IslandPath Analysis: Coxiella burnetii RSA 331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.03   STD DEV: 4.81
Coxiella burnetii RSA 331, complete genome - 1..2016427
1930 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.69	0	140..1495	+	451	161830473	dnaA	COXBURSA331_A0001	-	chromosomal replication initiator protein DnaA
2	 43.78	0	1639..2748	+	369	161831398	dnaN	COXBURSA331_A0002	-	DNA polymerase III, beta subunit
3	 43.11	0	2753..3826	+	357	161830866	recF	COXBURSA331_A0003	-	DNA replication and repair protein RecF
4	 39.58	0	4005..4148	-	47	161831267	-	COXBURSA331_A0004	-	hypothetical protein
5	 46.93	0	4128..6554	+	808	161830408	gyrB	COXBURSA331_A0005	-	DNA gyrase, B subunit
6	 49.02	+1	6780..7799	+	339	161831254	-	COXBURSA331_A0007	-	transposase for insertion sequence element IS1111A
7	 42.86	0	7796..8068	-	90	161830165	-	COXBURSA331_A0006	-	hypothetical protein
8	 41.26	0	8215..9021	-	268	161831413	hemD	COXBURSA331_A0008	-	uroporphyrinogen-III synthase
9	 41.19	0	9011..9328	-	105	161831543	-	COXBURSA331_A0009	-	hypothetical protein
10	 39.03	0	9338..10039	-	233	161831551	aroD	COXBURSA331_A0010	-	3-dehydroquinate dehydratase, type I
11	 43.94	0	10039..10962	-	307	161831110	hemC	COXBURSA331_A0011	-	porphobilinogen deaminase
12	 41.09	0	10946..11848	-	300	161830543	-	COXBURSA331_A0012	-	acyltransferase family protein
13	 44.58	0	11884..12381	-	165	161831338	-	COXBURSA331_A0013	-	hypothetical protein
14	 42.03	0	12601..13083	-	160	161830428	-	COXBURSA331_A0014	-	hypothetical protein
15	 38.69	0	13159..13569	+	136	161829738	-	COXBURSA331_A0015	-	chorismate mutase family protein
16	 44.67	0	13586..14176	+	196	161831538	tdk	COXBURSA331_A0016	-	thymidine kinase
17	 39.17	0	14177..14296	+	39	161830348	-	COXBURSA331_A0017	-	hypothetical protein
18	 45.86	0	14317..15657	+	446	161831122	-	COXBURSA331_A0018	-	major facilitator family transporter
19	 40.77	0	15638..16996	+	452	161831130	-	COXBURSA331_A0019	-	major facilitator family transporter
20	 39.98	0	17008..17835	+	275	161831015	-	COXBURSA331_A0020	-	hypothetical protein
21	 40.38	0	17816..18454	+	212	161830023	-	COXBURSA331_A0021	-	hypothetical protein
22	 34.34	-1	18493..18789	-	98	161831550	-	COXBURSA331_A0022	-	hypothetical protein
23	 42.06	0	20560..21762	+	400	161829805	-	COXBURSA331_A0024	-	hypothetical protein
24	 43.89	0	21955..23271	+	438	161831327	-	COXBURSA331_A0025	-	major facilitator family transporter
25	 42.33	0	23688..24665	+	325	161830879	-	COXBURSA331_A0026	-	hypothetical protein
26	 44.96	0	25561..26274	-	237	161831441	-	COXBURSA331_A0028	-	hypothetical protein
27	 46.14	0	26271..28433	-	720	161829860	uvrD	COXBURSA331_A0029	-	DNA-dependent helicase II
28	 47.50	0	28463..28582	+	39	161831081	-	COXBURSA331_A0030	-	hypothetical protein
29	 37.96	-1	28817..29746	+	309	161830734	-	COXBURSA331_A0031	-	hypothetical protein
30	 45.05	0	30176..30619	+	147	161829965	-	COXBURSA331_A0032	-	hypothetical protein
31	 44.91	0	30565..31212	+	215	161830612	-	COXBURSA331_A0033	-	hypothetical protein
32	 44.54	0	31244..32314	+	356	161830810	trpS	COXBURSA331_A0034	-	tryptophanyl-tRNA synthetase
33	 43.77	0	32499..34826	+	775	161831447	metE	COXBURSA331_A0035	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
34	 42.84	0	34844..35716	+	290	161829730	metF	COXBURSA331_A0036	-	5,10-methylenetetrahydrofolate reductase
35	 43.52	0	35795..35902	+	35	161831565	-	COXBURSA331_A0037	-	hypothetical protein
36	 42.87	0	36026..37807	-	593	161830272	-	COXBURSA331_A0038	-	chitinase domain-containing protein
37	 40.00	0	37878..38162	-	94	161830819	-	COXBURSA331_A0039	-	hypothetical protein
38	 36.29	-1	40136..40507	-	123	161830478	-	COXBURSA331_A0041	-	sensory box protein
39	 43.04	0	40497..41825	-	442	161831332	-	COXBURSA331_A0042	-	HlyD family type I secretion membrane fusion protein
40	 41.36	0	43932..44654	-	240	161830606	-	COXBURSA331_A0044	-	putative protein export ABC transporter, ATP-binding protein
41	 41.74	0	44679..45677	-	332	161829887	-	COXBURSA331_A0045	-	hypothetical protein
42	 53.11	+2	45676..45852	+	58	161830711	-	COXBURSA331_A0046	-	hypothetical protein
43	 55.17	+2	45951..46472	-	173	161830337	-	COXBURSA331_A0047	-	hypothetical protein
44	 56.37	+2	46484..46687	+	67	161830129	-	COXBURSA331_A0049	-	hypothetical protein
45	 48.37	+1	46646..47137	-	163	161830620	-	COXBURSA331_A0048	-	hypothetical protein
46	 42.74	0	47308..47424	-	38	161831125	-	COXBURSA331_A0050	-	hypothetical protein
47	 45.21	0	48334..49638	-	434	161830022	ahcY	COXBURSA331_A0052	-	S-adenosyl-L-homocysteine hydrolase
48	 52.20	+1	49652..50833	-	393	161831401	metK	COXBURSA331_A0053	-	S-adenosylmethionine synthetase
49	 44.55	0	50971..51603	+	210	161830390	-	COXBURSA331_A0054	-	hypothetical protein
50	 42.03	0	51697..52443	+	248	161830772	-	COXBURSA331_A0056	-	hypothetical protein
51	 35.42	-1	52652..52939	+	95	161831230	-	COXBURSA331_A0057	-	hypothetical protein
52	 46.13	0	53162..54325	-	387	161830314	-	COXBURSA331_A0058	-	putative O-succinylhomoserine (thiol)-lyase
53	 45.74	0	54404..55354	-	316	161830931	-	COXBURSA331_A0059	-	putative cystathionine beta-synthase
54	 41.46	0	55432..55677	+	81	161829984	-	COXBURSA331_A0060	-	hypothetical protein
55	 39.59	0	57269..58531	+	420	161831059	-	COXBURSA331_A0062	-	putative ATPase
56	 40.98	0	58611..60023	+	470	161831197	-	COXBURSA331_A0063	-	amino acid antiporter
57	 46.67	0	60078..60212	+	44	161830389	-	COXBURSA331_A0064	-	hypothetical protein
58	 43.85	0	60428..62053	-	541	161830271	ubiB	COXBURSA331_A0065	-	2-polyprenylphenol 6-hydroxylase
59	 41.14	0	62050..62664	-	204	161830100	-	COXBURSA331_A0066	-	hypothetical protein
60	 46.61	0	62664..63416	-	250	161831469	ubiE	COXBURSA331_A0067	-	ubiquinone/menaquinone biosynthesis methyltransferase ubiE
61	 37.24	-1	63496..64083	-	195	161830957	-	COXBURSA331_A0068	-	hypothetical protein
62	 35.83	-1	65772..66251	-	159	161831173	-	COXBURSA331_A0071	-	hypothetical protein
63	 44.54	0	66479..67576	+	365	161830759	-	COXBURSA331_A0073	-	hypothetical protein
64	 47.62	0	67530..68873	-	447	161830731	hslU	COXBURSA331_A0072	-	ATP-dependent protease ATP-binding subunit
65	 49.27	+1	68952..69497	-	181	161831128	hslV	COXBURSA331_A0074	-	ATP-dependent protease peptidase subunit
66	 50.88	+1	69757..69927	-	56	161831301	-	COXBURSA331_A0075	-	hypothetical protein
67	 37.36	-1	70068..71384	-	438	161830028	-	COXBURSA331_A0076	-	hypothetical protein
68	 46.96	0	71399..73159	-	586	161830885	argS	COXBURSA331_A0077	-	arginyl-tRNA synthetase
69	 35.69	-1	73323..74510	+	395	161831337	-	COXBURSA331_A0078	-	hypothetical protein
70	 48.92	+1	74557..75294	+	245	161829818	-	COXBURSA331_A0079	-	transcriptional regulatory protein
71	 43.58	0	75291..76568	+	425	161830232	-	COXBURSA331_A0080	-	sensor histidine kinase
72	 42.05	0	76576..77631	+	351	161829953	-	COXBURSA331_A0081	-	heptosyltransferase family protein
73	 49.24	+1	77709..77840	-	43	161830649	-	COXBURSA331_A0082	-	hypothetical protein
74	 51.52	+1	78292..78852	-	186	161830974	-	COXBURSA331_A0083	-	Sua5/YciO/YrdC/YwlC family protein
75	 47.90	+1	78855..79355	-	166	161831623	purE	COXBURSA331_A0084	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
76	 50.98	+1	79397..79549	-	50	161830004	-	COXBURSA331_A0085	-	hypothetical protein
77	 43.08	0	79563..81860	-	765	161830529	topA	COXBURSA331_A0086	-	DNA topoisomerase I
78	 42.14	0	81863..82339	-	158	161830825	-	COXBURSA331_A0087	-	hypothetical protein
79	 50.73	+1	82339..83229	-	296	161831372	dprA	COXBURSA331_A0088	-	DNA protecting protein DprA
80	 45.30	0	83260..83376	+	38	161830760	-	COXBURSA331_A0089	-	hypothetical protein
81	 46.88	0	83453..84397	+	314	161831370	fmt	COXBURSA331_A0090	-	methionyl-tRNA formyltransferase
82	 43.60	0	84410..84964	+	184	161830190	-	COXBURSA331_A0092	-	D,D-heptose 1,7-bisphosphate phosphatase
83	 46.88	0	84940..85227	-	95	161830672	-	COXBURSA331_A0091	-	acylphosphatase
84	 37.50	-1	85230..85349	-	39	161831617	-	COXBURSA331_A0093	-	hypothetical protein
85	 43.97	0	85447..86226	+	259	161831101	-	COXBURSA331_A0094	-	hypothetical protein
86	 40.95	0	86223..86708	+	161	161829963	folA	COXBURSA331_A0096	-	dihydrofolate reductase
87	 45.89	0	86888..87763	-	291	161830465	apaH	COXBURSA331_A0097	-	diadenosine tetraphosphatase
88	 45.44	0	87776..88717	-	313	161831390	sppA	COXBURSA331_A0098	-	signal peptide peptidase SppA, 36K type
89	 40.53	0	88781..89266	-	161	161830852	-	COXBURSA331_A0099	-	hypothetical protein
90	 28.21	-2	89343..89459	+	38	161830294	-	COXBURSA331_A0100	-	hypothetical protein
91	 39.20	0	89524..89898	-	124	161831274	-	COXBURSA331_A0101	-	hypothetical protein
92	 47.36	0	90067..90501	-	144	161830827	-	COXBURSA331_A0102	-	universal stress protein family protein
93	 41.18	0	90614..91390	-	258	161830385	ksgA	COXBURSA331_A0103	-	dimethyladenosine transferase
94	 47.19	0	91542..92465	-	307	161829776	pdxA	COXBURSA331_A0104	-	4-hydroxythreonine-4-phosphate dehydrogenase
95	 40.37	0	92465..93430	-	321	161830191	-	COXBURSA331_A0105	-	putative peptidyl-prolyl cis-trans isomerase surA
96	 44.36	0	93436..96048	-	870	161829772	ostA	COXBURSA331_A0106	-	organic solvent tolerance protein
97	 40.61	0	96138..97127	+	329	161831058	-	COXBURSA331_A0107	-	phosphotransferase enzyme family protein
98	 40.91	0	97133..97792	+	219	161829992	-	COXBURSA331_A0109	-	nucleotidyl transferase family protein
99	 46.79	0	97772..98440	-	222	161830625	-	COXBURSA331_A0108	-	phospholipase/carboxylesterase family protein
100	 39.72	0	98598..98738	+	46	161831486	-	COXBURSA331_A0110	-	hypothetical protein
43.03	MEAN

4.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.