IslandPath Analysis: Neisseria meningitidis 053442



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.53   STD DEV: 7.05
Neisseria meningitidis 053442, complete genome - 1..2153416
2020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.97	0	7..498	-	163	161869019	-	NMCC_0001	-	acetyltransferase
2	 51.01	0	502..897	-	131	161869020	-	NMCC_0002	-	putative periplasmic protein
3	 55.20	0	918..2312	-	464	161869021	gltX	NMCC_0003	-	glutamyl-tRNA synthetase
4	 55.86	0	2428..3084	-	218	161869022	-	NMCC_0004	-	periplasmic protein
5	 51.69	0	3081..3434	-	117	161869023	arsC	NMCC_0005	-	arsenate reductase
6	 52.80	0	3557..4039	+	160	161869024	-	NMCC_0006	-	thioredoxin-related transmembrane protein
7	 55.88	0	4162..4884	+	240	161869025	ftsE	NMCC_0007	-	ABC transporter ATP-binding protein
8	 55.01	0	4881..5798	+	305	161869026	ftsX	NMCC_0008	-	ABC transporter integral membrane protein
9	 50.18	0	5859..6137	+	92	161869027	-	NMCC_0009	-	BolA/YrbA family protein
10	 57.68	0	6205..7383	-	392	161869028	pgk	NMCC_0010	-	phosphoglycerate kinase
11	 51.55	0	7458..8423	-	321	161869029	-	NMCC_0011	-	transposase for IS1655
12	 58.53	0	8547..9800	-	417	161869030	murA	NMCC_0012	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13	 50.15	0	10163..11137	-	324	161869031	-	NMCC_0014	-	transmembrane transport protein
14	 54.67	0	11170..11619	-	149	161869032	-	NMCC_0015	-	integral membrane protein
15	 59.51	+1	11660..12931	-	423	161869033	kdtA	NMCC_0016	-	3-deoxy-D-manno-octulosonic-acid transferase
16	 54.07	0	12994..14406	-	470	161869034	gnd	NMCC_0017	-	6-phosphogluconate dehydrogenase
17	 51.44	0	15405..15647	+	80	161869035	-	NMCC_0018	-	hypothetical protein
18	 51.43	0	15712..15921	+	69	161869036	-	NMCC_0019	-	hypothetical protein
19	 53.57	0	16085..17008	-	307	161869037	lpxC	NMCC_0020	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
20	 42.06	-1	17372..17497	+	41	161869038	-	NMCC_0021	-	hypothetical protein
21	 50.76	0	17938..18069	+	43	161869039	-	NMCC_0022	-	hypothetical protein
22	 55.64	0	18148..18528	-	126	161869040	pilE	NMCC_0023	-	fimbrial protein precursor (pilin)
23	 51.54	0	19136..19492	-	118	161869041	-	NMCC_0024	-	pilS cassette
24	 52.07	0	19532..20401	-	289	161869042	-	NMCC_0025	-	large pilS cassette
25	 52.08	0	20573..20908	-	111	161869043	-	NMCC_0026	-	pilS cassette
26	 52.89	0	20948..21310	-	120	161869044	-	NMCC_0027	-	pilS cassette
27	 55.15	0	21339..21668	-	109	161869045	-	NMCC_0028	-	peptidyl-prolyl cis-trans isomerase
28	 51.80	0	21847..22068	-	73	161869046	-	NMCC_0029	-	hypothetical protein
29	 54.72	0	22191..23144	+	317	161869047	hprA	NMCC_0030	-	glycerate dehydrogenase
30	 54.14	0	23222..25384	-	720	161869048	metG	NMCC_0031	-	methionyl-tRNA synthetase
31	 57.53	0	25395..27233	-	612	161869049	glmS	NMCC_0032	-	D-fructose-6-phosphate amidotransferase
32	 49.23	0	27515..28036	+	173	161869050	-	NMCC_0033	-	lipoprotein
33	 58.88	+1	28454..29788	-	444	161869051	-	NMCC_0034	-	membrane-bound lytic murein transglycosylase
34	 55.00	0	29994..30833	+	279	161869052	-	NMCC_0035	-	integral membrane protein
35	 53.64	0	30830..31996	+	388	161869053	-	NMCC_0036	-	hypothetical protein
36	 58.11	0	32260..33627	+	455	161869054	-	NMCC_0037	-	periplasmic protein
37	 52.73	0	33598..33927	-	109	161869055	phnA	NMCC_0038	-	PhnA protein
38	 57.77	0	34004..35374	-	456	161869056	glmU	NMCC_0039	-	UDP-N-acetylglucosamine pyrophosphorylase
39	 53.48	0	35429..35701	-	90	161869057	-	NMCC_0040	-	lipoprotein
40	 54.34	0	35694..36407	-	237	161869058	-	NMCC_0041	-	hydrolase, putative
41	 59.58	+1	36466..37467	+	333	161869059	-	NMCC_0042	-	thiamin-binding periplasmic protein
42	 53.47	0	37561..38409	+	282	161869060	-	NMCC_0043	-	integral membrane protein
43	 61.11	+1	38435..38920	+	161	161869061	-	NMCC_0044	-	competence/damage inducible protein CinA
44	 54.75	0	39022..40590	-	522	161869062	-	NMCC_0045	-	peptide methionine sulfoxide reductase
45	 56.16	0	40735..42000	+	421	161869063	-	NMCC_0046	-	signal recognition particle protein
46	 39.65	-1	42941..43225	+	94	161869064	-	NMCC_0047	-	putative endonuclease
47	 49.07	0	43766..43981	-	71	161869065	-	NMCC_0048	-	hypothetical protein
48	 49.65	0	44229..47267	+	1012	161869066	pilC2	NMCC_0049	-	pilus-associated protein
49	 59.88	+1	48750..51002	-	750	161869067	-	NMCC_0050	-	integral membrane protein
50	 55.91	0	51018..52244	-	408	161869068	pilU	NMCC_0051	-	twitching motility protein PilU
51	 57.09	0	52407..53450	-	347	161869069	pilT	NMCC_0052	-	twitching motility protein PilT
52	 55.90	0	53570..54256	+	228	161869070	-	NMCC_0053	-	hypothetical protein
53	 51.85	0	54286..54663	+	125	161869071	-	NMCC_0054	-	lipoprotein
54	 53.81	0	54742..55503	+	253	161869072	proC	NMCC_0055	-	pyrroline-5-carboxylate reductase
55	 50.12	0	55650..56066	+	138	161869073	dksA	NMCC_0056	-	DnaK suppressor protein
56	 44.44	-1	56196..56384	-	62	161869074	-	NMCC_0057	-	hypothetical protein
57	 54.11	0	61894..62331	+	145	161869075	-	NMCC_0064	-	DNA transport competence protein
58	 42.14	-1	62360..62518	+	52	161869076	-	NMCC_0065	-	hypothetical protein
59	 39.51	-1	62392..62553	-	53	161869077	-	NMCC_0066	-	hypothetical protein
60	 53.21	0	62600..63721	+	373	161869078	dnaJ	NMCC_0067	-	chaperone protein dnaJ
61	 54.68	0	63917..65935	+	672	161869079	-	NMCC_0068	-	integral membrane protein
62	 55.56	0	65979..66536	-	185	161869080	rfbC	NMCC_0069	-	dTDP-4-dehydrorhamnose 3,5-epimerase
63	 51.73	0	66590..67600	-	336	161869081	rfbA	NMCC_0070	-	glucose-1-phosphate thymidylyltransferase
64	 54.03	0	67519..68586	-	355	161869082	rfbB	NMCC_0071	-	dTDP-D-glucose 4,6-dehydratase
65	 51.27	0	68702..69721	-	339	161869083	galE	NMCC_0072	-	UDP-glucose 4-epimerase
66	 33.33	-2	70104..71060	+	318	161869084	-	NMCC_0073	-	hypothetical protein
67	 28.78	-2	71111..72493	-	460	161869085	-	NMCC_0074	-	hypothetical protein
68	 30.91	-2	72522..73841	-	439	161869086	siaD	NMCC_0075	-	alpha-2,8 polysialyltransferase
69	 40.95	-1	74080..75129	-	349	161869087	siaC	NMCC_0076	-	polysialic acid capsule biosynthesis protein SiaC
70	 40.17	-1	75130..75816	-	228	161869088	siaB	NMCC_0077	-	polysialic acid capsule biosynthesis protein SiaB
71	 37.84	-1	75820..76974	-	384	161869089	synX	NMCC_0078	-	polysialic acid capsule biosynthesis protein SynX
72	 46.85	0	77093..78268	+	391	161869090	ctrA	NMCC_0079	-	capsule polysaccharide export outer membrane protein
73	 47.08	0	78283..79446	+	387	161869091	ctrB	NMCC_0080	-	capsule polysaccharide export inner-membrane protein
74	 42.84	-1	79518..80243	+	241	161869092	ctrC	NMCC_0081	-	capsule polysaccharide export inner-membrane protein
75	 47.16	0	80240..80890	+	216	161869093	ctrD	NMCC_0082	-	capsule polysaccharide export ATP-binding protein
76	 59.42	+1	80951..83227	+	758	161869094	tex	NMCC_0083	-	transcriptional accessory protein Tex, putative
77	 36.81	-2	84253..84597	+	114	161869095	-	NMCC_0085	-	site-specific DNA methylase
78	 54.05	0	84655..85296	+	213	161869096	galE2	NMCC_0086	-	UDP-glucose 4-epimerase
79	 54.03	0	85412..86479	+	355	161869097	rfbB2	NMCC_0087	-	dTDP-D-glucose 4,6-dehydratase
80	 51.73	0	86398..87408	+	336	161869098	rfbA2	NMCC_0088	-	glucose-1-phosphate thymidylyltransferase
81	 54.81	0	87462..88001	+	179	161869099	rfbC2	NMCC_0089	-	dTDP-D-glucose 4,6-dehydratase
82	 51.68	0	88025..90139	+	704	161869100	lipA	NMCC_0090	-	capsule polysaccharide modification protein
83	 48.97	0	90276..91535	+	419	161869101	lipB	NMCC_0091	-	capsule polysaccharide modification protein
84	 57.61	0	92028..93308	+	426	161869102	-	NMCC_0092	-	hypothetical protein
85	 53.42	0	93526..94740	+	404	161869103	gltS	NMCC_0093	-	sodium/glutamate symport carrier protein
86	 57.52	0	94839..95855	+	338	161869104	-	NMCC_0094	-	lipoprotein
87	 53.54	0	95866..96063	+	65	161869105	-	NMCC_0095	-	hypothetical protein
88	 49.06	0	96072..96230	+	52	161869106	-	NMCC_0096	-	hypothetical protein
89	 55.06	0	96471..98141	-	556	161869107	-	NMCC_0097	-	outer membrane protein P1, putative
90	 60.29	+1	98175..99647	-	490	161869108	pykA	NMCC_0098	-	pyruvate kinase
91	 57.40	0	100868..102022	+	384	161869109	-	NMCC_0100	-	GTPase ObgE
92	 39.33	-1	102105..103154	+	349	161869110	-	NMCC_0101	-	ATP-binding protein
93	 48.24	0	103164..105263	+	699	161869111	cysS	NMCC_0102	-	cysteinyl-tRNA synthetase
94	 53.46	0	105505..106125	+	206	161869112	exoA	NMCC_0103	-	exodeoxyribonuclease
95	 57.63	0	106467..106997	+	176	161869113	-	NMCC_0104	-	hypothetical protein
96	 56.81	0	107226..108341	-	371	161869114	asd	NMCC_0105	-	aspartate-semialdehyde dehydrogenase
97	 51.37	0	108670..109251	+	193	161869115	-	NMCC_0106	-	integral membrane protein
98	 58.37	0	109313..110071	-	252	161869116	folD	NMCC_0107	-	methylenetetrahydrofolate dehydrogenase/cyclohydrolase
99	 58.58	0	110807..111313	+	168	161869117	-	NMCC_0111	-	transferase
100	 60.31	+1	111310..113088	+	592	161869118	birA	NMCC_0112	-	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase
51.53	MEAN

7.05	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.