IslandPath Analysis: Brucella canis ATCC 23365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.04   STD DEV: 4.25
Brucella canis ATCC 23365 chromosome II, complete sequence - 1..1206800
1149 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.02	0	155..1348	+	397	161620095	repC	BCAN_B0003	-	replication protein C
2	 47.33	-2	1413..1562	-	49	161620096	-	BCAN_B0004	-	hypothetical protein
3	 52.27	-1	1551..1814	+	87	161620097	-	BCAN_B0005	-	hypothetical protein
4	 51.75	-1	1963..2076	+	37	161620098	-	BCAN_B0006	-	hypothetical protein
5	 62.00	+1	2092..3033	+	313	161620099	rbsK	BCAN_B0007	-	ribokinase
6	 56.56	0	3110..4108	-	332	161620100	-	BCAN_B0008	-	inosine-uridine preferring nucleoside hydrolase
7	 63.16	+1	4131..5042	-	303	161620101	-	BCAN_B0009	-	inner-membrane translocator
8	 55.92	0	7745..8851	-	368	161620102	bmpA	BCAN_B0012	-	basic membrane protein A precursor
9	 58.46	0	9095..9703	+	202	161620103	-	BCAN_B0013	-	hypothetical protein
10	 62.75	+1	9675..10415	-	246	161620104	entD	BCAN_B0014	-	4'-phosphopantetheinyl transferase entD
11	 61.52	+1	10390..11166	-	258	161620105	-	BCAN_B0015	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
12	 60.82	0	11166..12038	-	290	161620106	phzD	BCAN_B0016	-	isochorismatase
13	 60.93	0	12090..13709	-	539	161620107	-	BCAN_B0017	-	enterobactin synthase subunit E
14	 58.87	0	15062..16471	+	469	161620108	tycC	BCAN_B0019	-	tyrocidine synthetase 3
15	 58.05	0	16519..17307	-	262	161620109	-	BCAN_B0020	-	oxidoreductase, molybdopterin-binding protein
16	 55.68	0	17304..18113	-	269	161620110	-	BCAN_B0021	-	HupC/HyaC/HydC family protein
17	 50.98	-1	18174..18428	-	84	161620111	-	BCAN_B0022	-	pentapeptide MXKDX repeat-containing protein
18	 59.81	0	18613..19137	+	174	161620112	-	BCAN_B0023	-	sigma-70 family RNA polymerase sigma factor
19	 63.68	+1	19127..19762	+	211	161620113	-	BCAN_B0024	-	hypothetical protein
20	 58.57	0	19808..20548	-	246	161620114	-	BCAN_B0025	-	GntR domain-containing protein
21	 55.44	0	20666..22081	+	471	161620115	-	BCAN_B0026	-	hypothetical protein
22	 57.58	0	22123..23112	+	329	161620116	-	BCAN_B0027	-	inner-membrane translocator
23	 61.34	+1	23116..24336	+	406	161620117	-	BCAN_B0028	-	inner-membrane translocator
24	 58.72	0	25088..25804	+	238	161620118	-	BCAN_B0030	-	ABC transporter related
25	 61.28	+1	25856..26338	+	160	161620119	-	BCAN_B0031	-	hypothetical protein
26	 59.08	0	26342..27079	+	245	161620120	fabG	BCAN_B0032	-	3-oxoacyl-(acyl-carrier-protein) reductase
27	 63.48	+1	27097..27849	+	250	161620121	cpnA	BCAN_B0033	-	cyclopentanol dehydrogenase
28	 62.24	+1	27959..30148	+	729	161620122	-	BCAN_B0034	-	dehydrogenase E1 component
29	 61.53	+1	30167..31432	+	421	161620123	-	BCAN_B0035	-	branched-chain alpha-keto acid dehydrogenase subunit E2
30	 61.70	+1	31533..32318	+	261	161620124	-	BCAN_B0036	-	shikimate dehydrogenase substrate binding subunit
31	 64.97	+1	32598..32891	+	97	161620125	-	BCAN_B0037	-	hypothetical protein
32	 59.57	0	32845..33126	-	93	161620126	-	BCAN_B0038	-	hypothetical protein
33	 59.27	0	33244..35961	+	905	161620127	mgtA	BCAN_B0039	-	magnesium-translocating P-type ATPase
34	 64.67	+1	36046..36396	+	116	161620128	-	BCAN_B0040	-	hypothetical protein
35	 60.78	0	36527..36730	+	67	161620129	-	BCAN_B0041	-	hypothetical protein
36	 59.14	0	36732..37448	+	238	161620130	-	BCAN_B0042	-	MgtC-magnesium transport family protein
37	 57.89	0	37523..38593	+	356	161620131	fixL	BCAN_B0043	-	sensor protein fixL
38	 55.40	0	38590..39228	+	212	161620132	dctR	BCAN_B0044	-	C4-dicarboxylate transport transcriptional regulatory protein dctR
39	 54.27	0	39614..39976	-	120	161620133	-	BCAN_B0046	-	hypothetical protein
40	 58.36	0	40295..41185	+	296	161620134	-	BCAN_B0047	-	N-formylglutamate amidohydrolase
41	 61.13	0	41347..42123	+	258	161620135	-	BCAN_B0048	-	histidinol-phosphate phosphatase
42	 61.24	0	42174..43169	-	331	161620136	-	BCAN_B0049	-	lysophospholipase
43	 49.54	-1	43209..43424	-	71	161620137	-	BCAN_B0050	-	hypothetical protein
44	 62.16	+1	43519..43917	-	132	161620138	-	BCAN_B0051	-	hypothetical protein
45	 48.57	-1	43969..44178	+	69	161620139	-	BCAN_B0052	-	hypothetical protein
46	 54.76	0	44151..44402	+	83	161620140	-	BCAN_B0053	-	hypothetical protein
47	 56.05	0	44481..44951	+	156	161620141	hspD	BCAN_B0054	-	small heat shock protein hspD
48	 60.00	0	45089..46138	-	349	161620142	ltaE	BCAN_B0055	-	low specificity L-threonine aldolase
49	 55.79	0	46407..46691	-	94	161620143	-	BCAN_B0056	-	hypothetical protein
50	 60.23	0	46781..51532	+	1583	161620144	-	BCAN_B0057	-	glutamate synthase large subunit protein
51	 60.48	0	51614..53068	+	484	161620145	gltD	BCAN_B0058	-	glutamate synthase subunit beta
52	 52.92	0	53113..54516	-	467	161620146	-	BCAN_B0059	-	amino acid permease-associated region
53	 58.85	0	54734..55885	-	383	161620147	-	BCAN_B0060	-	hypothetical protein
54	 57.23	0	56136..56654	-	172	161620148	-	BCAN_B0061	-	TraQ protein
55	 58.66	0	56803..57888	-	361	161620149	-	BCAN_B0062	-	P-type DNA transfer ATPase VirB11
56	 58.76	0	57869..59044	-	391	161620150	-	BCAN_B0063	-	hypothetical protein
57	 57.59	0	59041..59910	-	289	161620151	-	BCAN_B0064	-	P-type conjugative transfer protein VirB9
58	 55.83	0	59907..60626	-	239	161620152	-	BCAN_B0065	-	Type IV secretion system protein virB8
59	 58.05	0	60629..60802	-	57	161620153	-	BCAN_B0066	-	TraI protein
60	 55.56	0	60966..62009	-	347	161620154	-	BCAN_B0067	-	hypothetical protein
61	 56.07	0	62193..62909	-	238	161620155	-	BCAN_B0068	-	P-type DNA transfer protein VirB5
62	 55.49	0	62914..65409	-	831	161620156	-	BCAN_B0069	-	type IV secretion/conjugal transfer ATPase
63	 55.56	0	65409..65759	-	116	161620157	-	BCAN_B0070	-	TraD protein
64	 56.29	0	65773..66090	-	105	161620158	-	BCAN_B0071	-	TraC protein
65	 56.76	0	66526..67242	-	238	161620159	-	BCAN_B0072	-	TraA protein
66	 59.17	0	67746..68972	-	408	161620160	-	BCAN_B0073	-	lytic murein transglycosylase
67	 56.94	0	69384..70277	+	297	161620161	galU	BCAN_B0074	-	UTP-glucose-1-phosphate uridylyltransferase
68	 60.26	0	70330..71874	-	514	161620162	-	BCAN_B0075	-	hypothetical protein
69	 59.58	0	72015..73016	+	333	161620163	-	BCAN_B0076	-	KpsF/GutQ family sugar isomerase
70	 57.48	0	73163..73630	-	155	161620164	-	BCAN_B0077	-	hypothetical protein
71	 58.97	0	73651..74637	-	328	161620165	-	BCAN_B0078	-	band 7 protein
72	 58.07	0	74770..75828	-	352	161620166	hemH	BCAN_B0079	-	ferrochelatase
73	 60.37	0	75966..76346	-	126	161620167	-	BCAN_B0080	-	Outer membrane lipoprotein Omp10
74	 58.16	0	76488..77933	-	481	161620168	hss	BCAN_B0081	-	homospermidine synthase
75	 59.32	0	78045..78725	-	226	161620169	-	BCAN_B0082	-	hypothetical protein
76	 59.32	0	78659..79828	-	389	161620170	pabB	BCAN_B0083	-	para-aminobenzoate synthase component I
77	 56.90	0	79838..81700	-	620	161620171	-	BCAN_B0084	-	pepF/M3 family oligoendopeptidase
78	 64.00	+1	83878..85791	+	637	161620172	-	BCAN_B0086	-	angiomotin
79	 60.98	0	85857..86594	-	245	161620173	eda	BCAN_B0087	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
80	 57.73	0	87396..88313	+	305	161620174	-	BCAN_B0089	-	rhodanese family protein
81	 55.07	0	88348..88554	+	68	161620175	-	BCAN_B0090	-	hypothetical protein
82	 56.75	0	88594..89349	+	251	161620176	modA	BCAN_B0091	-	molybdate ABC transporter, periplasmic molybdate-binding protein
83	 59.97	0	89360..90046	+	228	161620177	modB	BCAN_B0092	-	molybdate ABC transporter permease protein
84	 61.20	0	90043..91122	+	359	161620178	modC	BCAN_B0093	-	molybdate ABC transporter, ATP-binding protein
85	 55.75	0	91192..91869	+	225	161620179	-	BCAN_B0094	-	GCN5-related N-acetyltransferase
86	 55.88	0	91862..92065	+	67	161620180	-	BCAN_B0095	-	hypothetical protein
87	 37.07	-2	92117..92464	-	115	161620181	-	BCAN_B0096	-	hypothetical protein
88	 45.51	-2	92157..92312	+	51	161620182	-	BCAN_B0097	-	hypothetical protein
89	 37.04	-2	92522..92872	-	116	161620183	-	BCAN_B0098	-	hypothetical protein
90	 59.42	0	93014..94117	-	367	161620184	-	BCAN_B0099	-	high-affinity nickel-transporter
91	 54.04	0	94117..94821	-	234	161620185	-	BCAN_B0100	-	hypothetical protein
92	 59.84	0	94861..95754	-	297	161620186	-	BCAN_B0101	-	LysR family transcriptional regulator
93	 60.20	0	95758..96963	-	401	161620187	-	BCAN_B0102	-	amidase
94	 60.05	0	97548..98681	+	377	161620188	ldc	BCAN_B0104	-	lysine/ornithine decarboxylase
95	 59.69	0	98757..100475	-	572	161620189	-	BCAN_B0105	-	lipopolysaccharide biosynthesis protein
96	 38.41	-2	100492..100629	-	45	161620190	-	BCAN_B0106	-	hypothetical protein
97	 55.59	0	100601..101503	-	300	161620191	-	BCAN_B0107	-	hypothetical protein
98	 54.86	0	101461..102222	-	253	161620192	-	BCAN_B0108	-	WecB/TagA/CpsF family glycosyl transferase
99	 56.34	0	102223..103413	-	396	161620193	-	BCAN_B0109	-	hypothetical protein
100	 39.53	-2	103371..103499	+	42	161620194	-	BCAN_B0110	-	hypothetical protein
57.04	MEAN

4.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.