IslandPath Analysis: Rickettsia typhi str. Wilmington



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.88   STD DEV: 3.61
Rickettsia typhi str. Wilmington, complete genome - 1..1111496
838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 26.76	0	1..822	+	273	51473216	-	RT0001	-	hypothetical protein
2	 28.30	0	984..1301	+	105	51473217	trxA	RT0002	-	thioredoxin
3	 27.40	0	1312..2070	+	252	51473218	wzt	RT0003	-	O-antigen export system ATP-binding protein
4	 26.51	0	2067..2843	+	258	51473219	wzm	RT0004	-	O-antigen export system permease protein
5	 28.98	0	2840..5896	+	1018	51473220	-	RT0005	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 33.21	0	6007..6801	-	264	51473221	lpxA	RT0006	-	UDP-N-acetylglucosamine acyltransferase
7	 33.33	0	6811..7248	-	145	51473222	fabZ	RT0007	-	(3R)-hydroxymyristoyl-ACP dehydratase
8	 32.85	0	7429..8469	-	346	51473223	lpxD	RT0008	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
9	 37.80	+2	9295..10278	+	327	51473224	-	RT0010	-	NifR3-like protein
10	 26.54	0	10275..11348	+	357	51473225	-	RT0011	-	hypothetical protein
11	 26.21	-1	11414..11848	-	144	51473226	-	RT0012	-	hypothetical protein
12	 25.06	-1	11836..12741	-	301	51473227	znuA	RT0013	-	zinc/manganese ABC transporter substrate binding protein
13	 26.20	-1	12738..13901	-	387	51473228	pcnB	RT0014	-	NTP polymerase.
14	 30.83	0	14663..18055	+	1130	51473229	sca1	RT0015	-	190 kDa antigen precursor
15	 31.65	0	19633..20106	-	157	51473230	ruvC	RT0017	-	Holliday junction resolvase
16	 29.39	0	20165..21052	-	295	51473231	era	RT0018	-	GTP-binding protein Era
17	 30.12	0	21045..21728	-	227	51473232	rnc	RT0019	-	ribonuclease III
18	 29.56	0	21728..22522	-	264	51473233	lepB	RT0020	-	leader peptidase I
19	 37.44	+2	22711..23976	-	421	51473234	nuoF	RT0021	-	NADH dehydrogenase I subunit F
20	 29.13	0	24146..25072	-	308	51473235	secF	RT0022	-	preprotein translocase subunit SecF
21	 31.22	0	25145..25381	+	78	51473236	-	RT0023	-	hypothetical protein
22	 33.33	0	25526..25942	-	138	51473237	rplS	RT0024	-	50S ribosomal protein L19
23	 35.46	+1	25959..26663	-	234	51473238	trmD	RT0025	-	tRNA (guanine-N(1)-)-methyltransferase
24	 30.74	0	27080..28237	-	385	51473239	ackA	RT0026	-	acetokinase
25	 36.48	+1	28239..29288	-	349	51473240	pta	RT0027	-	phosphate acetyltransferase
26	 30.33	0	29679..33143	-	1154	51473241	-	RT0028	-	VirB6-like protein of the type IV secretion system
27	 29.65	0	33268..35928	-	886	51473242	-	RT0029	-	VirB6-like protein of the type IV secretion system
28	 31.72	0	36090..39005	-	971	51473243	-	RT0030	-	VirB6-like protein of the type IV secretion system
29	 32.25	0	39009..41033	-	674	51473244	-	RT0031	-	VirB6-like protein of the type IV secretion system
30	 32.69	0	41020..44427	-	1135	51473245	-	RT0032	-	VirB6-like protein of the type IV secretion system
31	 32.59	0	44546..46963	-	805	51473246	virB4a	RT0033	-	VirB4 protein precursor
32	 29.51	0	47136..47423	-	95	51473247	virB3	RT0034	-	type IV secretory system protein VirB3
33	 28.53	0	48098..48742	-	214	51473248	engB	RT0035	-	GTPase EngB
34	 29.54	0	49208..49444	-	78	51473249	rpmE	RT0037	-	50S ribosomal protein L31
35	 31.63	0	49441..49734	-	97	51473250	rpmB	RT0038	-	50S ribosomal protein L28
36	 25.00	-1	51017..51268	-	83	51473251	-	RT0039	-	hypothetical protein
37	 30.57	0	51270..52028	-	252	51473252	mkl	RT0040	-	ribonucleotide ABC transporter ATP-binding protein
38	 33.59	+1	52034..52813	-	259	51473253	-	RT0041	-	ABC transporter permease protein
39	 32.18	0	52970..54178	-	402	51473254	alr	RT0042	-	alanine racemase
40	 28.33	0	54956..55555	-	199	51473255	-	RT0043	-	hypothetical protein
41	 31.61	0	55575..56330	-	251	51473256	vacJ	RT0044	-	lipoprotein precursor
42	 22.16	-2	56335..57345	-	336	51473257	-	RT0045	-	hypothetical protein
43	 32.42	0	57571..58770	+	399	51473258	aatA	RT0046	-	aspartate aminotransferase
44	 28.01	0	58889..59545	+	218	51473259	-	RT0047	-	hypothetical protein
45	 28.80	0	59542..60930	+	462	51473260	waaA	RT0048	-	3-deoxy-D-manno-octulosonic-acid transferase
46	 31.40	0	62040..62969	-	309	51473261	tsf	RT0049	-	elongation factor Ts
47	 30.52	0	63126..64013	-	295	51473262	rpsB	RT0050	-	30S ribosomal protein S2
48	 30.79	0	64418..65791	-	457	51473263	cysS	RT0051	-	cysteinyl-tRNA synthetase
49	 29.49	0	68152..72603	+	1483	51473264	sca2	RT0052	-	190 kDa antigen precursor
50	 27.39	0	73210..73512	-	100	51473265	secG	RT0053	-	preprotein translocase subunit SecG
51	 30.15	0	73744..75000	-	418	51473266	proP1	RT0055	-	proline/betaine transporter ProP1
52	 31.98	0	74987..75871	-	294	51473267	-	RT0056	-	hypothetical protein
53	 31.67	0	76015..76737	+	240	51473268	-	RT0057	-	OmpW-like outer membrane protein
54	 33.69	+1	76866..78263	+	465	51473269	pntB	RT0058	-	NAD(P)(+) transhydrogenase (B-specific) beta subunit
55	 32.44	0	78320..78880	+	186	51473270	-	RT0059	-	hypothetical protein
56	 27.47	0	79064..79882	-	272	51473271	queF	RT0060	-	7-cyano-7-deazaguanine reductase
57	 32.07	0	79886..80599	-	237	51473272	czcR	RT0061	-	transcriptional activator protein CzcR
58	 29.85	0	80782..81240	-	152	51473273	secB	RT0062	-	preprotein translocase subunit SecB
59	 31.75	0	81429..81995	-	188	51473274	dcd	RT0063	-	deoxycytidine triphosphate deaminase
60	 33.18	0	82266..83588	+	440	51473275	-	RT0064	-	hypothetical protein
61	 32.48	0	84353..86566	-	737	51473276	parC	RT0065	-	DNA topoisomerase IV subunit A
62	 28.70	0	86701..87348	-	215	51473277	-	RT0066	-	hypothetical protein
63	 31.77	0	87419..89149	-	576	51473278	argS	RT0067	-	arginyl-tRNA synthetase
64	 29.18	0	89158..90312	-	384	51473279	dgtP	RT0068	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
65	 32.73	0	90567..90899	+	110	51473280	iscA1	RT0069	-	iron-binding protein IscA/HesB
66	 32.24	0	92301..93125	-	274	51473281	kdsA	RT0070	-	2-dehydro-3-deoxyphosphooctonate aldolase
67	 20.51	-2	93161..93472	-	103	51473282	-	RT0071	-	hypothetical protein
68	 29.80	0	93475..95142	-	555	51473283	-	RT0072	-	putative ABC transporter ATP-binding protein
69	 26.83	0	95319..96179	-	286	51473284	parB	RT0073	-	chromosome partitioning protein ParB (Spo0J protein)
70	 27.73	0	96166..96933	-	255	51473285	parA	RT0074	-	chromosome partitioning protein ParA (Soj protein)
71	 23.44	-1	96930..97505	-	191	51473286	gidB	RT0075	-	glucose-inhibited division protein B
72	 30.98	0	97489..99354	-	621	51473287	gidA	RT0076	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
73	 30.50	0	99358..99780	-	140	51473288	ndk	RT0077	-	nucleoside diphosphate kinase
74	 34.34	+1	99919..101208	-	429	51473289	glpT	RT0078	-	glycerol-3-phosphate transporter
75	 29.33	0	101278..102774	-	498	51473290	tlcA	RT0079	-	ADP/ATP carrier protein 1
76	 27.78	0	104846..105241	+	131	51473291	-	RT0080	-	hypothetical protein
77	 27.56	0	105814..106350	-	178	51473292	pgsA	RT0081	-	3-phosphatidyl-1prime-glycerol-3prime-phosphate synthase.
78	 28.92	0	106350..108026	-	558	51473293	yidC	RT0082	-	putative inner membrane protein translocase component YidC
79	 26.05	-1	108196..109362	-	388	51473294	-	RT0083	-	hypothetical protein
80	 28.08	0	109598..110377	+	259	51473295	lgt	RT0084	-	prolipoprotein diacylglyceryl transferase
81	 28.97	0	110356..111432	+	358	51473296	-	RT0085	-	hypothetical protein
82	 34.86	+1	111886..112671	-	261	51473297	sdhB	RT0086	-	succinate dehydrogenase iron-sulfur subunit
83	 35.84	+1	112910..114823	-	637	51473298	ftsH	RT0087	-	cell division protein FtsH
84	 26.84	0	114874..116166	-	430	51473299	mesJ	RT0088	-	cell cycle ATPase MesJ
85	 30.43	0	116339..116854	-	171	51473300	rplI	RT0089	-	50S ribosomal protein L9
86	 29.86	0	116866..117153	-	95	51473301	rpsR	RT0090	-	30S ribosomal protein S18
87	 26.50	0	117178..117543	-	121	51473302	rpsF	RT0091	-	30S ribosomal protein S6
88	 29.04	0	118420..119607	+	395	51473303	aco1	RT0092	-	Acyl-CoA desaturase.
89	 31.79	0	119725..120888	+	387	51473304	gcp	RT0093	-	O-sialoglycoprotein endopeptidase
90	 33.68	+1	121536..124112	-	858	51473305	clpB	RT0094	-	ATP-binding ClpB chaperone
91	 33.33	0	125155..125880	+	241	51473306	phbB	RT0095	-	acetoacetyl-CoA reductase
92	 30.84	0	126476..127798	+	440	51473307	-	RT0096	-	hypothetical protein
93	 23.86	-1	128082..128672	-	196	51473308	-	RT0097	-	hypothetical protein
94	 30.70	0	128733..129302	+	189	51473309	-	RT0098	-	hypothetical protein
95	 29.24	0	131548..132207	+	219	51473310	-	RT0099	-	hypothetical protein
96	 28.35	0	134379..135461	+	360	51473311	recF	RT0100	-	recombination protein F
97	 30.09	0	135704..137308	+	534	51473312	-	RT0101	-	hypothetical protein
98	 33.52	+1	137564..138097	-	177	51473313	-	RT0102	-	hypothetical protein
99	 28.66	0	138255..139067	+	270	51473314	-	RT0103	-	hypothetical protein
100	 27.31	0	139126..139374	+	82	51473315	-	RT0104	-	hypothetical protein
29.88	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.