IslandPath Analysis: Pelodictyon phaeoclathratiforme BU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.93   STD DEV: 4.84
Pelodictyon phaeoclathratiforme BU-1, complete genome - 1..3018238
2707 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.55	-1	1..1464	+	487	194335183	-	Ppha_0001	-	chromosomal replication initiator protein DnaA
2	 38.93	-1	1746..2870	+	374	194335184	-	Ppha_0002	-	DNA polymerase III, beta subunit
3	 37.84	-2	2883..3992	+	369	194335185	-	Ppha_0003	-	DNA replication and repair protein RecF
4	 35.37	-2	3995..4288	+	97	194335186	-	Ppha_0004	-	hypothetical protein
5	 39.30	-1	4331..5554	-	407	194335187	-	Ppha_0005	-	beta-lactamase domain protein
6	 39.78	-1	5681..8116	-	811	194335188	-	Ppha_0006	-	DNA polymerase B region
7	 45.93	0	8136..10001	-	621	194335189	-	Ppha_0007	-	glucose inhibited division protein A
8	 28.21	-2	10049..10165	+	38	194335190	-	Ppha_0008	-	hypothetical protein
9	 43.38	0	10466..10903	+	145	194335191	-	Ppha_0009	-	thiosulfate-binding protein SoxY
10	 40.78	-1	10928..11236	+	102	194335192	-	Ppha_0010	-	Sulphur oxidation protein SoxZ
11	 48.53	0	11297..11671	+	124	194335193	-	Ppha_0011	-	cytochrome c class I
12	 48.65	0	11686..12978	+	430	194335194	-	Ppha_0012	-	Flavocytochrome c sulphide dehydrogenase flavin-binding
13	 47.36	0	13137..15011	+	624	194335195	-	Ppha_0013	-	protein-export membrane protein SecD
14	 45.62	0	15033..15968	+	311	194335196	-	Ppha_0014	-	protein-export membrane protein SecF
15	 48.06	0	16068..17384	+	438	194335197	-	Ppha_0015	-	SurA domain
16	 50.67	0	17373..19322	-	649	194335198	-	Ppha_0016	-	DNA gyrase, B subunit
17	 52.97	+1	19407..19793	-	128	194335199	-	Ppha_0017	-	protein of unknown function UPF0102
18	 57.33	+1	19790..20410	-	206	194335200	-	Ppha_0018	-	Ribonuclease H
19	 52.00	0	20484..21158	-	224	194335201	-	Ppha_0019	-	hypothetical protein
20	 47.17	0	21238..21555	-	105	194335202	-	Ppha_0020	-	HicB family protein
21	 43.07	-1	21542..21808	-	88	194335203	-	Ppha_0021	-	HicA protein
22	 43.72	0	22188..22418	-	76	194335204	-	Ppha_0024	-	hypothetical protein
23	 49.50	0	22598..24286	+	562	194335205	-	Ppha_0025	-	ribonuclease, Rne/Rng family
24	 50.35	0	24313..25176	+	287	194335206	-	Ppha_0026	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
25	 50.40	0	25181..26938	+	585	194335207	-	Ppha_0027	-	carboxyl-terminal protease
26	 50.51	0	26929..27615	-	228	194335208	-	Ppha_0028	-	hypothetical protein
27	 50.83	0	27616..28758	-	380	194335209	-	Ppha_0029	-	geranylgeranyl reductase
28	 51.15	0	28762..30237	-	491	194335210	-	Ppha_0030	-	glycyl-tRNA synthetase
29	 49.73	0	30497..30862	+	121	194335211	-	Ppha_0031	-	DsrE family protein
30	 48.06	0	30963..31736	-	257	194335212	-	Ppha_0032	-	protein of unknown function UPF0153
31	 41.27	-1	31720..31908	-	62	194335213	-	Ppha_0033	-	hypothetical protein
32	 45.26	0	31945..32229	+	94	194335214	-	Ppha_0034	-	hypothetical protein
33	 46.36	0	32299..33480	-	393	194335215	-	Ppha_0035	-	heterodisulfide reductase, putative
34	 49.22	0	33575..35827	-	750	194335216	-	Ppha_0036	-	methyl-viologen-reducing hydrogenase delta subunit
35	 47.75	0	35831..37072	-	413	194335217	-	Ppha_0037	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
36	 40.86	-1	37145..37237	-	30	194335218	-	Ppha_0038	-	hypothetical protein
37	 50.38	0	37237..39213	-	658	194335219	-	Ppha_0039	-	adenylylsulfate reductase, alpha subunit
38	 46.10	0	39242..39664	-	140	194335220	-	Ppha_0040	-	adenylylsulfate reductase, beta subunit
39	 48.84	0	39791..41002	-	403	194335221	-	Ppha_0041	-	sulfate adenylyltransferase
40	 47.99	0	41661..42779	-	372	194335222	-	Ppha_0042	-	hypothetical protein
41	 46.88	0	42838..43029	+	63	194335223	-	Ppha_0043	-	hypothetical protein
42	 50.82	0	43098..43583	+	161	194335224	-	Ppha_0044	-	hypothetical protein
43	 50.63	0	43608..43925	-	105	194335225	-	Ppha_0045	-	ATP-dependent Clp protease adaptor protein ClpS
44	 50.88	0	43991..44959	-	322	194335226	-	Ppha_0046	-	Muramoyltetrapeptide carboxypeptidase
45	 46.44	0	45005..45271	-	88	194335227	-	Ppha_0047	-	H+transporting two-sector ATPase delta/epsilon subunit
46	 50.32	0	45287..46675	-	462	194335228	-	Ppha_0048	-	ATP synthase F1, beta subunit
47	 46.04	0	47024..47566	+	180	194335229	-	Ppha_0049	-	Redoxin domain protein
48	 51.35	0	47709..49562	+	617	194335230	-	Ppha_0050	-	Phosphoenolpyruvate carboxykinase (GTP)
49	 49.30	0	49631..49843	-	70	194335231	-	Ppha_0051	-	protein of unknown function DUF1458
50	 48.70	0	49930..50814	-	294	194335232	-	Ppha_0052	-	zinc finger SWIM domain protein
51	 52.35	0	50820..53843	-	1007	194335233	-	Ppha_0053	-	Non-specific serine/threonine protein kinase
52	 40.28	-1	53944..54087	-	47	194335234	-	Ppha_0054	-	hypothetical protein
53	 49.08	0	54217..54762	-	181	194335235	-	Ppha_0055	-	hypothetical protein
54	 54.84	+1	55025..56326	+	433	194335236	-	Ppha_0056	-	major facilitator superfamily MFS_1
55	 43.32	0	56330..57310	-	326	194335237	-	Ppha_0057	-	transcriptional regulator, XRE family
56	 41.44	-1	57264..57695	-	143	194335238	-	Ppha_0058	-	hypothetical protein
57	 50.42	0	58431..59144	+	237	194335239	-	Ppha_0060	-	yecA family protein
58	 48.44	0	59264..59488	-	74	194335240	-	Ppha_0061	-	addiction module component, TIGR02574 family
59	 56.62	+1	60144..61208	-	354	194335241	-	Ppha_0062	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
60	 56.79	+1	61859..63478	-	539	194335242	-	Ppha_0063	-	drug resistance transporter, EmrB/QacA subfamily
61	 54.37	+1	63500..64540	-	346	194335243	-	Ppha_0064	-	secretion protein HlyD family protein
62	 49.54	0	64527..64958	-	143	194335244	-	Ppha_0065	-	UspA domain protein
63	 54.73	+1	64960..66291	-	443	194335245	-	Ppha_0066	-	outer membrane efflux protein
64	 54.24	+1	66499..68598	+	699	194335246	-	Ppha_0067	-	transcriptional regulator, NifA subfamily, Fis Family
65	 54.61	+1	68635..69828	-	397	194335247	-	Ppha_0068	-	putative transcriptional regulator, GntR family
66	 51.28	0	69838..70266	-	142	194335248	-	Ppha_0069	-	amino acid-binding ACT domain protein
67	 49.74	0	70760..72106	+	448	194335249	-	Ppha_0070	-	peptidase M12A astacin
68	 48.48	0	72179..73465	+	428	194335250	-	Ppha_0071	-	Radical SAM domain protein
69	 51.79	0	73517..73879	+	120	194335251	-	Ppha_0072	-	hypothetical protein
70	 54.30	+1	73894..75195	-	433	194335252	-	Ppha_0073	-	Phenylacetate--CoA ligase
71	 56.01	+1	75192..75782	-	196	194335253	-	Ppha_0074	-	pyruvate ferredoxin/flavodoxin oxidoreductase
72	 55.49	+1	75790..77400	-	536	194335254	-	Ppha_0075	-	Indolepyruvate ferredoxin oxidoreductase
73	 45.91	0	77748..79775	+	675	194335255	-	Ppha_0076	-	multi-sensor signal transduction histidine kinase
74	 45.10	0	79809..80420	-	203	194335256	-	Ppha_0077	-	hypothetical protein
75	 53.17	+1	80550..81623	-	357	194335257	-	Ppha_0078	-	peptide chain release factor 1
76	 49.63	0	81642..83003	-	453	194335258	-	Ppha_0079	-	membrane-associated zinc metalloprotease
77	 51.87	0	83094..84242	-	382	194335259	-	Ppha_0080	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
78	 49.62	0	84553..86646	-	697	194335260	-	Ppha_0081	-	ATP-dependent metalloprotease FtsH
79	 48.00	0	86903..87727	+	274	194335261	-	Ppha_0082	-	orotidine 5'-phosphate decarboxylase
80	 49.57	0	87830..89677	+	615	194335262	-	Ppha_0083	-	glucosamine/fructose-6-phosphate aminotransferase, isomerizing
81	 50.21	0	89794..90735	+	313	194335263	-	Ppha_0084	-	domain of unknown function DUF1731
82	 48.80	0	90771..91268	+	165	194335264	-	Ppha_0085	-	Ferritin Dps family protein
83	 47.94	0	91467..92801	+	444	194335265	-	Ppha_0086	-	ammonium transporter
84	 47.08	0	92811..93152	+	113	194335266	-	Ppha_0087	-	nitrogen regulatory protein P-II
85	 48.39	0	93212..93769	-	185	194335267	-	Ppha_0088	-	Tetratricopeptide TPR_2 repeat protein
86	 52.00	0	94003..95277	+	424	194335268	-	Ppha_0089	-	hypothetical protein
87	 52.97	+1	95287..95724	+	145	194335269	-	Ppha_0090	-	protein of unknown function UPF0079
88	 55.95	+1	95724..96395	+	223	194335270	-	Ppha_0091	-	peptidase M22 glycoprotease
89	 43.10	0	96522..97412	-	296	194335271	-	Ppha_0092	-	hypothetical protein
90	 40.42	-1	97887..98126	+	79	194335272	-	Ppha_0093	-	hypothetical protein
91	 39.71	-1	98123..98530	+	135	194335273	-	Ppha_0094	-	hypothetical protein
92	 47.73	0	98858..99253	+	131	194335274	-	Ppha_0095	-	iojap-like protein
93	 50.72	0	99376..101859	+	827	194335275	-	Ppha_0096	-	DNA gyrase, A subunit
94	 49.29	0	101966..103663	+	565	194335276	-	Ppha_0097	-	CTP synthase
95	 41.95	-1	109304..109570	+	88	194335277	-	Ppha_0098	-	hypothetical protein
96	 52.28	0	109679..110380	+	233	194335278	-	Ppha_0099	-	PHP domain protein
97	 58.21	+2	110428..112626	-	732	194335279	-	Ppha_0100	-	catalase/peroxidase HPI
98	 52.14	0	112903..113322	-	139	194335280	-	Ppha_0101	-	ferric uptake regulator, Fur family
99	 46.86	0	113611..114216	+	201	194335281	-	Ppha_0102	-	hypothetical protein
100	 47.08	0	114244..114585	-	113	194335282	-	Ppha_0103	-	transcriptional coactivator/pterin dehydratase
47.93	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.