35954..36871	+	305	91791399	-	Sden_0030	-	coproporphyrinogen III oxidase
31	 45.86	0	36879..37349	-	156	91791400	-	Sden_0031	-	globin
32	 47.74	0	37525..38919	+	464	91791401	-	Sden_0032	-	amidohydrolase
33	 46.33	0	38937..40229	+	430	91791402	-	Sden_0033	-	amidohydrolase
34	 49.39	0	40277..41098	+	273	91791403	-	Sden_0034	-	shikimate 5-dehydrogenase
35	 41.20	-1	41134..41400	+	88	91791404	-	Sden_0035	-	hypothetical protein
36	 46.31	0	41465..42019	-	184	91791405	-	Sden_0036	-	carbonic anhydrase
37	 43.10	0	48640..49581	+	313	91791406	-	Sden_0037	-	integrase catalytic subunit
38	 43.21	0	50191..51132	-	313	91791407	-	Sden_0038	-	integrase catalytic subunit
39	 37.86	-2	51134..53167	+	677	91791408	-	Sden_0039	-	hypothetical protein
40	 36.43	-2	53406..54374	+	322	91791409	-	Sden_0040	-	hypothetical protein
41	 39.76	-1	54704..54952	+	82	91791410	-	Sden_0041	-	export protein FliQ
42	 38.55	-1	54915..55700	+	261	91791411	-	Sden_0042	-	type III secretion system inner membrane R protein
43	 37.30	-2	55703..56761	+	352	91791412	-	Sden_0043	-	type III secretion exporter
44	 40.19	-1	56758..58800	+	680	91791413	-	Sden_0044	-	type III secretion FHIPEP
45	 41.67	-1	58803..59450	+	215	91791414	-	Sden_0045	-	flagellar basal body rod protein-like protein
46	 42.26	0	59453..60214	+	253	91791415	-	Sden_0046	-	protein of unknown function DUF1078-like protein
47	 43.01	0	60215..61072	+	285	91791416	-	Sden_0047	-	flageller protein FlgA
48	 42.20	0	61062..61625	+	187	91791417	-	Sden_0048	-	flagellar L-ring protein
49	 40.68	-1	61625..62740	+	371	91791418	flgI	Sden_0049	-	flagellar basal body P-ring protein
50	 38.69	-1	62751..63086	+	111	91791419	-	Sden_0050	-	hypothetical protein
51	 42.97	0	63086..63469	+	127	91791420	-	Sden_0051	-	putative flagellar basal body rod protein FlgC
52	 43.99	0	63472..63762	+	96	91791421	-	Sden_0052	-	flagellar hook-basal body complex protein (FliE)
53	 41.82	0	63778..65097	+	439	91791422	-	Sden_0053	-	secretory protein YscJ/FliF
54	 38.41	-1	65090..65404	+	104	91791423	-	Sden_0054	-	hypothetical protein
55	 38.66	-1	65404..66117	+	237	91791424	-	Sden_0055	-	hypothetical protein
56	 42.79	0	66110..67420	+	436	91791425	-	Sden_0056	-	ATPase FliI/YscN
57	 39.39	-1	67427..67855	+	142	91791426	-	Sden_0057	-	hypothetical protein
58	 38.87	-1	67848..68642	+	264	91791427	-	Sden_0058	-	hypothetical protein
59	 37.50	-2	68643..69050	+	135	91791428	-	Sden_0059	-	flagellar hook capping protein
60	 39.19	-1	69065..70243	+	392	91791429	-	Sden_0060	-	protein of unknown function DUF1078-like protein
61	 40.42	-1	70243..70905	+	220	91791430	-	Sden_0061	-	hypothetical protein
62	 35.26	-2	70914..71225	+	103	91791431	-	Sden_0062	-	surface presentation of antigens (SPOA) protein
63	 39.57	-1	71500..72189	+	229	91791432	fliP	Sden_0063	-	flagellar biosynthesis protein FliP
64	 35.50	-2	72203..72757	+	184	91791433	-	Sden_0064	-	hypothetical protein
65	 44.57	0	72832..73098	-	88	91791434	-	Sden_0065	-	hypothetical protein
66	 48.11	0	73136..74272	-	378	91791435	-	Sden_0066	-	transport protein, putative
67	 48.71	0	74272..75006	-	244	91791436	-	Sden_0067	-	ABC transporter related
68	 50.13	+1	75009..76574	-	521	91791437	-	Sden_0068	-	peptidase S33, prolyl aminopeptidase
69	 52.31	+1	76662..77051	+	129	91791438	-	Sden_0069	-	regulatory protein GntR, HTH
70	 46.98	0	77058..77900	+	280	91791439	-	Sden_0070	-	ABC transporter related
71	 46.17	0	77897..79213	+	438	91791440	-	Sden_0071	-	hypothetical protein
72	 48.44	0	79325..81118	+	597	91791441	-	Sden_0072	-	AMP-dependent synthetase and ligase
73	 46.08	0	81233..81640	+	135	91791442	-	Sden_0073	-	thioesterase superfamily protein
74	 42.72	0	81743..82168	-	141	91791443	-	Sden_0074	-	thioesterase superfamily protein
75	 44.13	0	82387..83451	+	354	91791444	-	Sden_0075	-	hypothetical protein
76	 44.34	0	83458..86283	-	941	91791445	-	Sden_0076	-	GGDEF domain-containing protein
77	 46.46	0	86552..87229	-	225	91791446	-	Sden_0077	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
78	 45.72	0	87451..87894	+	147	91791447	-	Sden_0078	-	CMP/dCMP deaminase, zinc-binding
79	 46.75	0	87961..88437	+	158	91791448	-	Sden_0079	-	hypothetical protein
80	 39.92	-1	88680..89165	+	161	91791449	-	Sden_0080	-	hypothetical protein
81	 50.52	+1	89268..90512	-	414	91791450	-	Sden_0081	-	imidazolonepropionase
82	 50.14	+1	90669..91376	+	235	91791451	-	Sden_0082	-	histidine utilization repressor
83	 52.68	+1	91505..93199	+	564	91791452	-	Sden_0083	-	urocanate hydratase
84	 50.42	+1	93202..94734	+	510	91791453	-	Sden_0084	-	histidine ammonia-lyase
85	 50.10	+1	94806..95330	-	174	91791454	-	Sden_0085	-	hypothetical protein
86	 46.21	0	95589..96869	+	426	91791455	-	Sden_0086	-	MscS mechanosensitive ion channel
87	 35.75	-2	97393..97764	-	123	91791456	-	Sden_0087	-	glyoxalase/bleomycin resistance protein/dioxygenase
88	 47.75	0	99618..100172	-	184	91791457	-	Sden_0088	-	phospholipid/glycerol acyltransferase
89	 43.74	0	100347..100769	+	140	91791458	-	Sden_0089	-	hypothetical protein
90	 49.68	+1	100744..101520	-	258	91791459	-	Sden_0090	-	hypothetical protein
91	 47.41	0	101563..103224	-	553	91791460	-	Sden_0091	-	hypothetical protein
92	 42.42	0	103529..104122	+	197	91791461	-	Sden_0092	-	multiple antibiotic resistance (MarC)-related proteins
93	 44.63	0	104304..104666	+	120	91791462	-	Sden_0093	-	hypothetical protein
94	 46.07	0	104720..107317	+	865	91791463	-	Sden_0094	-	peptidase M6, immune inhibitor A
95	 42.11	0	107359..107928	-	189	91791464	-	Sden_0095	-	chorismate lyase
96	 39.80	-1	108069..108470	+	133	91791465	-	Sden_0096	-	flagellar basal body-associated protein FliL-like protein
97	 46.63	0	108476..109558	+	360	91791466	-	Sden_0097	-	putative SAM-dependent methyltransferase
98	 49.71	+1	109632..110480	+	282	91791467	-	Sden_0098	-	PfkB
99	 46.98	0	110599..112518	-	639	91791468	-	Sden_0099	-	chemotaxis sensory transducer
100	 48.45	0	112745..114391	-	548	91791469	-	Sden_0100	-	electron-transferring-flavoprotein dehydrogenase
45.58	MEAN

3.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.