IslandPath Analysis: Dehalococcoides sp. BAV1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.53   STD DEV: 3.61
Dehalococcoides sp. BAV1, complete genome - 1..1341892
1371 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 49.51	0	245..1579	+	444	147668653	-	DehaBAV1_0001	-	chromosomal replication initiator protein DnaA
2	 50.75	0	1910..3184	+	424	147668654	obgE	DehaBAV1_0002	-	GTPase ObgE
3	 48.94	0	3172..3786	+	204	147668655	-	DehaBAV1_0003	-	nicotinate-nucleotide adenylyltransferase
4	 50.86	0	3868..5796	-	642	147668656	-	DehaBAV1_0004	-	DNA gyrase subunit B
5	 51.30	+1	6001..8187	-	728	147668657	-	DehaBAV1_0005	-	(p)ppGpp synthetase I, SpoT/RelA
6	 51.47	+1	8315..9571	+	418	147668658	hisS	DehaBAV1_0006	-	histidyl-tRNA synthetase
7	 48.20	0	9568..10731	+	387	147668659	-	DehaBAV1_0007	-	saccharopine dehydrogenase
8	 52.90	+1	10728..11330	-	200	147668660	-	DehaBAV1_0008	-	acyl-phosphate glycerol-3-phosphate acyltransferase
9	 49.19	0	11384..12304	-	306	147668661	-	DehaBAV1_0009	-	branched-chain amino acid aminotransferase
10	 51.32	+1	12458..13630	-	390	147668662	-	DehaBAV1_0010	-	DNA-directed DNA polymerase
11	 51.32	+1	13630..13818	-	62	147668663	-	DehaBAV1_0011	-	hypothetical protein
12	 48.46	0	13889..14701	-	270	147668664	-	DehaBAV1_0012	-	orotidine 5'-phosphate decarboxylase
13	 47.13	0	14849..15544	+	231	147668665	-	DehaBAV1_0013	-	hypothetical protein
14	 45.66	0	15583..16377	+	264	147668666	-	DehaBAV1_0014	-	hypothetical protein
15	 51.86	+1	16423..17739	+	438	147668667	-	DehaBAV1_0015	-	FolC bifunctional protein
16	 44.91	0	17722..17937	-	71	147668668	-	DehaBAV1_0016	-	hypothetical protein
17	 44.70	0	17951..18214	-	87	147668669	-	DehaBAV1_0017	-	hypothetical protein
18	 52.16	+1	18517..18978	+	153	147668670	-	DehaBAV1_0018	-	D-tyrosyl-tRNA deacylase
19	 44.99	0	19030..19458	+	142	147668671	-	DehaBAV1_0019	-	ferric uptake regulator family protein
20	 47.54	0	19849..20601	-	250	147668672	-	DehaBAV1_0020	-	hypothetical protein
21	 47.29	0	20704..21090	+	128	147668673	-	DehaBAV1_0021	-	hypothetical protein
22	 46.81	0	21172..21312	-	46	147668674	-	DehaBAV1_0022	-	hypothetical protein
23	 50.48	0	21369..23759	-	796	147668675	-	DehaBAV1_0023	-	DNA internalization-related competence protein ComEC/Rec2
24	 49.10	0	23756..24256	-	166	147668676	-	DehaBAV1_0024	-	DNA uptake protein and related DNA-binding protein-like protein
25	 50.45	0	24434..25099	-	221	147668677	-	DehaBAV1_0025	-	TrkA domain-containing protein
26	 49.14	0	25104..25508	-	134	147668678	-	DehaBAV1_0026	-	TrkA domain-containing protein
27	 44.99	0	25512..25940	-	142	147668679	-	DehaBAV1_0027	-	UspA domain-containing protein
28	 50.62	0	26017..27462	-	481	147668680	-	DehaBAV1_0028	-	cation transporter
29	 49.60	0	27466..28830	-	454	147668681	trkA	DehaBAV1_0029	-	potassium transporter peripheral membrane component
30	 46.35	0	29308..29937	+	209	147668682	-	DehaBAV1_0030	-	hypothetical protein
31	 50.00	0	29930..30931	+	333	147668683	-	DehaBAV1_0031	-	phosphate transporter
32	 49.51	0	30928..31545	-	205	147668684	-	DehaBAV1_0032	-	guanylate kinase
33	 47.42	0	31526..31816	-	96	147668685	-	DehaBAV1_0033	-	hypothetical protein
34	 50.77	0	32025..32873	+	282	147668686	-	DehaBAV1_0034	-	ferredoxin--NADP(+) reductase subunit alpha
35	 51.00	0	32866..34263	+	465	147668687	-	DehaBAV1_0035	-	putative oxidoreductase
36	 46.38	0	34260..34466	-	68	147668688	-	DehaBAV1_0036	-	hypothetical protein
37	 48.31	0	34582..35115	-	177	147668689	-	DehaBAV1_0037	-	hypothetical protein
38	 51.23	+1	35186..35794	-	202	147668690	-	DehaBAV1_0038	-	methyltransferase type 11
39	 47.69	0	35805..35999	-	64	147668691	-	DehaBAV1_0039	-	hypothetical protein
40	 51.88	+1	36141..36512	+	123	147668692	-	DehaBAV1_0040	-	hypothetical protein
41	 52.13	+1	36648..37094	+	148	147668693	-	DehaBAV1_0041	-	C_GCAxxG_C_C family protein
42	 50.82	0	37091..38194	-	367	147668694	-	DehaBAV1_0042	-	translation-associated GTPase
43	 46.50	0	38216..38458	-	80	147668695	-	DehaBAV1_0043	-	hypothetical protein
44	 49.85	0	38586..39614	+	342	147668696	-	DehaBAV1_0044	-	DNA polymerase III, delta subunit
45	 48.53	0	39616..40227	+	203	147668697	-	DehaBAV1_0045	-	hypothetical protein
46	 53.17	+1	40262..41269	+	335	147668698	-	DehaBAV1_0046	-	glucokinase
47	 52.45	+1	41385..44000	+	871	147668699	-	DehaBAV1_0047	-	alanyl-tRNA synthetase
48	 47.01	0	44047..44448	+	133	147668700	-	DehaBAV1_0048	-	Holliday junction resolvase YqgF
49	 51.48	+1	44470..45648	+	392	147668701	-	DehaBAV1_0049	-	queuine tRNA-ribosyltransferase
50	 50.31	0	45743..46885	+	380	147668702	-	DehaBAV1_0050	-	iron-containing alcohol dehydrogenase
51	 51.35	+1	50498..52972	+	824	147668703	-	DehaBAV1_0051	-	ATPase
52	 51.76	+1	53418..54812	+	464	147668704	-	DehaBAV1_0052	-	DNA repair protein RadA
53	 50.58	0	54799..55482	+	227	147668705	-	DehaBAV1_0053	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
54	 52.74	+1	55488..55961	+	157	147668706	-	DehaBAV1_0054	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
55	 48.03	0	55965..57338	+	457	147668707	-	DehaBAV1_0055	-	cysteinyl-tRNA synthetase
56	 44.04	0	57557..58555	+	332	147668708	-	DehaBAV1_0056	-	phage integrase family protein
57	 40.60	-1	58582..59448	-	288	147668709	-	DehaBAV1_0057	-	hypothetical protein
58	 36.13	-2	59840..60553	-	237	147668710	-	DehaBAV1_0058	-	hypothetical protein
59	 34.41	-2	60568..60753	-	61	147668711	-	DehaBAV1_0059	-	XRE family transcriptional regulator
60	 37.39	-2	60861..61205	+	114	147668712	-	DehaBAV1_0060	-	hypothetical protein
61	 41.21	-1	61286..66757	-	1823	147668713	-	DehaBAV1_0061	-	metallophosphoesterase
62	 44.40	0	67261..68091	-	276	147668714	-	DehaBAV1_0062	-	hypothetical protein
63	 49.66	0	68088..68522	-	144	147668715	-	DehaBAV1_0063	-	hypothetical protein
64	 44.15	0	68535..68987	-	150	147668716	-	DehaBAV1_0064	-	hypothetical protein
65	 50.33	0	68993..69451	-	152	147668717	-	DehaBAV1_0065	-	hypothetical protein
66	 49.56	0	69766..70215	-	149	147668718	-	DehaBAV1_0066	-	hypothetical protein
67	 46.21	0	70367..70630	+	87	147668719	-	DehaBAV1_0067	-	hypothetical protein
68	 46.23	0	70591..71598	+	335	147668720	-	DehaBAV1_0068	-	hypothetical protein
69	 43.76	-1	71595..73340	+	581	147668721	-	DehaBAV1_0069	-	hypothetical protein
70	 44.35	0	73340..73684	+	114	147668722	-	DehaBAV1_0070	-	hypothetical protein
71	 43.83	-1	74225..74767	-	180	147668723	-	DehaBAV1_0071	-	hypothetical protein
72	 38.05	-2	75294..75611	-	105	147668724	-	DehaBAV1_0072	-	hypothetical protein
73	 48.58	0	75785..76420	-	211	147668725	-	DehaBAV1_0073	-	resolvase domain-containing protein
74	 48.89	0	76799..79402	-	867	147668726	-	DehaBAV1_0074	-	hypothetical protein
75	 48.21	0	79846..80181	-	111	147668727	-	DehaBAV1_0075	-	hypothetical protein
76	 50.18	0	80178..80450	-	90	147668728	-	DehaBAV1_0076	-	hypothetical protein
77	 40.71	-1	81298..81921	+	207	147668729	-	DehaBAV1_0077	-	phage repressor like transcriptional regulator
78	 45.21	0	82056..83015	+	319	147668730	-	DehaBAV1_0078	-	phage integrase family protein
79	 39.19	-2	83602..84609	-	335	147668731	-	DehaBAV1_0079	-	DNA-cytosine methyltransferase
80	 34.39	-2	84613..85461	-	282	147668732	-	DehaBAV1_0080	-	Type II site-specific deoxyribonuclease
81	 53.33	+1	85925..86209	+	94	147668733	-	DehaBAV1_0082	-	transposase IS3/IS911 family protein
82	 49.94	0	86347..87135	+	262	147668734	-	DehaBAV1_0083	-	integrase catalytic subunit
83	 45.40	0	87298..88449	-	383	147668735	-	DehaBAV1_0084	-	hypothetical protein
84	 42.49	-1	89033..89578	-	181	147668736	-	DehaBAV1_0085	-	hypothetical protein
85	 43.43	-1	89582..89908	-	108	147668737	-	DehaBAV1_0086	-	hypothetical protein
86	 42.14	-1	89909..90487	-	192	147668738	-	DehaBAV1_0087	-	hypothetical protein
87	 44.76	0	91006..92598	-	530	147668739	-	DehaBAV1_0088	-	hypothetical protein
88	 49.40	0	92675..93010	-	111	147668740	-	DehaBAV1_0089	-	hypothetical protein
89	 47.33	0	93066..93458	-	130	147668741	-	DehaBAV1_0090	-	single-strand binding protein/primosomal replication protein n
90	 43.12	-1	93499..93825	-	108	147668742	-	DehaBAV1_0091	-	hypothetical protein
91	 42.50	-1	93922..94554	+	210	147668743	-	DehaBAV1_0092	-	XRE family transcriptional regulator
92	 36.18	-2	94704..95195	+	163	147668744	-	DehaBAV1_0093	-	hypothetical protein
93	 31.94	-2	95226..96302	+	358	147668745	-	DehaBAV1_0094	-	hypothetical protein
94	 29.44	-2	96364..97416	+	350	147668746	-	DehaBAV1_0095	-	hypothetical protein
95	 45.29	0	97959..98744	-	261	147668747	-	DehaBAV1_0096	-	hypothetical protein
96	 44.50	0	98940..99575	-	211	147668748	-	DehaBAV1_0097	-	resolvase domain-containing protein
97	 45.10	0	99572..100531	-	319	147668749	-	DehaBAV1_0098	-	hypothetical protein
98	 41.27	-1	100651..100776	+	41	147668750	-	DehaBAV1_0099	-	hypothetical protein
99	 41.00	-1	100821..101420	-	199	147668751	-	DehaBAV1_0100	-	hypothetical protein
100	 50.93	0	101503..101718	+	71	147668752	-	DehaBAV1_0101	-	XRE family transcriptional regulator
47.53	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.