IslandPath Analysis: Chlorobaculum parvum NCIB 8327



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.24   STD DEV: 5.58
Chlorobaculum parvum NCIB 8327, complete genome - 1..2289249
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.12	0	167..1648	+	493	193211677	-	Cpar_0001	-	chromosomal replication initiator protein DnaA
2	 51.29	0	1934..3058	+	374	193211678	-	Cpar_0002	-	DNA polymerase III, beta subunit
3	 45.80	-1	3074..4180	+	368	193211679	-	Cpar_0003	-	DNA replication and repair protein RecF
4	 42.18	-2	4183..4476	+	97	193211680	-	Cpar_0004	-	hypothetical protein
5	 48.74	-1	4603..5829	-	408	193211681	-	Cpar_0005	-	beta-lactamase domain protein
6	 51.13	0	5905..8298	-	797	193211682	-	Cpar_0006	-	DNA polymerase B region
7	 54.88	0	8350..10215	-	621	193211683	-	Cpar_0007	-	glucose inhibited division protein A
8	 48.87	-1	10583..11026	-	147	193211684	-	Cpar_0008	-	protein tyrosine phosphatase
9	 55.36	0	11807..12151	+	114	193211685	-	Cpar_0009	-	cytochrome c class I
10	 57.73	0	12167..13453	+	428	193211686	-	Cpar_0010	-	Flavocytochrome c sulphide dehydrogenase flavin-binding
11	 55.83	0	13665..15464	+	599	193211687	-	Cpar_0011	-	protein-export membrane protein SecD
12	 54.80	0	15483..16409	+	308	193211688	-	Cpar_0012	-	protein-export membrane protein SecF
13	 55.45	0	16654..17973	+	439	193211689	-	Cpar_0013	-	PpiC-type peptidyl-prolyl cis-trans isomerase
14	 58.59	0	17962..19905	-	647	193211690	-	Cpar_0014	-	DNA gyrase, B subunit
15	 59.49	0	19980..20369	-	129	193211691	-	Cpar_0015	-	protein of unknown function UPF0102
16	 60.84	0	20380..20997	-	205	193211692	-	Cpar_0016	-	Ribonuclease H
17	 59.30	0	21280..22962	+	560	193211693	-	Cpar_0017	-	ribonuclease, Rne/Rng family
18	 61.38	0	22988..23857	+	289	193211694	-	Cpar_0018	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
19	 59.04	0	23854..25596	+	580	193211695	-	Cpar_0019	-	carboxyl-terminal protease
20	 56.80	0	25626..26324	-	232	193211696	-	Cpar_0020	-	hypothetical protein
21	 59.38	0	26324..27475	-	383	193211697	-	Cpar_0021	-	geranylgeranyl reductase
22	 60.34	0	27496..28965	-	489	193211698	-	Cpar_0022	-	glycyl-tRNA synthetase
23	 46.99	-1	29103..29915	-	270	193211699	-	Cpar_0023	-	hypothetical protein
24	 59.19	0	30605..31072	+	155	193211700	-	Cpar_0025	-	Rhodanese domain protein
25	 63.94	+1	31122..32480	+	452	193211701	-	Cpar_0026	-	cobyrinic acid a,c-diamide synthase
26	 55.95	0	32810..33145	+	111	193211702	-	Cpar_0027	-	sulfur relay protein, TusE/DsrC/DsvC family
27	 59.75	0	33218..34474	+	418	193211703	-	Cpar_0028	-	sulfite reductase, dissimilatory-type alpha subunit
28	 61.94	+1	34583..35662	+	359	193211704	-	Cpar_0029	-	sulfite reductase, dissimilatory-type beta subunit
29	 61.20	0	35871..37607	+	578	193211705	-	Cpar_0030	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
30	 58.68	0	37653..38015	+	120	193211706	-	Cpar_0031	-	hypothetical protein
31	 58.73	0	38241..38681	+	146	193211707	-	Cpar_0032	-	hypothetical protein
32	 58.43	0	38678..39673	+	331	193211708	-	Cpar_0033	-	Nitrate reductase gamma subunit
33	 58.59	0	39678..41324	+	548	193211709	-	Cpar_0034	-	DsrK protein
34	 60.28	0	41317..41739	+	140	193211710	-	Cpar_0035	-	cytochrome DsrJ
35	 62.84	+1	41736..42518	+	260	193211711	-	Cpar_0036	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
36	 62.16	+1	42528..43682	+	384	193211712	-	Cpar_0037	-	Polysulphide reductase NrfD
37	 56.49	0	43836..44297	+	153	193211713	-	Cpar_0038	-	siroheme synthase
38	 60.87	0	44314..45693	+	459	193211714	-	Cpar_0039	-	uroporphyrin-III C-methyltransferase
39	 55.27	0	45975..46676	+	233	193211715	-	Cpar_0040	-	phosphoribulokinase/uridine kinase
40	 47.94	-1	46916..47620	+	234	193211716	-	Cpar_0041	-	putative PAS/PAC sensor protein
41	 55.65	0	47934..48269	-	111	193211717	-	Cpar_0042	-	ATP-dependent Clp protease adaptor protein ClpS
42	 59.61	0	48309..49271	-	320	193211718	-	Cpar_0043	-	Muramoyltetrapeptide carboxypeptidase
43	 53.79	0	49326..49589	-	87	193211719	-	Cpar_0044	-	H+transporting two-sector ATPase delta/epsilon subunit
44	 56.23	0	49596..50984	-	462	193211720	-	Cpar_0045	-	ATP synthase F1, beta subunit
45	 55.43	0	51369..51911	+	180	193211721	-	Cpar_0046	-	Redoxin domain protein
46	 60.77	0	52062..53927	+	621	193211722	-	Cpar_0047	-	Phosphoenolpyruvate carboxykinase (GTP)
47	 59.38	0	54427..55839	+	470	193211723	-	Cpar_0048	-	membrane protein involved in aromatic hydrocarbon degradation
48	 51.64	0	55955..56167	-	70	193211724	-	Cpar_0049	-	protein of unknown function DUF1458
49	 58.41	0	56543..57499	+	318	193211725	-	Cpar_0050	-	protein of unknown function DUF81
50	 57.59	0	57496..57969	+	157	193211726	-	Cpar_0051	-	hypothetical protein
51	 60.17	0	58553..59875	+	440	193211727	-	Cpar_0052	-	major facilitator superfamily MFS_1
52	 60.14	0	60012..60455	+	147	193211728	-	Cpar_0053	-	methionine-R-sulfoxide reductase
53	 59.24	0	60681..62282	-	533	193211729	-	Cpar_0054	-	drug resistance transporter, EmrB/QacA subfamily
54	 61.53	0	62282..63274	-	330	193211730	-	Cpar_0055	-	secretion protein HlyD family protein
55	 59.83	0	63281..63763	-	160	193211731	-	Cpar_0056	-	UspA domain protein
56	 62.36	+1	63760..65106	-	448	193211732	-	Cpar_0057	-	outer membrane efflux protein
57	 63.20	+1	65447..67552	+	701	193211733	-	Cpar_0058	-	transcriptional regulator, NifA subfamily, Fis Family
58	 56.53	0	67653..68471	+	272	193211734	-	Cpar_0059	-	hypothetical protein
59	 56.72	0	68547..69752	-	401	193211735	-	Cpar_0060	-	arsenite-activated ATPase ArsA
60	 57.89	0	70214..71671	+	485	193211736	-	Cpar_0061	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
61	 54.09	0	71844..72002	+	52	193211737	-	Cpar_0062	-	hypothetical protein
62	 52.87	0	72211..72855	+	214	193211738	-	Cpar_0063	-	hypothetical protein
63	 58.52	0	72852..73256	+	134	193211739	-	Cpar_0064	-	hypothetical protein
64	 63.23	+1	73296..74312	-	338	193211740	-	Cpar_0065	-	Alpha/beta hydrolase fold-3 domain protein
65	 62.81	+1	74326..74844	-	172	193211741	-	Cpar_0066	-	nitroreductase
66	 59.11	0	74841..75872	-	343	193211742	-	Cpar_0067	-	TrkA-N domain protein
67	 56.21	0	75909..76520	-	203	193211743	-	Cpar_0068	-	hypothetical protein
68	 62.10	+1	76713..77786	-	357	193211744	-	Cpar_0069	-	peptide chain release factor 1
69	 54.92	0	77809..79170	-	453	193211745	-	Cpar_0070	-	membrane-associated zinc metalloprotease
70	 61.50	0	79337..80497	-	386	193211746	-	Cpar_0071	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
71	 59.50	0	80900..81178	-	92	193211747	-	Cpar_0072	-	acylphosphatase
72	 57.34	0	81184..83295	-	703	193211748	-	Cpar_0073	-	ATP-dependent metalloprotease FtsH
73	 59.64	0	83606..84430	+	274	193211749	-	Cpar_0074	-	orotidine 5'-phosphate decarboxylase
74	 59.57	0	84522..86366	+	614	193211750	-	Cpar_0075	-	glucosamine/fructose-6-phosphate aminotransferase, isomerizing
75	 50.91	0	88617..89276	-	219	193211751	-	Cpar_0076	-	CRISPR-associated protein Cas1
76	 56.65	0	89396..89974	+	192	193211752	-	Cpar_0077	-	hypothetical protein
77	 52.46	0	90205..92598	+	797	193211753	-	Cpar_0078	-	CRISPR-associated protein, Csm1 family
78	 38.82	-2	92598..93071	+	157	193211754	-	Cpar_0079	-	CRISPR-associated protein, Csm2 family
79	 47.93	-1	93087..93956	+	289	193211755	-	Cpar_0080	-	CRISPR-associated RAMP protein, Csm3 family
80	 50.95	0	93970..95070	+	366	193211756	-	Cpar_0081	-	CRISPR-associated RAMP protein, Csm4 family
81	 36.51	-2	95072..95386	+	104	193211757	-	Cpar_0082	-	CRISPR-associated RAMP protein, Csm5 family
82	 41.57	-2	95428..96921	+	497	193211758	-	Cpar_0083	-	CRISPR-associated RAMP protein, Csm5 family
83	 39.32	-2	96918..98453	+	511	193211759	-	Cpar_0084	-	hypothetical protein
84	 53.54	0	98480..99271	+	263	193211760	-	Cpar_0085	-	CRISPR-associated protein Cas6
85	 56.05	0	99650..100591	+	313	193211761	-	Cpar_0086	-	domain of unknown function DUF1731
86	 52.38	0	100673..100945	-	90	193211762	-	Cpar_0087	-	RNP-1 like RNA-binding protein
87	 57.32	0	101356..102693	+	445	193211763	-	Cpar_0088	-	ammonium transporter
88	 54.97	0	102705..103046	+	113	193211764	-	Cpar_0089	-	nitrogen regulatory protein P-II
89	 57.47	0	103165..103686	-	173	193211765	-	Cpar_0090	-	Tetratricopeptide TPR_2 repeat protein
90	 56.65	0	104118..104846	+	242	193211766	-	Cpar_0091	-	chromosome segregation and condensation protein ScpA
91	 62.23	+1	104867..106150	+	427	193211767	-	Cpar_0092	-	hypothetical protein
92	 62.39	+1	106147..106590	+	147	193211768	-	Cpar_0093	-	protein of unknown function UPF0079
93	 63.13	+1	106600..107277	+	225	193211769	-	Cpar_0094	-	peptidase M22 glycoprotease
94	 53.65	0	107466..107903	+	145	193211770	-	Cpar_0095	-	iojap-like protein
95	 58.52	0	108004..110484	+	826	193211771	-	Cpar_0096	-	DNA gyrase, A subunit
96	 56.48	0	110595..112292	+	565	193211772	-	Cpar_0097	-	CTP synthase
97	 51.41	0	118364..118894	+	176	193211773	-	Cpar_0098	-	hypothetical protein
98	 55.76	0	119185..120330	+	381	193211774	-	Cpar_0099	-	hypothetical protein
99	 59.63	0	120480..122468	+	662	193211775	-	Cpar_0100	-	protein of unknown function DUF224 cysteine-rich region domain protein
100	 59.54	0	122496..123674	+	392	193211776	-	Cpar_0101	-	peptidase M24
56.24	MEAN

5.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.