IslandPath Analysis: Bacillus amyloliquefaciens FZB42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.32   STD DEV: 4.77
Bacillus amyloliquefaciens FZB42, complete genome - 1..3918589
3693 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.37	0	412..1752	+	446	154684519	dnaA	RBAM_000010	-	chromosomal replication initiation protein
2	 44.24	0	1937..3073	+	378	154684520	dnaN	RBAM_000020	-	DNA polymerase III subunit beta
3	 45.83	0	3208..3423	+	71	154684521	yaaA	RBAM_000030	-	YaaA
4	 45.28	0	3439..4551	+	370	154684522	recF	RBAM_000040	-	recombination protein F
5	 41.06	-1	4569..4814	+	81	154684523	yaaB	RBAM_000050	-	YaaB
6	 47.26	0	4871..6787	+	638	154684524	gyrB	RBAM_000060	-	DNA gyrase subunit B
7	 47.69	0	7081..9462	+	793	154684525	gyrA	RBAM_000070	-	DNA gyrase subunit A
8	 41.01	-1	14626..15576	-	316	154684526	yaaC	RBAM_000110	-	YaaC
9	 44.72	0	15697..17163	+	488	154684527	guaB	RBAM_000120	-	inositol-5-monophosphate dehydrogenase
10	 43.62	0	17316..18647	+	443	154684528	dacA	RBAM_000130	-	DacA
11	 49.60	0	18845..19729	+	294	154684529	pdxS	RBAM_000140	-	pyridoxine biosynthesis protein
12	 49.24	0	19751..20341	+	196	154684530	pdxT	RBAM_000150	-	glutamine amidotransferase subunit PdxT
13	 46.17	0	20661..21938	+	425	154684531	serS	RBAM_000160	-	seryl-tRNA synthetase
14	 53.23	+1	21949..23094	-	381	154684532	glxK	RBAM_000170	-	GlxK
15	 43.27	0	23535..24188	-	217	154684533	dcK	RBAM_000190	-	deoxyadenosine/deoxycytidine kinase
16	 42.15	0	24185..24808	-	207	154684534	dgk	RBAM_000200	-	deoxyguanosine kinase
17	 48.40	0	24904..26184	-	426	154684535	yaaH	RBAM_000210	-	YaaH
18	 42.21	0	26259..26810	-	183	154684536	yaaI	RBAM_000220	-	YaaI
19	 52.80	+1	26893..27375	+	160	154684537	yaaJ	RBAM_000230	-	YaaJ
20	 46.87	0	27858..29549	+	563	154684538	dnaX	RBAM_000250	-	DNA polymerase III subunits gamma and tau
21	 43.33	0	29568..29897	+	109	154684539	yaaK	RBAM_000260	-	hypothetical protein
22	 45.06	0	29912..30508	+	198	154684540	recR	RBAM_000270	-	recombination protein RecR
23	 39.56	-1	30527..30751	+	74	154684541	yaaL	RBAM_000280	-	YaaL
24	 44.70	0	30812..31075	+	87	154684542	bofA	RBAM_000290	-	BofA
25	 35.38	-2	36321..36515	+	64	154684543	csfB	RBAM_000330	-	CsfB
26	 44.23	0	36663..37277	+	204	154684544	xpaC	RBAM_000340	-	XpaC
27	 47.10	0	37293..38411	+	372	154684545	yaaN	RBAM_000350	-	YaaN
28	 47.49	0	38489..39922	+	477	154684546	yaaO	RBAM_000360	-	YaaO
29	 46.64	0	39919..40557	+	212	154684547	tmk	RBAM_000370	-	thymidylate kinase
30	 49.09	0	40628..40957	+	109	154684548	yaaQ	RBAM_000380	-	YaaQ
31	 41.27	-1	40970..41410	+	146	154684549	yaaR	RBAM_000390	-	YaaR
32	 43.13	0	41422..42411	+	329	154684550	holB	RBAM_000400	-	DNA polymerase III subunit delta'
33	 45.53	0	42414..43241	+	275	154684551	yaaT	RBAM_000410	-	YaaT
34	 41.39	-1	43256..43615	+	119	154684552	yabA	RBAM_000420	-	DNA replication intiation control protein YabA
35	 44.22	0	43676..44419	+	247	154684553	yabB	RBAM_000430	-	YabB
36	 44.33	0	44406..44705	+	99	154684554	yazA	RBAM_000440	-	GIY-YIG nuclease superfamily protein
37	 45.69	0	44680..45561	+	293	154684555	yabC	RBAM_000450	-	YabC
38	 38.95	-1	45611..45895	-	94	154684556	abrB	RBAM_000460	-	hypothetical protein
39	 44.43	0	46385..48376	+	663	154684557	metS	RBAM_000470	-	methionyl-tRNA synthetase
40	 44.62	0	48449..49219	+	256	154684558	yabD	RBAM_000480	-	YabD
41	 43.83	0	49318..50679	+	453	154684559	yabE	RBAM_000490	-	hypothetical protein
42	 49.47	0	50814..51377	+	187	154684560	rnmV	RBAM_000500	-	RnmV
43	 46.26	0	51367..52248	+	293	154684561	ksgA	RBAM_000510	-	dimethyladenosine transferase
44	 45.43	0	52421..53296	+	291	154684562	yabG	RBAM_000520	-	YabG
45	 41.76	0	53508..53768	+	86	154684563	veg	RBAM_000530	-	hypothetical protein
46	 51.32	+1	53931..54119	+	62	154684564	sspF	RBAM_000540	-	SspF
47	 50.11	0	54263..55132	+	289	154684565	ispE	RBAM_000550	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
48	 44.76	0	55188..56045	+	285	154684566	purR	RBAM_000560	-	purine operon repressor
49	 46.19	0	56042..56422	+	126	154684567	yabJ	RBAM_000570	-	YabJ
50	 45.58	0	56618..56911	+	97	154684568	spoVG	RBAM_000580	-	regulatory protein SpoVG
51	 47.63	0	57103..58473	+	456	154684569	gcaD	RBAM_000590	-	GcaD
52	 45.70	0	58495..59448	+	317	154684570	prs	RBAM_000600	-	ribose-phosphate pyrophosphokinase
53	 46.14	0	59533..60141	+	202	154684571	ctc	RBAM_000610	-	50S ribosomal protein L25/general stress protein Ctc
54	 43.74	0	60226..60792	+	188	154684572	spoVC	RBAM_000620	-	peptidyl-tRNA hydrolase
55	 43.29	0	60854..61084	+	76	154684573	yabK	RBAM_000630	-	YabK
56	 47.88	0	61154..64687	+	1177	154684574	mfd	RBAM_000640	-	hypothetical protein
57	 45.81	0	64824..65360	+	178	154684575	spoVT	RBAM_000650	-	SpoVT
58	 50.16	0	65529..67109	+	526	154684576	yabM	RBAM_000660	-	YabM
59	 46.34	0	67099..68574	+	491	154684577	yabN	RBAM_000670	-	YabN
60	 45.21	0	68576..68836	+	86	154684578	yabO	RBAM_000680	-	YabO
61	 39.27	-1	68915..69217	+	100	154684579	yabP	RBAM_000690	-	YabP
62	 41.98	0	69214..69849	+	211	154684580	yabQ	RBAM_000700	-	YabQ
63	 41.80	0	69867..70244	+	125	154684581	divIC	RBAM_000710	-	DivIC
64	 39.79	-1	70325..70711	+	128	154684582	yabR	RBAM_000720	-	hypothetical protein
65	 46.95	0	71237..73726	+	829	154684583	spoIIE	RBAM_000750	-	SpoIIE
66	 49.19	0	73794..74531	+	245	154684584	yabS	RBAM_000760	-	YabS
67	 48.10	0	74497..75498	+	333	154684585	yabT	RBAM_000770	-	YabT
68	 45.17	0	75603..77021	+	472	154684586	yacA	RBAM_000780	-	YacA
69	 41.11	-1	77018..77557	+	179	154684587	hprT	RBAM_000790	-	HprT
70	 48.23	0	77655..79574	+	639	154684588	ftsH	RBAM_000800	-	hypothetical protein
71	 46.98	0	79723..80499	+	258	154684589	yacB	RBAM_000810	-	pantothenate kinase
72	 44.86	0	80510..81385	+	291	154684590	yacC	RBAM_000820	-	Hsp33-like chaperonin
73	 42.54	0	81431..82321	+	296	154684591	yacD	RBAM_000830	-	YacD
74	 49.08	0	82397..83323	+	308	154684592	cysK	RBAM_000840	-	hypothetical protein
75	 48.23	0	83488..84903	+	471	154684593	pabB	RBAM_000850	-	PabB
76	 47.96	0	84919..85506	+	195	154684594	pabA	RBAM_000860	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
77	 48.47	0	85503..86387	+	294	154684595	pabC	RBAM_000870	-	4-amino-4-deoxychorismate lyase
78	 50.23	0	86368..87225	+	285	154684596	sul	RBAM_000880	-	Sul
79	 47.38	0	87218..87580	+	120	154684597	folA	RBAM_000890	-	hypothetical protein
80	 47.02	0	87577..88080	+	167	154684598	folK	RBAM_000900	-	hypothetical protein
81	 47.50	0	88263..89264	+	333	154684599	yacF	RBAM_000910	-	YacF
82	 45.93	0	89354..90853	+	499	154684600	lysS	RBAM_000920	-	lysyl-tRNA synthetase
83	 35.91	-2	102172..102636	+	154	154684601	ctsR	RBAM_001080	-	hypothetical protein
84	 41.76	0	102650..103207	+	185	154684602	mcsA	RBAM_001090	-	McsA
85	 43.68	0	103207..104298	+	363	154684603	mcsB	RBAM_001100	-	ATP:guanido phosphotransferase
86	 47.68	0	104295..106727	+	810	154684604	clpC	RBAM_001110	-	ClpC
87	 49.42	0	106822..108201	+	459	154684605	radA	RBAM_001120	-	DNA repair protein RadA
88	 43.95	0	108205..109287	+	360	154684606	yacK	RBAM_001130	-	DNA integrity scanning protein DisA
89	 42.33	0	109401..110501	+	366	154684607	yacL	RBAM_001140	-	YacL
90	 49.36	0	110514..111212	+	232	154684608	yacM	RBAM_001150	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
91	 47.80	0	111205..111681	+	158	154684609	yacN	RBAM_001160	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
92	 46.42	0	111773..113224	+	483	154684610	gltX	RBAM_001170	-	glutamyl-tRNA synthetase
93	 46.79	0	113535..114188	+	217	154684611	cysE	RBAM_001180	-	hypothetical protein
94	 46.04	0	114185..115585	+	466	154684612	cysS	RBAM_001190	-	cysteinyl-tRNA synthetase
95	 45.14	0	115590..116021	+	143	154684613	yazC	RBAM_001200	-	YazC
96	 50.53	0	116005..116754	+	249	154684614	yacO	RBAM_001210	-	YacO
97	 48.15	0	116761..117273	+	170	154684615	yacP	RBAM_001220	-	YacP
98	 39.42	-1	117336..117992	+	218	154684616	sigH	RBAM_001230	-	RNA polymerase factor sigma-70
99	 39.33	-1	118078..118227	+	49	154684617	rpmGB	RBAM_001240	-	50S ribosomal protein L33
100	 35.00	-2	118260..118439	+	59	154684618	secE	RBAM_001250	-	preprotein translocase subunit SecE
46.32	MEAN

4.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.