IslandPath Analysis: Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.30   STD DEV: 5.52
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601, complete genome - 1..4581797
4078 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.55	0	229..294	+	21	197361213	thrL	SSPA0001	-	thr operon leader peptide
2	 56.15	0	376..2838	+	820	197361214	-	SSPA0002	-	aspartokinase I/homoserine dehydrogenase I
3	 57.96	+1	2840..3769	+	309	197361215	-	SSPA0003	-	homoserine kinase
4	 56.02	0	3773..5059	+	428	197361216	-	SSPA0004	-	threonine synthase
5	 50.39	0	5153..5926	-	257	197361217	-	SSPA0005	-	hypothetical protein
6	 55.42	0	6005..7435	-	476	197361218	-	SSPA0005a	-	Putative amino-acid transport protein
7	 53.98	0	7704..8657	+	317	197361219	-	SSPA0006	-	transaldolase B
8	 55.84	0	8768..9358	+	196	197361220	-	SSPA0007	-	molybdopterin biosynthesis Mog protein
9	 53.97	0	9415..9981	-	188	197361221	-	SSPA0008	-	hypothetical protein
10	 54.34	0	10131..10844	-	237	197361222	-	SSPA0009	-	hypothetical protein
11	 49.38	0	10880..11284	-	134	197361223	-	SSPA0010	-	hypothetical protein
12	 52.79	0	11634..13550	+	638	197361224	-	SSPA0011	-	DnaK protein (heat shock protein 70)
13	 53.63	0	13636..14763	+	375	197361225	-	SSPA0012	-	DnaJ protein
14	 40.72	-2	15047..15994	+	315	197361226	-	SSPA0013	-	putative regulatory protein
15	 40.29	-2	16121..16465	+	114	197361227	-	SSPA0014	-	hypothetical protein
16	 50.75	0	16526..17059	-	177	197361228	-	SSPA0015	-	hypothetical protein
17	 37.84	-2	17076..17519	-	147	197361229	-	SSPA0016	-	hypothetical protein
18	 54.11	0	20031..23087	+	1018	197361230	-	SSPA0017	-	putative hydroxymethyltransferase
19	 46.10	-1	23368..24072	+	234	197361231	-	SSPA0018	-	hypothetical protein
20	 52.12	0	24502..25044	+	180	197361232	-	SSPA0019	-	fimbrial subunit
21	 50.95	0	25145..25831	+	228	197361233	-	SSPA0020	-	fimbrial chaperone
22	 54.16	0	25836..28457	+	873	197361234	-	SSPA0021	-	fimbrial usher
23	 50.40	0	28458..29465	+	335	197361235	-	SSPA0022	-	fimbrial subunit
24	 47.62	0	29466..30011	+	181	197361236	-	SSPA0023	-	fimbrial subunit
25	 54.18	0	30538..31242	+	234	197361237	-	SSPA0024	-	fimbrial chaperone
26	 54.49	0	31307..32152	+	281	197361238	-	SSPA0025	-	hypothetical protein
27	 41.67	-1	32191..32478	+	95	197361239	-	SSPA0026	-	hypothetical protein
28	 36.67	-2	32578..33027	-	149	197361240	-	SSPA0027	-	hypothetical protein
29	 38.55	-2	33397..34392	+	331	197361241	-	SSPA0028	-	putative transcriptional regulator (lysR family)
30	 35.16	-2	34409..34846	-	145	197361242	-	SSPA0029	-	putative transcription regulator
31	 45.96	-1	35369..37087	+	572	197361243	-	SSPA0030	-	possible sulfatase
32	 46.69	-1	37133..38704	-	523	197361244	-	SSPA0031	-	putative secreted 5'-nucleotidase
33	 44.23	-1	38803..39564	-	253	197361245	-	SSPA0032	-	hypothetical protein
34	 49.58	0	41732..42919	+	395	197361246	-	SSPA0033	-	possible sulfatase regulatory protein
35	 49.84	0	42944..44191	+	415	197361247	-	SSPA0034	-	hypothetical protein
36	 50.23	0	44318..46033	+	571	197361248	-	SSPA0035	-	possible sulfatase
37	 56.38	0	46196..47362	+	388	197361249	-	SSPA0036	-	Na(+)/H(+) antiporter 1
38	 50.67	0	47424..48323	+	299	197361250	-	SSPA0037	-	transcriptional activator protein NhaR
39	 54.21	0	48402..50432	-	676	197361251	-	SSPA0038	-	putative glycosyl hydrolase
40	 48.40	0	50457..51830	-	457	197361252	-	SSPA0039	-	putative transport protein
41	 46.59	-1	52286..52549	-	87	197361253	-	SSPA0040	-	30S ribosomal protein S20
42	 47.69	0	52655..52870	+	71	197361254	-	SSPA0041	-	hypothetical protein
43	 56.66	0	52878..53816	+	312	197361255	-	SSPA0042	-	riboflavin biosynthesis protein RibF
44	 54.71	0	53861..56695	+	944	197361256	-	SSPA0043	-	isoleucyl-tRNA synthetase
45	 51.70	0	56695..57195	+	166	197361257	-	SSPA0044	-	lipoprotein signal peptidase
46	 54.67	0	57350..57799	+	149	197361258	-	SSPA0045	-	probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase
47	 57.62	0	57802..58752	+	316	197361259	-	SSPA0046	-	LytB protein
48	 47.88	0	58952..60154	+	400	197361260	-	SSPA0047	-	hypothetical protein
49	 55.30	0	60170..61084	+	304	197361261	-	SSPA0048	-	putative nucleoside hydrolase (IUNH family)
50	 48.47	0	61106..61792	-	228	197361262	-	SSPA0049	-	transcriptional regulatory protein citb
51	 48.15	0	61794..63413	-	539	197361263	-	SSPA0050	-	putative transcriptional regulator
52	 64.10	+2	63548..64831	-	427	197361264	-	SSPA0051	-	oxaloacetate decarboxylase beta chain
53	 64.52	+2	64844..66610	-	588	197361265	oadA	SSPA0052	-	oxaloacetate decarboxylase alpha chain
54	 55.83	0	66626..66865	-	79	197361266	-	SSPA0054	-	oxaloacetate decarboxylase gamma chain
55	 49.52	0	67024..68364	-	446	197361267	-	SSPA0055	-	citrate-sodium symporter
56	 54.02	0	68609..69652	+	347	197361268	-	SSPA0056	-	[citrate (PRO-3S)-lyase] ligase
57	 56.46	0	69682..69975	+	97	197361269	-	SSPA0057	-	citrate lyase acyl carrier protein
58	 54.71	0	69972..70841	+	289	197361270	-	SSPA0058	-	citrate lyase beta chain
59	 55.49	0	70852..72372	+	506	197361271	-	SSPA0059	-	citrate lyase alpha chain
60	 56.16	0	72372..72923	+	183	197361272	-	SSPA0060	-	hypothetical protein
61	 54.68	0	72901..73809	+	302	197361273	-	SSPA0061	-	CitG protein
62	 56.33	0	73989..74810	+	273	197361274	-	SSPA0062	-	dihydrodipicolinate reductase
63	 55.35	0	75671..76819	+	382	197361275	-	SSPA0063	-	carbamoyl-phosphate synthase small chain
64	 59.05	+1	76838..80065	+	1075	197361276	-	SSPA0064	-	carbamoyl-phosphate synthase large chain
65	 45.45	-1	80339..80734	+	131	197361277	-	SSPA0065	-	transcriptional activator CaiF
66	 55.44	0	80812..81408	-	198	197361278	-	SSPA0066	-	carnitine operon protein CaiE
67	 55.85	0	81519..82304	-	261	197361279	-	SSPA0067	-	carnitine racemase
68	 50.26	0	82358..83911	-	517	197361280	-	SSPA0068	-	probable crotonobetaine/carnitine-CoA ligase
69	 53.86	0	83974..85191	-	405	197361281	-	SSPA0069	-	L-carnitine dehydratase
70	 52.58	0	85303..86445	-	380	197361282	-	SSPA0070	-	probable carnitine operon oxidoreductase CaiA
71	 53.62	0	86480..87997	-	505	197361283	-	SSPA0071	-	probable carnitine transporter
72	 52.14	0	88487..89257	+	256	197361284	-	SSPA0072	-	FixA protein
73	 59.24	+1	89273..90214	+	313	197361285	-	SSPA0073	-	FixB protein
74	 55.63	0	90264..91550	+	428	197361286	-	SSPA0074	-	FixC protein
75	 54.17	0	91547..91834	+	95	197361287	-	SSPA0075	-	ferredoxin like protein FixX
76	 54.14	0	91982..93322	+	446	197361288	-	SSPA0076	-	putative metabolite transport protein
77	 48.48	0	93411..93641	+	76	197361289	-	SSPA0077	-	putative lipoprotein
78	 46.57	-1	93913..94335	+	140	197361290	-	SSPA0078	-	probable secreted protein
79	 46.39	-1	94559..94849	-	96	197361291	-	SSPA0079	-	probable secreted protein
80	 36.41	-2	95059..95253	+	64	197361292	-	SSPA0080	-	hypothetical protein
81	 46.46	-1	95747..97636	+	629	197361293	-	SSPA0081	-	putative sulfatase
82	 58.24	+1	98714..100576	+	620	197361294	-	SSPA0082	-	glutathione-regulated potassium-efflux system protein KefC
83	 53.54	0	100775..101254	+	159	197361295	-	SSPA0084	-	dihydrofolate reductase type I
84	 55.83	0	101360..102208	-	282	197361296	-	SSPA0085	-	bis(5'-nucleosyl)-tetraphosphatase
85	 54.50	0	102219..102596	-	125	197361297	-	SSPA0086	-	CorD protein
86	 52.55	0	102599..103420	-	273	197361298	-	SSPA0087	-	dimethyladenosine transferase
87	 58.69	+1	103417..104406	-	329	197361299	-	SSPA0088	-	pyridoxal phosphate biosynthetic protein PdxA
88	 54.47	0	104406..105692	-	428	197361300	-	SSPA0089	-	survival protein SurA precursor
89	 52.99	0	105746..108100	-	784	197361301	-	SSPA0090	-	organic solvent tolerance protein precursor
90	 53.87	0	108354..109166	+	270	197361302	-	SSPA0091	-	DnaJ-like protein
91	 57.12	0	109261..109920	-	219	197361303	-	SSPA0092	-	ribosomal large subunit pseudouridine synthase A
92	 56.86	0	109932..112838	-	968	197361304	-	SSPA0093	-	probable ATP-dependent helicase HepA
93	 56.68	0	113012..115363	-	783	197361305	-	SSPA0094	-	DNA polymerase II
94	 46.03	-1	115703..116143	-	146	197361306	-	SSPA0095	-	putative IS element transposase
95	 48.88	0	116163..117371	+	402	197361307	-	SSPA0096	-	putative IS element transposase
96	 42.62	-1	118363..118782	+	139	197361308	-	SSPA0098	-	hypothetical protein
97	 55.17	0	118788..119483	-	231	197361309	-	SSPA0099	-	L-ribulose-5-phosphate 4-epimerase
98	 56.22	0	119624..121126	-	500	197361310	-	SSPA0100	-	L-arabinose isomerase
99	 60.64	+1	121137..122846	-	569	197361311	-	SSPA0101	-	L-ribulokinase
100	 53.66	0	123187..124032	+	281	197361312	-	SSPA0102	-	arabinose operon regulatory protein
52.30	MEAN

5.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.