IslandPathversion 1.0

IslandPath Analysis: Mesorhizobium loti MAFF303099



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.95 STD DEV: 3.53
Mesorhizobium loti MAFF303099, complete genome - 1..7036071
6743 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.89	-1	287..1084	+	265	13470331	-	mlr0002	-	hypothetical protein
2	 65.44	0	1006..2223	+	405	13470332	-	mlr0003	-	hypothetical protein
3	 60.47	0	2253..2720	-	155	13470333	-	mll0004	-	bacterioferritin
4	 65.04	0	2816..6196	+	1126	13470334	-	mlr0006	-	hypothetical protein
5	 63.40	0	6203..7456	-	417	13470335	-	mll0007	-	tyrosyl-tRNA synthetase
6	 64.06	0	7723..8490	+	255	13470336	-	mlr0009	-	hypothetical protein
7	 57.96	-1	8483..8815	+	110	13470337	-	mlr0010	-	hypothetical protein
8	 64.12	0	8856..10505	+	549	13470338	-	mlr0011	-	hypothetical protein
9	 63.81	0	10632..11366	+	244	13470339	-	mlr0012	-	hypothetical protein
10	 65.13	0	11379..12029	-	216	13470340	-	mll0013	-	transcriptional regulator
11	 61.86	0	12051..12737	-	228	13470341	-	mll0014	-	hypothetical protein
12	 66.15	0	12964..14127	+	387	13470342	-	mlr0015	-	nitrogenase cofactor synthesis protein nifS
13	 59.68	0	14316..15833	+	505	57165208	-	mlr0016	-	cysteine desulfurase activator complex subunit SufB
14	 52.82	-2	15830..16450	+	206	13470343	-	mlr0017	-	hypothetical protein
15	 61.64	0	16552..17307	+	251	13470344	-	mlr0019	-	ABC transporter ATP-binding protein
16	 64.04	0	17309..18601	+	430	13470345	-	mlr0020	-	hypothetical protein
17	 61.11	0	18713..19954	+	413	13470346	-	mlr0021	-	nifS-like aminotransferase
18	 63.95	0	19951..20355	+	134	13470347	-	mlr0023	-	hypothetical protein
19	 61.61	0	20404..20838	+	144	13470348	-	mlr0024	-	HesB-like protein
20	 63.45	0	20875..21372	-	165	13470349	-	mll0025	-	hypothetical protein
21	 64.20	0	21462..21785	+	107	13470350	-	mlr0026	-	hypothetical protein
22	 65.90	0	21787..22704	-	305	13470351	-	mll0028	-	hypothetical protein
23	 68.47	+1	22778..23722	-	314	13470352	-	mll0029	-	carbohydrate kinase
24	 63.30	0	24004..25101	+	365	13470353	recA	mlr0030	-	recombinase A
25	 65.95	0	25362..28028	+	888	13470354	alaS	mlr0032	-	alanyl-tRNA synthetase
26	 63.59	0	28039..28395	+	118	13470355	-	mlr0033	-	hypothetical protein
27	 63.80	0	28427..29053	-	208	13470356	-	mll0034	-	glutathione S-transferase III
28	 60.15	0	29133..30344	-	403	13470357	-	mll0036	-	isocitrate dehydrogenase
29	 62.65	0	30662..31606	-	314	13470358	-	mll0037	-	outer membrane protein B (OmpB)
30	 66.01	0	32191..33102	+	303	13470359	-	mlr0038	-	RNA methyltransferase
31	 64.74	0	33053..33883	+	276	13470360	-	mlr0039	-	glutamate racemase
32	 65.44	0	33966..35348	-	460	57165209	-	mll0040	-	ribonuclease
33	 57.67	-1	35512..35700	+	62	13470361	-	msr0042	-	hypothetical protein
34	 60.54	0	35797..36057	-	86	13470362	-	msl0044	-	hypothetical protein
35	 61.65	0	36362..36979	+	205	13470363	rpsD	mlr0045	-	30S ribosomal protein S4
36	 62.50	0	37184..37999	+	271	13470364	-	mlr0047	-	hypothetical protein
37	 65.82	0	37989..38816	+	275	13470365	-	mlr0048	-	monophosphatase-like protein
38	 62.99	0	38893..39300	+	135	57165210	-	msr0050	-	hypothetical protein
39	 62.62	0	39311..40495	-	394	13470366	-	mll0051	-	bicyclomycin resistance protein
40	 57.74	-1	40724..41059	-	111	13470367	-	mll0053	-	hypothetical protein
41	 61.97	0	41212..41445	-	77	13470368	-	msl0055	-	hypothetical protein
42	 61.82	0	41568..41918	-	116	13470369	-	mll0056	-	hypothetical protein
43	 65.59	0	42089..44320	-	743	13470370	-	mll0057	-	phosphoribosylformylglycinamidine synthase II
44	 59.26	-1	44471..44740	+	89	13470371	-	msr0058	-	hypothetical protein
45	 65.89	0	44756..46168	-	470	13470372	-	mll0059	-	transcriptional regulator
46	 61.51	0	46262..46513	+	83	13470373	-	msr0060	-	hypothetical protein
47	 63.27	0	46523..46816	-	97	13470374	-	mll0061	-	hypothetical protein
48	 63.89	0	47167..47490	-	107	13470375	-	mll0062	-	hypothetical protein
49	 62.46	0	47571..48236	-	221	13470376	-	mll0063	-	glutathione transferase
50	 64.13	0	48307..48975	-	222	13470377	-	mll0065	-	phosphoribosylformylglycinamidine synthase subunit I
51	 59.92	0	49247..49498	-	83	13470378	-	msl0067	-	phosphoribosylformylglycinamidine synthase subunit PurS
52	 60.75	0	49533..50327	-	264	13470379	-	mll0069	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
53	 60.12	0	50603..50923	+	106	13470380	-	mlr0071	-	hypothetical protein
54	 63.31	0	51088..51861	+	257	13470381	-	mlr0073	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
55	 60.36	0	51900..53024	-	374	13470382	-	mll0074	-	hypothetical protein
56	 63.75	0	53249..53797	-	182	13470383	-	mll0076	-	hypothetical protein
57	 65.44	0	54043..54855	+	270	13470384	-	mlr0078	-	hypothetical protein
58	 63.00	0	54935..56242	-	435	13470385	-	mll0079	-	adenylosuccinate lyase
59	 62.62	0	56401..56919	-	172	13470386	-	mll0080	-	hypothetical protein
60	 63.56	0	56916..57590	-	224	13470387	-	mll0081	-	hypothetical protein
61	 58.82	-1	57770..58024	+	84	13470388	-	msr0083	-	hypothetical protein
62	 67.45	+1	58034..59059	-	341	13470389	-	mll0085	-	hypothetical protein
63	 67.04	+1	59059..60126	-	355	13470390	-	mll0086	-	amino acid binding protein
64	 61.36	0	60308..60835	+	175	13470391	-	mlr0087	-	monooxygenase
65	 63.76	0	60832..61761	+	309	13470392	-	mlr0088	-	hypothetical protein
66	 65.48	0	61766..63031	+	421	13470393	-	mlr0089	-	hypothetical protein
67	 64.31	0	63082..63420	+	112	13470394	-	mlr0091	-	hypothetical protein
68	 64.77	0	63427..64164	+	245	13470395	-	mlr0092	-	hypothetical protein
69	 66.73	+1	64231..65841	+	536	13470396	-	mlr0093	-	hypothetical protein
70	 61.78	0	65874..66773	+	299	13470397	-	mlr0094	-	hypothetical protein
71	 59.83	0	66795..67847	-	350	13470398	-	mll0095	-	hypothetical protein
72	 60.30	0	67898..68494	+	198	13470399	-	mlr0096	-	hypothetical protein
73	 59.14	-1	68666..68758	+	30	13470400	-	msr0098	-	hypothetical protein
74	 68.09	+1	69421..69561	+	46	13470401	-	msr0099	-	hypothetical protein
75	 61.61	0	69673..70740	+	355	13470402	-	mlr0100	-	oxidoreductase
76	 62.68	0	70772..72049	+	425	13470403	-	mlr0102	-	aminotransferase
77	 64.04	0	72065..73093	-	342	13470404	-	mll0103	-	acetylpolyamine aminohydrolase
78	 59.77	0	73090..73611	-	173	13470405	-	mll0104	-	acetyltransferase
79	 62.10	0	73615..74118	-	167	13470406	-	mll0105	-	hypothetical protein
80	 63.87	0	74139..75068	-	309	13470407	-	mll0106	-	hypothetical protein
81	 65.08	0	75072..76457	-	461	13470408	-	mll0107	-	aminotransferase
82	 64.41	0	76459..78006	-	515	13470409	-	mll0108	-	hypothetical protein
83	 60.92	0	78156..78503	+	115	13470410	-	mlr0109	-	hypothetical protein
84	 59.79	0	78525..79106	+	193	13470411	-	mlr0110	-	hypothetical protein
85	 64.24	0	79141..80169	-	342	13470412	-	mll0111	-	oxidoreductase
86	 63.41	0	80276..80674	+	132	13470413	-	mlr0112	-	hypothetical protein
87	 65.04	0	80792..81037	+	81	13470414	-	msr0114	-	hypothetical protein
88	 65.23	0	81044..81949	-	301	13470415	-	mll0115	-	hypothetical protein
89	 65.66	0	82193..82987	+	264	13470416	-	mlr0116	-	integral membrane lipid kinase-like protein
90	 60.92	0	83132..83740	+	202	13470417	-	mlr0118	-	hypothetical protein
91	 62.88	0	83867..84658	+	263	13470418	-	mlr0120	-	hypothetical protein
92	 66.51	+1	84642..85283	-	213	13470419	-	mll0121	-	hypothetical protein
93	 63.05	0	85308..86357	-	349	13470420	-	mll0122	-	hypothetical protein
94	 55.39	-2	86439..86642	-	67	13470421	-	msl0124	-	hypothetical protein
95	 65.62	0	86650..87603	+	317	13470422	-	mlr0125	-	lysozyme
96	 56.32	-1	87751..88011	+	86	13470423	-	mlr0127	-	hypothetical protein
97	 63.02	0	88242..88625	-	127	13470424	-	mll0128	-	hypothetical protein
98	 61.95	0	88658..89569	-	303	13470425	-	mll0129	-	transcriptional activator AmpR
99	 59.26	-1	89576..89818	-	80	13470426	-	msl0131	-	hypothetical protein
100	 63.04	0	89882..90487	+	201	13470427	-	mlr0132	-	hypothetical protein
62.95	MEAN

3.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.