IslandPath Analysis: Streptomyces coelicolor A3(2)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.07   STD DEV: 3.61
Streptomyces coelicolor A3(2), complete genome - 1..8667507
7769 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 71.09	0	446..1123	+	225	21218583	-	SCO0001	-	hypothetical protein
2	 70.73	0	1252..3813	+	853	21218584	-	SCO0002	-	hypothetical protein
3	 68.49	0	3869..6220	+	783	21218585	-	SCO0003	-	DNA-binding protein
4	 72.36	0	6226..7173	+	315	21226092	-	SCO0004	-	hypothetical protein
5	 70.82	0	7187..9307	+	706	32141096	-	SCO0005	-	transposase
6	 71.82	0	9304..10410	+	368	21226090	-	SCO0006	-	ATP/GTP-binding protein
7	 74.05	0	10554..11000	-	148	21218589	-	SCO0007	-	hypothetical protein
8	 72.36	0	11010..11360	-	116	21218590	-	SCO0008	-	hypothetical protein
9	 66.07	-1	11617..11952	-	111	21218591	-	SCO0009	-	hypothetical protein
10	 68.96	0	12366..13457	+	363	21218592	-	SCO0010	-	hypothetical protein
11	 70.86	0	13214..14023	-	269	21218593	-	SCO0011	-	hypothetical protein
12	 72.51	0	14044..14454	-	136	21218594	-	SCO0012	-	hypothetical protein
13	 73.20	0	14739..15029	-	96	21218595	-	SCO0013	-	hypothetical protein
14	 69.18	0	15317..15595	-	92	21218596	-	SCO0014	-	hypothetical protein
15	 72.83	0	16070..17302	-	410	21218597	-	SCO0015	-	Na+/H+ antiporter
16	 78.92	+1	17715..17918	+	67	21218598	-	SCO0016	-	hypothetical protein
17	 74.20	0	17919..18263	+	114	21218599	-	SCO0017	-	hypothetical protein
18	 68.74	0	18485..19351	-	288	21218600	-	SCO0018	-	hypothetical protein
19	 63.14	-2	19517..19771	-	84	21218601	-	SCO0019	-	hypothetical protein
20	 67.15	-1	19974..21620	+	548	32141097	-	SCO0020	-	transposase
21	 63.47	-2	21617..22210	+	197	21218602	-	SCO0021	-	hypothetical protein
22	 67.49	-1	22156..22761	-	140	21218603	-	SCO0022	-	IS element ATP-binding protein
23	 70.32	0	22843..23061	+	72	21218604	-	SCO0025	-	IS element ATP-binding protein
24	 67.25	-1	23316..23831	+	171	21218605	-	SCO0026	-	secreted protein
25	 76.15	+1	23977..24345	-	122	21218606	-	SCO0027	-	hypothetical protein
26	 76.39	+1	24378..24521	-	47	21218607	-	SCO0028	-	hypothetical protein
27	 76.00	+1	24644..24943	+	99	21218608	-	SCO0029	-	hypothetical protein
28	 69.89	0	25251..25871	+	206	21218609	-	SCO0030	-	hypothetical protein
29	 69.80	0	25843..26385	-	180	21218610	-	SCO0031	-	hypothetical protein
30	 61.67	-2	26393..26452	-	19	21218611	-	SCO0032	-	hypothetical protein
31	 69.69	0	26527..28773	-	748	21218612	-	SCO0033	-	secreted neuraminidase
32	 66.67	-1	29040..29519	+	159	21218613	-	SCO0034	-	hypothetical protein
33	 61.11	-2	29605..30054	-	149	21218614	-	SCO0035	-	hypothetical protein
34	 66.67	-1	30116..30355	-	79	21218615	-	SCO0036	-	hypothetical protein
35	 71.18	0	30379..31131	-	250	21218616	-	SCO0037	-	sigma factor
36	 67.44	-1	31146..31274	-	42	21218617	-	SCO0038	-	sigma factor
37	 74.27	0	31520..32137	+	205	21218618	-	SCO0039	-	hypothetical protein
38	 72.30	0	32134..33357	+	407	21218619	-	SCO0040	-	glycosyl transferase
39	 74.28	0	33360..33845	+	161	21218620	-	SCO0041	-	integral membrane protein
40	 72.22	0	33842..34777	+	311	21218621	-	SCO0042	-	hypothetical protein
41	 68.45	-1	35179..35907	-	242	21218622	-	SCO0043	-	hypothetical protein
42	 69.66	0	36006..36674	-	222	21218623	-	SCO0044	-	oxidoreductase
43	 56.59	-2	36689..36817	-	42	21218624	-	SCO0045	-	hypothetical protein
44	 69.98	0	36816..37478	+	220	21218625	-	SCO0046	-	hydrolase
45	 71.69	0	37614..38768	-	384	21218626	-	SCO0047	-	transcriptional regulator
46	 67.19	-1	39107..39490	-	127	21218627	-	SCO0048	-	hypothetical protein
47	 64.20	-2	39489..39812	+	107	21218628	-	SCO0049	-	hypothetical protein
48	 63.99	-2	39877..40212	+	111	21218629	-	SCO0050	-	hypothetical protein
49	 66.27	-1	42171..43682	-	503	21218630	-	SCO0055	-	membrane-associated oxidoreductase
50	 64.44	-2	43768..43857	+	29	21218631	-	SCO0056	-	hypothetical protein
51	 75.89	+1	43950..44090	+	46	21218632	-	SCO0057	-	hypothetical protein
52	 70.82	0	44253..44975	+	240	21218633	-	SCO0058	-	hypothetical protein
53	 72.00	0	45267..46073	+	268	21218634	-	SCO0059	-	zinc-binding oxidoreductase
54	 76.09	+1	46064..46201	+	45	21218635	-	SCO0060	-	hypothetical protein
55	 69.20	0	46430..47734	-	434	21218636	-	SCO0061	-	hypothetical protein
56	 70.47	0	47789..48892	-	367	21218637	-	SCO0062	-	LacI family transcriptional regulator
57	 74.79	0	48889..49824	-	311	21218638	-	SCO0063	-	glucokinase
58	 72.02	0	49821..51539	-	572	21218639	-	SCO0064	-	hypothetical protein
59	 70.02	0	51831..53144	+	437	21218640	-	SCO0065	-	extracellular binding protein
60	 69.48	0	53141..54100	+	319	21218641	-	SCO0066	-	integral membrane permease
61	 66.42	-1	54097..54918	+	273	21218642	-	SCO0067	-	integral membrane permease
62	 72.31	0	54968..56173	+	401	21218643	-	SCO0068	-	hydrolase (secreted protein)
63	 72.65	0	56225..59383	+	1052	21218644	-	SCO0069	-	hypothetical protein
64	 71.05	0	59558..60241	+	227	21218645	-	SCO0070	-	hypothetical protein
65	 69.08	0	60069..60275	-	68	21218646	-	SCO0071	-	hypothetical protein
66	 67.29	-1	60740..64093	-	1117	32141098	-	SCO0072	-	secreted protein
67	 69.78	0	64605..64925	+	106	21218647	-	SCO0073	-	hypothetical protein
68	 71.72	0	64994..65092	+	32	21218648	-	SCO0074	-	hypothetical protein
69	 71.09	0	65092..65679	+	195	21218649	-	SCO0075	-	hypothetical protein
70	 62.83	-2	66688..67911	-	407	21218650	-	SCO0079	-	integral membrane transport protein
71	 64.53	-2	68372..68887	+	171	21218651	-	SCO0080	-	hypothetical protein
72	 70.44	0	69799..70647	+	282	21218652	-	SCO0083	-	transposase
73	 63.62	-2	70777..71235	+	152	21218653	-	SCO0084	-	hypothetical protein
74	 71.95	0	71648..72139	-	163	21218654	-	SCO0085	-	hypothetical protein
75	 69.86	0	72159..73097	-	312	21218655	-	SCO0086	-	ribosylglycohydrolase (secreted protein)
76	 68.38	-1	73784..74833	-	349	21218656	-	SCO0087	-	secreted protein
77	 68.85	0	74917..75876	-	319	21218657	-	SCO0088	-	secreted beta-lactamase
78	 70.13	0	75856..76893	+	345	21218658	-	SCO0089	-	transcriptional regulator
79	 62.38	-2	76895..77314	-	139	21218659	-	SCO0090	-	transposase
80	 71.26	0	77315..78271	+	318	21218660	-	SCO0091	-	IS1652 transposase
81	 70.56	0	78983..79702	-	239	21218661	-	SCO0095	-	hypothetical protein
82	 69.84	0	79839..80690	-	283	21218662	-	SCO0096	-	noncomposite transposon transposase
83	 65.11	-1	80845..81165	-	106	21218663	-	SCO0097	-	integral membrane protein
84	 63.10	-2	81602..82441	-	279	21218664	-	SCO0098	-	transposase
85	 68.55	0	83516..83992	-	158	161353684	-	SCO0101	-	hypothetical protein
86	 68.90	0	84893..85339	+	148	21218666	-	SCO0102	-	hypothetical protein
87	 68.27	-1	85336..86643	+	435	21218667	-	SCO0103	-	flavohemoprotein
88	 68.15	-1	86640..87311	+	223	21218668	-	SCO0104	-	hydrolase
89	 64.74	-2	87907..88632	-	241	21218669	-	SCO0105	-	endo-1,4-beta-xylanase (secreted protein)
90	 70.48	0	89073..89465	+	130	21218670	-	SCO0106	-	insertion element transposase
91	 63.98	-2	89486..90043	-	185	21218671	-	SCO0107	-	aminoglycoside nucleotidyltransferase
92	 62.00	-2	90242..90391	+	49	21218672	-	SCO0108	-	hypothetical protein
93	 68.79	0	90395..90865	-	156	21218673	-	SCO0109	-	hypothetical protein
94	 70.00	0	90951..91790	-	279	21218674	-	SCO0110	-	DNA-binding protein
95	 69.06	0	91977..92729	+	250	21218675	-	SCO0111	-	oxidoreductase
96	 69.87	0	92773..92928	-	51	21218676	-	SCO0112	-	hypothetical protein
97	 71.60	0	94306..94872	-	188	21218677	-	SCO0116	-	TetR family transcriptional regulator
98	 70.13	0	94989..95681	+	230	21218678	-	SCO0117	-	short chain dehydrogenase
99	 71.18	0	95989..97518	+	509	21218679	-	SCO0118	-	xylosidase/arabinosidase
100	 68.01	-1	97760..98281	-	173	21218680	-	SCO0119	-	small secreted protein
72.07	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.