IslandPath Analysis: Stenotrophomonas maltophilia R551-3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.50   STD DEV: 3.05
Stenotrophomonas maltophilia R551-3, complete genome - 1..4573969
4039 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.04	0	215..1546	+	443	194363779	-	Smal_0001	-	chromosomal replication initiator protein DnaA
2	 63.49	0	1823..2923	+	366	194363780	-	Smal_0002	-	DNA polymerase III, beta subunit
3	 66.21	0	3921..5015	+	364	194363781	-	Smal_0003	-	DNA replication and repair protein RecF
4	 64.11	0	5128..7587	+	819	194363782	-	Smal_0004	-	DNA gyrase, B subunit
5	 67.61	0	7655..8500	+	281	194363783	-	Smal_0005	-	Abortive infection protein
6	 66.05	0	8572..9378	+	268	194363784	-	Smal_0006	-	peptidase M48 Ste24p
7	 63.47	0	9511..10698	+	395	194363785	-	Smal_0007	-	TPR repeat-containing protein
8	 67.41	0	10842..11510	+	222	194363786	-	Smal_0008	-	TonB family protein
9	 64.17	0	11606..12367	+	253	194363787	-	Smal_0009	-	MotA/TolQ/ExbB proton channel
10	 59.39	-2	12428..12853	+	141	194363788	-	Smal_0010	-	Biopolymer transport protein ExbD/TolR
11	 62.56	-1	12857..13270	+	137	194363789	-	Smal_0011	-	Biopolymer transport protein ExbD/TolR
12	 66.39	0	13421..14881	+	486	194363790	-	Smal_0012	-	phospholipase D/Transphosphatidylase
13	 68.15	0	14922..15191	+	89	194363791	-	Smal_0013	-	hypothetical protein
14	 69.09	0	15201..15944	+	247	194363792	-	Smal_0014	-	Pyridoxal phosphate biosynthetic protein PdxJ
15	 63.28	-1	16088..17179	+	363	194363793	-	Smal_0015	-	Radical SAM domain protein
16	 59.41	-2	17350..20574	+	1074	194363794	-	Smal_0016	-	YD repeat protein
17	 57.69	-2	20769..22985	+	738	194363795	-	Smal_0017	-	YD repeat protein
18	 59.02	-2	22991..23173	+	60	194363796	-	Smal_0018	-	hypothetical protein
19	 63.84	0	23234..23941	-	235	194363797	-	Smal_0019	-	hypothetical protein
20	 65.78	0	24049..25065	-	338	194363798	-	Smal_0020	-	Inositol phosphatase/fructose-16-bisphosphatase
21	 66.92	0	25398..26600	-	400	194363799	-	Smal_0021	-	Aspartate transaminase
22	 70.58	+1	26772..28865	+	697	194363800	-	Smal_0022	-	TonB-dependent receptor
23	 69.57	+1	29094..29438	-	114	194363801	-	Smal_0023	-	hypothetical protein
24	 68.42	0	29586..29984	+	132	194363802	-	Smal_0024	-	hypothetical protein
25	 61.59	-1	30139..31044	+	301	194363803	-	Smal_0025	-	Ku protein
26	 65.46	0	31048..33525	+	825	194363804	-	Smal_0026	-	DNA ligase D
27	 67.94	0	33597..33989	-	130	194363805	-	Smal_0027	-	hypothetical protein
28	 66.57	0	34147..35175	-	342	194363806	-	Smal_0028	-	Alcohol dehydrogenase GroES domain protein
29	 70.58	+1	35272..35910	-	212	194363807	-	Smal_0029	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
30	 66.67	0	36026..36682	-	218	194363808	-	Smal_0030	-	cysteine dioxygenase type I
31	 67.42	0	36856..37911	+	351	194363809	-	Smal_0031	-	transcriptional regulator, LacI family
32	 64.43	0	38010..38903	-	297	194363810	-	Smal_0032	-	phenylalanine-4-hydroxylase
33	 64.20	0	39029..39514	+	161	194363811	-	Smal_0033	-	transcriptional regulator, AsnC family
34	 61.29	-1	39662..40405	+	247	194363812	-	Smal_0034	-	hypothetical protein
35	 68.88	0	40452..41444	-	330	194363813	-	Smal_0035	-	Patatin
36	 68.93	0	41729..42745	-	338	194363814	-	Smal_0036	-	protein of unknown function DUF124
37	 65.08	0	42905..45178	+	757	194363815	-	Smal_0037	-	TonB-dependent receptor
38	 69.88	+1	45291..46130	-	279	194363816	-	Smal_0038	-	Acid phosphatase
39	 66.89	0	46392..47270	+	292	194363817	-	Smal_0039	-	hypothetical protein
40	 71.99	+1	47282..48484	+	400	194363818	-	Smal_0040	-	hypothetical protein
41	 68.78	0	48628..49479	-	283	194363819	-	Smal_0041	-	ABC transporter related
42	 68.33	0	49601..50803	+	400	194363820	-	Smal_0042	-	fatty acid desaturase
43	 67.27	0	50800..51132	+	110	194363821	-	Smal_0043	-	hypothetical protein
44	 67.56	0	51363..52145	+	260	194363822	-	Smal_0044	-	hypothetical protein
45	 70.60	+1	52216..53028	+	270	194363823	-	Smal_0045	-	formamidopyrimidine-DNA glycosylase
46	 67.91	0	53134..54738	+	534	194363824	-	Smal_0046	-	periplasmic glucan biosynthesis protein MdoG
47	 66.51	0	55261..55881	-	206	194363825	-	Smal_0047	-	Thymidine kinase
48	 67.76	0	55891..56619	-	242	194363826	-	Smal_0048	-	hypothetical protein
49	 66.80	0	56655..57383	-	242	194363827	-	Smal_0049	-	Sel1 domain protein repeat-containing protein
50	 65.25	0	57483..59459	+	658	194363828	-	Smal_0050	-	ATP-dependent DNA helicase Rep
51	 64.58	0	59721..60248	+	175	194363829	-	Smal_0051	-	acetyltransferase
52	 70.97	+1	60347..60997	-	216	194363830	-	Smal_0052	-	protein of unknown function DUF480
53	 68.07	0	61099..62022	+	307	194363831	-	Smal_0053	-	5'-nucleotidase, lipoprotein e(P4) family
54	 69.83	+1	62019..62744	+	241	194363832	-	Smal_0054	-	orotidine 5'-phosphate decarboxylase
55	 70.86	+1	63143..64096	+	317	194363833	-	Smal_0055	-	hypothetical protein
56	 67.24	0	64096..66732	+	878	194363834	-	Smal_0056	-	Glycerol-3-phosphate O-acyltransferase
57	 64.71	0	66823..67026	-	67	194363835	-	Smal_0057	-	hypothetical protein
58	 67.00	0	67117..68013	+	298	194363836	-	Smal_0058	-	PP-loop domain protein
59	 64.90	0	68050..68955	+	301	194363837	-	Smal_0059	-	putative exonuclease RdgC
60	 68.21	0	69015..69794	+	259	194363838	-	Smal_0060	-	protein of unknown function DUF45
61	 68.17	0	70087..70953	-	288	194363839	-	Smal_0061	-	hypothetical protein
62	 69.51	0	71106..73529	+	807	194363840	-	Smal_0062	-	multi-sensor hybrid histidine kinase
63	 69.29	0	73515..74960	-	481	194363841	-	Smal_0063	-	glutamate synthase, small subunit
64	 67.41	0	75046..79500	-	1484	194363842	-	Smal_0064	-	Glutamate synthase (ferredoxin)
65	 71.79	+1	79676..80065	-	129	194363843	-	Smal_0065	-	hypothetical protein
66	 70.82	+1	80177..81235	+	352	194363844	-	Smal_0066	-	hypothetical protein
67	 69.90	+1	81223..81531	-	102	194363845	-	Smal_0067	-	hypothetical protein
68	 66.76	0	81748..82854	+	368	194363846	-	Smal_0068	-	short-chain dehydrogenase/reductase SDR
69	 69.21	0	82974..84389	+	471	194363847	-	Smal_0069	-	hypothetical protein
70	 67.29	0	84390..85193	+	267	194363848	-	Smal_0070	-	hypothetical protein
71	 67.02	0	85128..86249	-	373	194363849	-	Smal_0071	-	beta-lactamase
72	 68.35	0	86394..87341	-	315	194363850	-	Smal_0072	-	transcriptional regulator, AraC family
73	 68.22	0	87475..87861	+	128	194363851	-	Smal_0073	-	hypothetical protein
74	 66.99	0	87851..89071	+	406	194363852	-	Smal_0074	-	major facilitator superfamily MFS_1
75	 66.71	0	89089..91344	+	751	194363853	-	Smal_0075	-	TonB-dependent receptor
76	 68.22	0	91452..91838	+	128	194363854	-	Smal_0076	-	transcriptional repressor, CopY family
77	 71.63	+1	91842..93836	+	664	194363855	-	Smal_0077	-	peptidase M56 BlaR1
78	 68.57	0	93930..94244	-	104	194363856	-	Smal_0078	-	lipoprotein, putative
79	 69.31	0	94311..95333	-	340	194363857	-	Smal_0079	-	hypothetical protein
80	 67.47	0	95330..97819	-	829	194363858	-	Smal_0080	-	DEAD/DEAH box helicase domain protein
81	 68.21	0	98032..98550	+	172	194363859	-	Smal_0081	-	hypothetical protein
82	 68.15	0	98590..99264	+	224	194363860	-	Smal_0082	-	hypothetical protein
83	 70.59	+1	99364..101172	-	602	194363861	-	Smal_0083	-	hypothetical protein
84	 69.68	+1	101169..103355	-	728	194363862	-	Smal_0084	-	hypothetical protein
85	 70.41	+1	103352..104473	-	373	194363863	-	Smal_0085	-	hypothetical protein
86	 69.79	+1	104470..105366	-	298	194363864	-	Smal_0086	-	protein of unknown function DUF58
87	 68.70	0	105374..106357	-	327	194363865	-	Smal_0087	-	ATPase associated with various cellular activities AAA_3
88	 64.27	0	106374..107081	-	235	194363866	-	Smal_0088	-	hypothetical protein
89	 64.87	0	107081..108415	-	444	194363867	-	Smal_0089	-	peptidase U62 modulator of DNA gyrase
90	 65.38	0	108437..110071	-	544	194363868	-	Smal_0090	-	peptidase U62 modulator of DNA gyrase
91	 66.79	0	110099..111730	-	543	194363869	-	Smal_0091	-	peptidase U62 modulator of DNA gyrase
92	 69.11	0	112416..113030	+	204	194363870	-	Smal_0092	-	protein of unknown function DUF938
93	 61.07	-1	113031..114353	-	440	194363871	-	Smal_0093	-	HipA N-terminal domain protein
94	 64.34	0	114357..114614	-	85	194363872	-	Smal_0094	-	transcriptional regulator, XRE family
95	 66.64	0	114772..118458	-	1228	194363873	-	Smal_0095	-	pyruvate ferredoxin/flavodoxin oxidoreductase
96	 68.71	0	118628..119263	+	211	194363874	-	Smal_0096	-	hypothetical protein
97	 68.69	0	119856..121340	-	494	194363875	-	Smal_0097	-	AAA ATPase central domain protein
98	 67.62	0	121464..122093	+	209	194363876	-	Smal_0098	-	partition protein
99	 67.92	0	122131..122607	+	158	194363877	-	Smal_0099	-	putative phosphohistidine phosphatase, SixA
100	 66.83	0	122612..123229	+	205	194363878	-	Smal_0100	-	YceI family protein
66.50	MEAN

3.05	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.