IslandPathversion 1.0

IslandPath Analysis: Shigella boydii Sb227



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.17
Shigella boydii Sb227, complete genome - 1..4519823
4134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 52.90	0	335..2797	+	820	82542619	thrA	SBO_0001	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2	 55.73	0	2799..3731	+	310	82542620	thrB	SBO_0002	-	homoserine kinase
3	 53.22	0	3732..5018	+	428	82542621	thrC	SBO_0003	-	threonine synthase
4	 53.87	0	5232..5528	+	98	82542622	-	SBO_0004	-	hypothetical protein
5	 49.68	0	5681..6457	-	258	82542623	yaaA	SBO_0005	-	hypothetical protein
6	 49.35	0	6639..6869	-	76	82542624	-	SBO_0006	-	putative IS1 encoded protein
7	 52.98	0	6962..7465	+	167	82542625	insB	SBO_0007	-	IS1 ORF2
8	 51.15	0	9013..9966	+	317	82542626	talB	SBO_0009	-	transaldolase B
9	 53.57	0	10081..10668	+	195	82542627	mogA	SBO_0010	-	molybdenum cofactor biosynthesis protein
10	 52.20	0	10703..11269	-	188	82542628	yaaH	SBO_0011	-	hypothetical protein
11	 50.56	0	11418..12131	-	237	82542629	-	SBO_0012	-	hypothetical protein
12	 53.17	0	12356..12859	-	167	82542630	insB	SBO_0013	-	IS1 ORF2
13	 46.85	-1	12934..13155	+	73	82542631	-	SBO_0014	-	putative IS1 encoded protein
14	 51.17	0	13301..15217	+	638	82542632	dnaK	SBO_0015	-	molecular chaperone DnaK
15	 55.26	0	15306..16436	+	376	82542633	dnaJ	SBO_0016	-	chaperone protein DnaJ
16	 51.43	0	16540..16749	-	69	82542634	gef	SBO_0017	-	Gef
17	 51.67	0	17278..18444	+	388	82542635	nhaA	SBO_0018	-	pH-dependent sodium/proton antiporter
18	 47.90	0	18504..19409	+	301	82542636	nhaR	SBO_0019	-	transcriptional activator NhaR
19	 49.71	0	19907..20077	-	56	82542637	-	SBO_0020	-	putative IS1 encoded protein
20	 52.98	0	20170..20673	+	167	82542638	insB	SBO_0021	-	IS1 ORF2
21	 46.59	-1	20907..21170	-	87	82542639	rpsT	SBO_0022	-	30S ribosomal protein S20
22	 48.86	0	21273..21491	+	72	82542640	-	SBO_0023	-	hypothetical protein
23	 53.08	0	21499..22440	+	313	82542641	ribF	SBO_0024	-	bifunctional riboflavin kinase/FMN adenylyltransferase
24	 55.73	0	22483..25299	+	938	82542642	ileS	SBO_0025	-	isoleucyl-tRNA synthetase
25	 53.33	0	25299..25793	+	164	82542643	lspA	SBO_0026	-	lipoprotein signal peptidase
26	 54.00	0	25862..26311	+	149	82542644	slpA	SBO_0027	-	FKBX-type 16KD peptidyl-prolyl cis-trans isomerase
27	 55.10	0	26313..27263	+	316	82542645	ispH	SBO_0028	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
28	 56.07	+1	27329..28243	+	304	82542646	yaaF	SBO_0029	-	ribonucleoside hydrolase RihC
29	 53.89	0	28410..29231	+	273	82542647	dapB	SBO_0030	-	dihydrodipicolinate reductase
30	 53.26	0	29686..30834	+	382	82542648	carA	SBO_0031	-	carbamoyl phosphate synthase small subunit
31	 56.24	+1	30852..34073	+	1073	82542649	carB	SBO_0032	-	carbamoyl phosphate synthase large subunit
32	 53.17	0	34194..34697	-	167	82542650	insB	SBO_0033	-	IS1 ORF2
33	 52.75	0	34811..36226	+	471	161984994	yaaU	SBO_0034	-	putative transport protein
34	 54.24	0	36308..36838	+	176	82542652	yabF	SBO_0035	-	glutathione-regulated potassium-efflux system ancillary protein KefF
35	 55.77	0	36831..38693	+	620	82542653	kefC	SBO_0036	-	glutathione-regulated potassium-efflux system protein KefC
36	 53.33	0	38885..39364	+	159	82542654	folA	SBO_0037	-	dihydrofolate reductase
37	 55.63	0	39442..40284	-	280	82542655	apaH	SBO_0038	-	diadenosine tetraphosphatase
38	 51.85	0	40291..40668	-	125	82542656	apaG	SBO_0039	-	ApaG
39	 53.28	0	40671..41492	-	273	82542657	ksgA	SBO_0040	-	dimethyladenosine transferase
40	 56.46	+1	41489..42478	-	329	82542658	pdxA	SBO_0041	-	4-hydroxythreonine-4-phosphate dehydrogenase
41	 54.08	0	42478..43764	-	428	82542659	surA	SBO_0042	-	peptidyl-prolyl cis-trans isomerase SurA
42	 51.46	0	43817..46171	-	784	82542660	imp	SBO_0043	-	organic solvent tolerance protein
43	 52.94	0	46426..47241	+	271	82542661	djlA	SBO_0044	-	DNA-J like membrane chaperone protein
44	 54.24	0	47358..48017	-	219	82542662	yabO	SBO_0045	-	23S rRNA/tRNA pseudouridine synthase A
45	 55.11	0	48029..50935	-	968	82542663	hepA	SBO_0046	-	ATP-dependent helicase HepA
46	 55.40	0	51099..53450	-	783	82542664	polB	SBO_0047	-	DNA polymerase II
47	 54.89	0	53525..54220	-	231	82542665	araD	SBO_0048	-	L-ribulose-5-phosphate 4-epimerase
48	 55.16	0	54420..55922	-	500	82542666	araA	SBO_0049	-	L-arabinose isomerase
49	 57.97	+1	55933..57633	-	566	82542667	araB	SBO_0050	-	ribulokinase
50	 52.67	0	57972..58850	+	292	82542668	araC	SBO_0051	-	DNA-binding transcriptional regulator AraC
51	 54.64	0	58936..59700	+	254	82542669	yabI	SBO_0052	-	hypothetical protein
52	 57.37	+1	59813..60511	-	232	82542670	thiQ	SBO_0053	-	thiamine transporter ATP-binding subunit
53	 58.04	+1	60495..62105	-	536	82542671	thiP	SBO_0054	-	thiamine transporter membrane protein
54	 52.95	0	62081..63064	-	327	82542672	tbpA	SBO_0055	-	thiamine transporter substrate binding subunit
55	 55.13	0	63228..64883	-	551	82542673	yabN	SBO_0056	-	transcriptional regulator SgrR
56	 48.11	0	65205..66287	+	360	82542674	yabM	SBO_0057	-	putative transport protein
57	 51.82	0	66336..66941	-	201	82542675	leuD	SBO_0058	-	isopropylmalate isomerase small subunit
58	 55.46	0	66952..68352	-	466	82542676	leuC	SBO_0059	-	isopropylmalate isomerase large subunit
59	 55.40	0	68355..69446	-	363	161984993	leuB	SBO_0060	-	3-isopropylmalate dehydrogenase
60	 52.99	0	69446..71017	-	523	82542678	leuA	SBO_0061	-	2-isopropylmalate synthase
61	 47.13	-1	71110..71196	-	28	82542679	leuL	SBO_0062	-	leu operon leader peptide
62	 53.17	0	71769..72272	+	167	82542680	insB	SBO_0063	-	IS1 ORF2
63	 52.52	0	73633..75357	+	574	82542681	ilvI	SBO_0065	-	acetolactate synthase 3 catalytic subunit
64	 50.20	0	75360..75851	+	163	82542682	ilvH	SBO_0066	-	acetolactate synthase 3 regulatory subunit
65	 47.13	-1	75863..75949	+	28	82542683	fruL	SBO_0067	-	fruR leader peptide
66	 54.93	0	76031..77035	+	334	82542684	fruR	SBO_0068	-	DNA-binding transcriptional regulator FruR
67	 51.63	0	77637..78095	+	152	82542685	yabB	SBO_0069	-	cell division protein MraZ
68	 55.20	0	78097..79038	+	313	82542686	mraW	SBO_0070	-	S-adenosyl-methyltransferase MraW
69	 50.55	0	79035..79400	+	121	82542687	ftsL	SBO_0071	-	cell division protein FtsL
70	 53.76	0	79416..81182	+	588	82542688	ftsI	SBO_0072	-	penicillin-binding protein 3
71	 56.32	+1	81169..82656	+	495	82542689	murE	SBO_0073	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
72	 55.11	0	82653..84011	+	452	82542690	murF	SBO_0074	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
73	 53.28	0	84005..85087	+	360	82542691	mraY	SBO_0075	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
74	 55.35	0	85090..86406	+	438	82542692	murD	SBO_0076	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
75	 53.25	0	86406..87650	+	414	82542693	ftsW	SBO_0077	-	cell division protein FtsW
76	 56.18	+1	87647..88714	+	355	82542694	murG	SBO_0078	-	N-acetylglucosaminyl transferase
77	 54.54	0	88768..90243	+	491	82542695	murC	SBO_0079	-	UDP-N-acetylmuramate--L-alanine ligase
78	 51.68	0	90236..91156	+	306	82542696	ddl	SBO_0080	-	D-alanine--D-alanine ligase
79	 53.43	0	91158..91988	+	276	82542697	ftsQ	SBO_0081	-	cell division protein FtsQ
80	 52.10	0	91985..93247	+	420	82542698	ftsA	SBO_0082	-	cell division protein FtsA
81	 53.19	0	93269..94567	-	432	82542700	-	SBO_0084	-	hypothetical protein
82	 50.76	0	94560..95477	+	305	82542699	lpxC	SBO_0083	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
83	 53.80	0	95708..96220	+	170	161984992	yacA	SBO_0085	-	SecA regulator SecM
84	 52.33	0	96282..98987	+	901	82542702	secA	SBO_0086	-	preprotein translocase subunit SecA
85	 49.74	0	99047..99436	+	129	82542703	mutT	SBO_0087	-	nucleoside triphosphate pyrophosphohydrolase
86	 55.56	0	99458..99592	-	44	82542704	-	SBO_0088	-	hypothetical protein
87	 51.52	0	99543..99740	-	65	82542705	yacG	SBO_0089	-	zinc-binding protein
88	 51.21	0	99750..100493	-	247	82542706	yacF	SBO_0090	-	hypothetical protein
89	 52.82	0	100493..101113	-	206	82542707	coaE	SBO_0091	-	dephospho-CoA kinase
90	 51.15	0	101338..102381	+	347	82542708	guaC	SBO_0092	-	guanosine 5'-monophosphate oxidoreductase
91	 49.07	0	102301..102408	-	35	82542709	-	SBO_0093	-	hypothetical protein
92	 52.87	0	102416..103618	-	400	82542710	hofC	SBO_0094	-	type IV pilin biogenesis protein
93	 53.37	0	105502..106005	+	167