IslandPath Analysis: Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.30   STD DEV: 5.58
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, complete genome - 1..4585229
4093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.55	0	190..255	+	21	56412277	thrL	SPA0001	-	thr operon leader peptide
2	 56.15	0	337..2799	+	820	56412278	thrA	SPA0002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
3	 57.96	+1	2801..3730	+	309	56412279	thrB	SPA0003	-	homoserine kinase
4	 56.02	0	3734..5020	+	428	56412280	thrC	SPA0004	-	threonine synthase
5	 50.39	0	5114..5887	-	257	56412281	yaaA	SPA0005	-	hypothetical protein
6	 53.98	0	7664..8617	+	317	56412282	talB	SPA0007	-	transaldolase B
7	 55.84	0	8728..9318	+	196	56412283	mogA	SPA0008	-	molybdenum cofactor biosynthesis protein
8	 53.97	0	9375..9941	-	188	56412284	yaaH	SPA0009	-	hypothetical protein
9	 54.34	0	10091..10804	-	237	56412285	htgA	SPA0010	-	hypothetical protein
10	 49.38	0	10840..11244	-	134	56412286	yaaI	SPA0011	-	hypothetical protein
11	 52.79	0	11594..13510	+	638	56412287	dnaK	SPA0012	-	molecular chaperone DnaK
12	 53.63	0	13596..14723	+	375	56412288	dnaJ	SPA0013	-	chaperone protein DnaJ
13	 40.72	-2	15007..15954	+	315	56412289	-	SPA0014	-	putative regulatory protein
14	 40.29	-2	16081..16425	+	114	56412290	-	SPA0015	-	hypothetical protein
15	 50.75	0	16486..17019	-	177	56412291	-	SPA0016	-	hypothetical protein
16	 37.84	-2	17036..17479	-	147	56412292	-	SPA0017	-	hypothetical protein
17	 54.11	0	19991..23047	+	1018	56412293	-	SPA0019	-	putative hydroxymethyltransferase
18	 46.10	-1	23328..24032	+	234	56412294	-	SPA0020	-	hypothetical protein
19	 52.12	0	24462..25004	+	180	56412295	bcfA	SPA0021	-	fimbrial subunit
20	 51.09	0	25105..25791	+	228	56412296	bcfB	SPA0022	-	fimbrial chaperone
21	 54.16	0	25796..28417	+	873	56412297	bcfC	SPA0023	-	fimbrial usher
22	 50.40	0	28418..29425	+	335	56412298	bcfD	SPA0024	-	fimbrial subunit
23	 47.62	0	29426..29971	+	181	56412299	bcfE	SPA0025	-	fimbrial subunit
24	 54.18	0	30498..31202	+	234	56412300	bcfG	SPA0027	-	fimbrial chaperone
25	 54.49	0	31267..32112	+	281	56412301	bcfH	SPA0028	-	hypothetical protein
26	 41.67	-1	32151..32438	+	95	56412302	-	SPA0029	-	hypothetical protein
27	 36.67	-2	32538..32987	-	149	56412303	-	SPA0030	-	hypothetical protein
28	 38.55	-2	33357..34352	+	331	56412304	-	SPA0031	-	LysR family transcriptional regulator
29	 35.16	-2	34369..34806	-	145	56412305	-	SPA0032	-	putative transcription regulator
30	 45.96	-1	35329..37047	+	572	56412306	-	SPA0033	-	sulfatase
31	 46.69	-1	37093..38664	-	523	56412307	-	SPA0034	-	putative secreted 5'-nucleotidase
32	 44.23	-1	38763..39524	-	253	56412308	-	SPA0035	-	hypothetical protein
33	 49.58	0	41692..42879	+	395	56412309	-	SPA0037	-	sulfatase regulatory protein
34	 49.84	0	42904..44151	+	415	56412310	-	SPA0038	-	hypothetical protein
35	 50.23	0	44278..45993	+	571	56412311	-	SPA0039	-	sulfatase
36	 56.38	0	46156..47322	+	388	56412312	nhaA	SPA0040	-	pH-dependent sodium/proton antiporter
37	 50.67	0	47384..48283	+	299	56412313	nhaR	SPA0041	-	transcriptional activator NhaR
38	 54.12	0	48362..50377	-	671	56412314	-	SPA0042	-	putative glycosyl hydrolase
39	 48.40	0	50417..51790	-	457	56412315	-	SPA0043	-	putative transport protein
40	 46.59	-1	52246..52509	-	87	56412316	rpsT	SPA0044	-	30S ribosomal protein S20
41	 47.69	0	52615..52830	+	71	56412317	yaaY	SPA0045	-	hypothetical protein
42	 56.66	0	52838..53776	+	312	56412318	ribF	SPA0046	-	bifunctional riboflavin kinase/FMN adenylyltransferase
43	 54.71	0	53821..56655	+	944	56412319	ileS	SPA0047	-	isoleucyl-tRNA synthetase
44	 51.70	0	56655..57155	+	166	56412320	lspA	SPA0048	-	lipoprotein signal peptidase
45	 54.67	0	57310..57759	+	149	56412321	fkpB	SPA0049	-	FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase
46	 57.62	0	57762..58712	+	316	56412322	ispH	SPA0050	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
47	 47.88	0	58912..60114	+	400	56412323	-	SPA0051	-	hypothetical protein
48	 55.30	0	60130..61044	+	304	56412324	yaaF	SPA0052	-	ribonucleoside hydrolase RihC
49	 48.47	0	61066..61752	-	228	56412325	citB	SPA0053	-	transcriptional regulatory protein citb
50	 48.21	0	61754..63373	-	539	56412326	-	SPA0054	-	putative transcriptional regulator
51	 64.10	+2	63508..64791	-	427	56412327	oadB	SPA0055	-	oxaloacetate decarboxylase beta chain
52	 64.63	+2	64804..66570	-	588	56412328	oadA	SPA0056	-	pyruvate carboxylase subunit B
53	 55.83	0	66586..66825	-	79	56412329	oadG	SPA0057	-	oxaloacetate decarboxylase subunit gamma
54	 49.44	0	66984..68324	-	446	56412330	-	SPA0058	-	citrate-sodium symporter
55	 54.02	0	68569..69612	+	347	56412331	citC	SPA0059	-	[citrate (Pro-3S)-lyase] ligase
56	 56.46	0	69642..69935	+	97	56412332	citD	SPA0060	-	citrate lyase subunit gamma
57	 54.71	0	69932..70801	+	289	56412333	citE	SPA0061	-	citrate lyase beta chain
58	 55.49	0	70812..72332	+	506	56412334	citF	SPA0062	-	citrate lyase alpha chain
59	 56.16	0	72332..72883	+	183	56412335	-	SPA0063	-	hypothetical protein
60	 54.79	0	72861..73769	+	302	56412336	citG	SPA0064	-	CitG protein
61	 56.33	0	73949..74770	+	273	56412337	dapB	SPA0065	-	dihydrodipicolinate reductase
62	 55.35	0	75631..76779	+	382	56412338	carA	SPA0067	-	carbamoyl phosphate synthase small subunit
63	 59.05	+1	76798..80025	+	1075	56412339	carB	SPA0068	-	carbamoyl phosphate synthase large subunit
64	 45.45	-1	80299..80694	+	131	56412340	caiF	SPA0069	-	DNA-binding transcriptional activator CaiF
65	 55.44	0	80772..81368	-	198	56412341	caiE	SPA0070	-	carnitine operon protein CaiE
66	 55.85	0	81479..82264	-	261	56412342	caiD	SPA0071	-	carnitinyl-CoA dehydratase
67	 50.26	0	82318..83871	-	517	56412343	caiC	SPA0072	-	putative crotonobetaine/carnitine-CoA ligase
68	 53.86	0	83934..85151	-	405	56412344	caiB	SPA0073	-	crotonobetainyl-CoA:carnitine CoA-transferase
69	 52.58	0	85263..86405	-	380	56412345	caiA	SPA0074	-	crotonobetainyl-CoA dehydrogenase
70	 53.62	0	86440..87957	-	505	56412346	caiT	SPA0075	-	L-carnitine/gamma-butyrobetaine antiporter
71	 52.14	0	88447..89217	+	256	56412347	fixA	SPA0076	-	putative electron transfer flavoprotein FixA
72	 59.24	+1	89233..90174	+	313	56412348	fixB	SPA0077	-	putative electron transfer flavoprotein FixB
73	 55.63	0	90224..91510	+	428	56412349	fixC	SPA0078	-	putative oxidoreductase FixC
74	 54.17	0	91507..91794	+	95	56412350	fixX	SPA0079	-	ferredoxin like protein FixX
75	 54.14	0	91942..93282	+	446	56412351	yaaU	SPA0080	-	putative metabolite transport protein
76	 48.48	0	93371..93601	+	76	56412352	-	SPA0081	-	putative lipoprotein
77	 46.57	-1	93873..94295	+	140	56412353	-	SPA0082	-	hypothetical protein
78	 46.39	-1	94519..94809	-	96	56412354	-	SPA0083	-	hypothetical protein
79	 36.41	-2	95019..95213	+	64	56412355	-	SPA0084	-	hypothetical protein
80	 46.46	-1	95707..97596	+	629	56412356	-	SPA0085	-	putative sulfatase
81	 58.24	+1	98674..100536	+	620	56412357	kefC	SPA0087	-	glutathione-regulated potassium-efflux system protein KefC
82	 53.54	0	100735..101214	+	159	56412358	folA	SPA0088	-	dihydrofolate reductase
83	 55.83	0	101320..102168	-	282	56412359	apaH	SPA0089	-	diadenosine tetraphosphatase
84	 54.50	0	102179..102556	-	125	56412360	apaG	SPA0090	-	ApaG
85	 52.55	0	102559..103380	-	273	56412361	ksgA	SPA0091	-	dimethyladenosine transferase
86	 58.69	+1	103377..104366	-	329	56412362	pdxA	SPA0092	-	4-hydroxythreonine-4-phosphate dehydrogenase
87	 54.47	0	104366..105652	-	428	56412363	surA	SPA0093	-	peptidyl-prolyl cis-trans isomerase SurA
88	 52.99	0	105706..108060	-	784	56412364	imp	SPA0094	-	organic solvent tolerance protein
89	 53.87	0	108314..109126	+	270	56412365	djlA	SPA0095	-	DNA-J like membrane chaperone protein
90	 57.12	0	109221..109880	-	219	56412366	rluA	SPA0096	-	23S rRNA/tRNA pseudouridine synthase A
91	 56.86	0	109892..112798	-	968	56412367	hepA	SPA0097	-	ATP-dependent helicase HepA
92	 56.68	0	112972..115323	-	783	56412368	polB	SPA0098	-	DNA polymerase II
93	 46.03	-1	115663..116103	-	146	56412369	-	SPA0099	-	putative IS element transposase
94	 48.88	0	116123..117331	+	402	56412370	-	SPA0100	-	putative IS element transposase
95	 47.39	0	117401..117898	-	165	56412371	-	SPA0101	-	hypothetical protein
96	 42.62	-1	118323..118742	+	139	56412372	-	SPA0102	-	hypothetical protein
97	 55.17	0	118748..119443	-	231	56412373	araD	SPA0103	-	L-ribulose-5-phosphate 4-epimerase
98	 56.22	0	119584..121086	-	500	56412374	araA	SPA0104	-	L-arabinose isomerase
99	 60.64	+1	121097..122806	-	569	56412375	araB	SPA0105	-	ribulokinase
100	 53.66	0	123147..123992	+	281	56412376	araC	SPA0106	-	DNA-binding transcriptional regulator AraC
52.30	MEAN

5.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.