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Shigella boydii Sb227, complete genome - 1..4519823 4134 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 52.90 0 335..2797 + 820 82542619 thrA SBO_0001 - bifunctional aspartokinase I/homeserine dehydrogenase I 2 55.73 0 2799..3731 + 310 82542620 thrB SBO_0002 - homoserine kinase 3 53.22 0 3732..5018 + 428 82542621 thrC SBO_0003 - threonine synthase 4 53.87 0 5232..5528 + 98 82542622 - SBO_0004 - hypothetical protein 5 49.68 0 5681..6457 - 258 82542623 yaaA SBO_0005 - hypothetical protein 6 49.35 0 6639..6869 - 76 82542624 - SBO_0006 - putative IS1 encoded protein 7 52.98 0 6962..7465 + 167 82542625 insB SBO_0007 - IS1 ORF2 8 51.15 0 9013..9966 + 317 82542626 talB SBO_0009 - transaldolase B 9 53.57 0 10081..10668 + 195 82542627 mogA SBO_0010 - molybdenum cofactor biosynthesis protein 10 52.20 0 10703..11269 - 188 82542628 yaaH SBO_0011 - hypothetical protein 11 50.56 0 11418..12131 - 237 82542629 - SBO_0012 - hypothetical protein 12 53.17 0 12356..12859 - 167 82542630 insB SBO_0013 - IS1 ORF2 13 46.85 -1 12934..13155 + 73 82542631 - SBO_0014 - putative IS1 encoded protein 14 51.17 0 13301..15217 + 638 82542632 dnaK SBO_0015 - molecular chaperone DnaK 15 55.26 0 15306..16436 + 376 82542633 dnaJ SBO_0016 - chaperone protein DnaJ 16 51.43 0 16540..16749 - 69 82542634 gef SBO_0017 - Gef 17 51.67 0 17278..18444 + 388 82542635 nhaA SBO_0018 - pH-dependent sodium/proton antiporter 18 47.90 0 18504..19409 + 301 82542636 nhaR SBO_0019 - transcriptional activator NhaR 19 49.71 0 19907..20077 - 56 82542637 - SBO_0020 - putative IS1 encoded protein 20 52.98 0 20170..20673 + 167 82542638 insB SBO_0021 - IS1 ORF2 21 46.59 -1 20907..21170 - 87 82542639 rpsT SBO_0022 - 30S ribosomal protein S20 22 48.86 0 21273..21491 + 72 82542640 - SBO_0023 - hypothetical protein 23 53.08 0 21499..22440 + 313 82542641 ribF SBO_0024 - bifunctional riboflavin kinase/FMN adenylyltransferase 24 55.73 0 22483..25299 + 938 82542642 ileS SBO_0025 - isoleucyl-tRNA synthetase 25 53.33 0 25299..25793 + 164 82542643 lspA SBO_0026 - lipoprotein signal peptidase 26 54.00 0 25862..26311 + 149 82542644 slpA SBO_0027 - FKBX-type 16KD peptidyl-prolyl cis-trans isomerase 27 55.10 0 26313..27263 + 316 82542645 ispH SBO_0028 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 28 56.07 +1 27329..28243 + 304 82542646 yaaF SBO_0029 - ribonucleoside hydrolase RihC 29 53.89 0 28410..29231 + 273 82542647 dapB SBO_0030 - dihydrodipicolinate reductase 30 53.26 0 29686..30834 + 382 82542648 carA SBO_0031 - carbamoyl phosphate synthase small subunit 31 56.24 +1 30852..34073 + 1073 82542649 carB SBO_0032 - carbamoyl phosphate synthase large subunit 32 53.17 0 34194..34697 - 167 82542650 insB SBO_0033 - IS1 ORF2 33 52.75 0 34811..36226 + 471 161984994 yaaU SBO_0034 - putative transport protein 34 54.24 0 36308..36838 + 176 82542652 yabF SBO_0035 - glutathione-regulated potassium-efflux system ancillary protein KefF 35 55.77 0 36831..38693 + 620 82542653 kefC SBO_0036 - glutathione-regulated potassium-efflux system protein KefC 36 53.33 0 38885..39364 + 159 82542654 folA SBO_0037 - dihydrofolate reductase 37 55.63 0 39442..40284 - 280 82542655 apaH SBO_0038 - diadenosine tetraphosphatase 38 51.85 0 40291..40668 - 125 82542656 apaG SBO_0039 - ApaG 39 53.28 0 40671..41492 - 273 82542657 ksgA SBO_0040 - dimethyladenosine transferase 40 56.46 +1 41489..42478 - 329 82542658 pdxA SBO_0041 - 4-hydroxythreonine-4-phosphate dehydrogenase 41 54.08 0 42478..43764 - 428 82542659 surA SBO_0042 - peptidyl-prolyl cis-trans isomerase SurA 42 51.46 0 43817..46171 - 784 82542660 imp SBO_0043 - organic solvent tolerance protein 43 52.94 0 46426..47241 + 271 82542661 djlA SBO_0044 - DNA-J like membrane chaperone protein 44 54.24 0 47358..48017 - 219 82542662 yabO SBO_0045 - 23S rRNA/tRNA pseudouridine synthase A 45 55.11 0 48029..50935 - 968 82542663 hepA SBO_0046 - ATP-dependent helicase HepA 46 55.40 0 51099..53450 - 783 82542664 polB SBO_0047 - DNA polymerase II 47 54.89 0 53525..54220 - 231 82542665 araD SBO_0048 - L-ribulose-5-phosphate 4-epimerase 48 55.16 0 54420..55922 - 500 82542666 araA SBO_0049 - L-arabinose isomerase 49 57.97 +1 55933..57633 - 566 82542667 araB SBO_0050 - ribulokinase 50 52.67 0 57972..58850 + 292 82542668 araC SBO_0051 - DNA-binding transcriptional regulator AraC 51 54.64 0 58936..59700 + 254 82542669 yabI SBO_0052 - hypothetical protein 52 57.37 +1 59813..60511 - 232 82542670 thiQ SBO_0053 - thiamine transporter ATP-binding subunit 53 58.04 +1 60495..62105 - 536 82542671 thiP SBO_0054 - thiamine transporter membrane protein 54 52.95 0 62081..63064 - 327 82542672 tbpA SBO_0055 - thiamine transporter substrate binding subunit 55 55.13 0 63228..64883 - 551 82542673 yabN SBO_0056 - transcriptional regulator SgrR 56 48.11 0 65205..66287 + 360 82542674 yabM SBO_0057 - putative transport protein 57 51.82 0 66336..66941 - 201 82542675 leuD SBO_0058 - isopropylmalate isomerase small subunit 58 55.46 0 66952..68352 - 466 82542676 leuC SBO_0059 - isopropylmalate isomerase large subunit 59 55.40 0 68355..69446 - 363 161984993 leuB SBO_0060 - 3-isopropylmalate dehydrogenase 60 52.99 0 69446..71017 - 523 82542678 leuA SBO_0061 - 2-isopropylmalate synthase 61 47.13 -1 71110..71196 - 28 82542679 leuL SBO_0062 - leu operon leader peptide 62 53.17 0 71769..72272 + 167 82542680 insB SBO_0063 - IS1 ORF2 63 52.52 0 73633..75357 + 574 82542681 ilvI SBO_0065 - acetolactate synthase 3 catalytic subunit 64 50.20 0 75360..75851 + 163 82542682 ilvH SBO_0066 - acetolactate synthase 3 regulatory subunit 65 47.13 -1 75863..75949 + 28 82542683 fruL SBO_0067 - fruR leader peptide 66 54.93 0 76031..77035 + 334 82542684 fruR SBO_0068 - DNA-binding transcriptional regulator FruR 67 51.63 0 77637..78095 + 152 82542685 yabB SBO_0069 - cell division protein MraZ 68 55.20 0 78097..79038 + 313 82542686 mraW SBO_0070 - S-adenosyl-methyltransferase MraW 69 50.55 0 79035..79400 + 121 82542687 ftsL SBO_0071 - cell division protein FtsL 70 53.76 0 79416..81182 + 588 82542688 ftsI SBO_0072 - penicillin-binding protein 3 71 56.32 +1 81169..82656 + 495 82542689 murE SBO_0073 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 72 55.11 0 82653..84011 + 452 82542690 murF SBO_0074 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 73 53.28 0 84005..85087 + 360 82542691 mraY SBO_0075 - phospho-N-acetylmuramoyl-pentapeptide-transferase 74 55.35 0 85090..86406 + 438 82542692 murD SBO_0076 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 75 53.25 0 86406..87650 + 414 82542693 ftsW SBO_0077 - cell division protein FtsW 76 56.18 +1 87647..88714 + 355 82542694 murG SBO_0078 - N-acetylglucosaminyl transferase 77 54.54 0 88768..90243 + 491 82542695 murC SBO_0079 - UDP-N-acetylmuramate--L-alanine ligase 78 51.68 0 90236..91156 + 306 82542696 ddl SBO_0080 - D-alanine--D-alanine ligase 79 53.43 0 91158..91988 + 276 82542697 ftsQ SBO_0081 - cell division protein FtsQ 80 52.10 0 91985..93247 + 420 82542698 ftsA SBO_0082 - cell division protein FtsA 81 53.19 0 93269..94567 - 432 82542700 - SBO_0084 - hypothetical protein 82 50.76 0 94560..95477 + 305 82542699 lpxC SBO_0083 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 83 53.80 0 95708..96220 + 170 161984992 yacA SBO_0085 - SecA regulator SecM 84 52.33 0 96282..98987 + 901 82542702 secA SBO_0086 - preprotein translocase subunit SecA 85 49.74 0 99047..99436 + 129 82542703 mutT SBO_0087 - nucleoside triphosphate pyrophosphohydrolase 86 55.56 0 99458..99592 - 44 82542704 - SBO_0088 - hypothetical protein 87 51.52 0 99543..99740 - 65 82542705 yacG SBO_0089 - zinc-binding protein 88 51.21 0 99750..100493 - 247 82542706 yacF SBO_0090 - hypothetical protein 89 52.82 0 100493..101113 - 206 82542707 coaE SBO_0091 - dephospho-CoA kinase 90 51.15 0 101338..102381 + 347 82542708 guaC SBO_0092 - guanosine 5'-monophosphate oxidoreductase 91 49.07 0 102301..102408 - 35 82542709 - SBO_0093 - hypothetical protein 92 52.87 0 102416..103618 - 400 82542710 hofC SBO_0094 - type IV pilin biogenesis protein 93 53.37 0 105502..106005 + 167 82542711 insB SBO_0096 - IS1 ORF2 94 53.13 0 106412..107305 - 297 82542712 nadC SBO_0098 - quinolinate phosphoribosyltransferase 95 54.17 0 107393..107944 + 183 82542713 ampD SBO_0099 - N-acetyl-anhydromuranmyl-L-alanine amidase 96 52.05 0 107941..108795 + 284 82542714 ampE SBO_0100 - regulatory protein AmpE 97 52.47 0 108838..110211 - 457 82542715 aroP SBO_0101 - aromatic amino acid transporter 98 55.29 0 110752..111516 + 254 82542716 pdhR SBO_0102 - transcriptional regulator PdhR 99 53.15 0 111677..114340 + 887 82542717 aceE SBO_0103 - pyruvate dehydrogenase subunit E1 100 54.34 0 114355..115944 + 529 82542718 aceF SBO_0104 - dihydrolipoamide acetyltransferase 51.65 MEAN 4.17 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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