IslandPath Analysis: Helicobacter pylori J99



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.55   STD DEV: 3.47
Helicobacter pylori J99, complete genome - 1..1643831
1489 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.01	0	51..467	-	138	15611072	nusB	jhp0001	-	transcription antitermination protein NusB
2	 44.80	+1	469..939	-	156	15611073	ribH	jhp0002	-	riboflavin synthase subunit beta
3	 42.72	0	949..1779	-	276	15611074	kdsA	jhp0003	-	2-dehydro-3-deoxyphosphooctonate aldolase
4	 39.19	0	1766..2431	-	221	15611075	icfA	jhp0004	-	carbonic anhydrase
5	 39.91	0	2552..3235	+	227	15611076	pyrF	jhp0005	-	orotidine 5'-phosphate decarboxylase
6	 43.44	+1	3235..4065	+	276	15611077	panC	jhp0006	-	pantoate--beta-alanine ligase
7	 43.23	+1	5436..7443	-	668	15611078	-	jhp0007	-	putative Outer membrane protein
8	 45.83	+1	7758..9398	-	546	15611079	groEL	jhp0008	-	chaperonin GroEL
9	 40.90	0	9423..9779	-	118	15611080	groES	jhp0009	-	co-chaperonin GroES
10	 39.29	0	10067..11746	+	559	15611081	dnaG	jhp0010	-	DNA primase
11	 40.93	0	11743..12795	+	350	15611082	-	jhp0011	-	hypothetical protein
12	 38.53	0	12885..13712	+	275	15611083	-	jhp0012	-	hypothetical protein
13	 39.36	0	13859..14140	+	93	15611084	-	jhp0013	-	hypothetical protein
14	 32.95	-1	14140..14403	+	87	15611085	-	jhp0014	-	hypothetical protein
15	 37.35	0	14405..16768	+	787	15611086	virB4_1	jhp0015	-	DNA transfer protein
16	 40.00	0	17008..18417	+	469	15611087	-	jhp0016	-	hypothetical protein
17	 41.20	0	18524..19489	+	321	15611088	cheV_1	jhp0017	-	putative chemotaxis protein
18	 43.84	+1	19486..20703	+	405	15611089	nspC	jhp0018	-	putative carboxynorspermidine decarboxylase
19	 44.10	+1	20764..21339	-	191	15611090	-	jhp0019	-	lipid A 1-phosphatase
20	 40.46	0	21350..22921	-	523	15611091	-	jhp0020	-	lipid A phosphoethanolamine transferase
21	 45.01	+1	23538..25610	-	690	15611092	-	jhp0021	-	putative Outer membrane protein
22	 44.57	+1	26315..27595	-	426	15611093	gltA	jhp0022	-	type II citrate synthase
23	 43.74	+1	27796..29073	+	425	15611094	icd	jhp0023	-	isocitrate dehydrogenase
24	 38.26	0	29138..29665	+	175	15611095	-	jhp0024	-	hypothetical protein
25	 38.81	0	29642..30298	-	218	15611096	bioD	jhp0025	-	dethiobiotin synthetase
26	 35.57	-1	30302..31999	-	565	15611097	-	jhp0026	-	hypothetical protein
27	 38.65	0	32111..32524	+	137	15611098	-	jhp0027	-	hypothetical protein
28	 41.39	0	32526..32798	+	90	15611099	-	jhp0028	-	hypothetical protein
29	 39.66	0	32798..35026	+	742	15611100	clpA	jhp0029	-	ATP-dependent protease,ATP-binding subunit
30	 41.81	0	35016..35369	+	117	15611101	panD	jhp0030	-	aspartate alpha-decarboxylase
31	 41.91	0	35372..35674	+	100	15611102	-	jhp0031	-	hypothetical protein
32	 40.38	0	35671..36678	+	335	15611103	-	jhp0032	-	hypothetical protein
33	 39.49	0	36686..37741	+	351	15611104	-	jhp0033	-	hypothetical protein
34	 41.94	0	37867..38610	+	247	15611105	comB1	jhp0034	-	DNA transformation competancy
35	 35.87	-1	38610..39596	+	328	15611106	comB2	jhp0035	-	DNA transformation compentancy
36	 42.44	0	39589..40719	+	376	15611107	comB3	jhp0036	-	DNA transformation compentancy
37	 38.92	0	40789..42201	+	470	15611108	manC	jhp0037	-	phosphomannose isomerase/GDP-mannose pyrophosphorylase
38	 42.15	0	42242..43387	+	381	15611109	gmd	jhp0038	-	GDP-D-mannose dehydratase
39	 40.73	0	43380..44312	+	310	15611110	-	jhp0039	-	putative sugar nucleotide biosynthesis
40	 42.94	0	45190..46188	-	332	15611111	hypE	jhp0040	-	hydrogenase expression/formation protein
41	 41.82	0	46191..48464	-	757	15611112	-	jhp0041	-	putative transcriptional regulator
42	 40.48	0	48440..49432	-	330	15611113	-	jhp0042	-	hypothetical protein
43	 39.68	0	49491..50183	-	230	15611114	-	jhp0043	-	putative type II DNA modification enzyme (methyltransferase)
44	 38.17	0	50161..50718	-	185	15611115	-	jhp0044	-	putative type II DNA modification enzyme (methyltransferase)
45	 32.56	-2	51152..52183	-	343	15611116	-	jhp0045	-	putative type II DNA modification enzyme (methyltransferase)
46	 31.67	-2	52193..52975	-	260	15611117	-	jhp0046	-	putative type II restriction enzyme
47	 42.32	0	53403..54893	-	496	15611118	putP	jhp0047	-	sodium/proline symporter
48	 40.56	0	54920..58477	-	1185	15611119	putA	jhp0048	-	proline/pyrroline-5-carboxylate dehydrogenase
49	 39.05	0	58798..59007	+	69	15611120	-	jhp0049	-	hypothetical protein
50	 33.48	-1	59335..59997	+	220	15611121	-	jhp0050	-	hypothetical protein
51	 35.81	-1	60127..60489	+	120	15611122	-	jhp0051	-	hypothetical protein
52	 40.24	0	60490..61473	+	327	15611123	-	jhp0052	-	hypothetical protein
53	 37.73	0	61484..61915	+	143	15611124	-	jhp0053	-	hypothetical protein
54	 39.90	0	62096..63664	+	522	15611125	-	jhp0054	-	hypothetical protein
55	 41.77	0	63665..63901	+	78	15611126	-	jhp0055	-	hypothetical protein
56	 40.00	0	63898..64467	+	189	15611127	-	jhp0056	-	hypothetical protein
57	 40.23	0	64483..64743	+	86	15611128	-	jhp0057	-	hypothetical protein
58	 39.25	0	64754..66256	+	500	15611129	-	jhp0058	-	hypothetical protein
59	 35.95	-1	66226..66645	+	139	15611130	-	jhp0059	-	hypothetical protein
60	 40.68	0	66647..67000	+	117	15611131	-	jhp0060	-	hypothetical protein
61	 40.07	0	66993..69413	+	806	15611132	-	jhp0061	-	hypothetical protein
62	 43.73	+1	69487..70284	-	265	15611133	ureH	jhp0062	-	urease accessory protein
63	 44.33	+1	70284..70883	-	199	15611134	ureG	jhp0063	-	urease accessory protein
64	 41.37	0	70912..71682	-	256	15611135	ureF	jhp0064	-	urease accessory protein
65	 40.74	0	71706..72218	-	170	15611136	ureE	jhp0065	-	urease accessory protein UreE
66	 44.05	+1	72220..72807	-	195	15611137	ureI	jhp0066	-	urea transporter
67	 44.91	+1	73031..74740	-	569	15611138	ureC	jhp0067	-	urease subunit alpha
68	 42.26	0	74744..75460	-	238	15611139	ureA	jhp0068	-	bifunctional urease subunit gamma/beta
69	 36.38	0	75814..76305	-	163	15611140	lspA	jhp0069	-	lipoprotein signal peptidase
70	 42.38	0	76299..77636	-	445	15611141	glmM	jhp0070	-	phosphoglucosamine mutase
71	 39.63	0	77726..77995	+	89	15611142	rpsT	jhp0071	-	30S ribosomal protein S20
72	 43.06	+1	78114..79172	+	352	15611143	prfA	jhp0072	-	peptide chain release factor 1
73	 42.71	0	79586..80353	+	255	15611144	-	jhp0073	-	putative Outer membrane protein
74	 42.75	0	80604..82376	+	590	15611145	-	jhp0074	-	hypothetical protein
75	 38.72	0	82800..84821	-	673	15611146	-	jhp0075	-	methyl-accepting chemotaxis protein (MCP)
76	 42.31	0	84971..85360	-	129	15611147	rpsI	jhp0076	-	30S ribosomal protein S9
77	 41.55	0	85357..85782	-	141	15611148	rplM	jhp0077	-	50S ribosomal protein L13
78	 35.45	-1	86134..86322	-	62	15611149	-	jhp0078	-	hypothetical protein
79	 41.02	0	86329..87681	-	450	15611150	-	jhp0079	-	hypothetical protein
80	 40.90	0	87735..89108	-	457	15611151	-	jhp0080	-	hypothetical protein
81	 39.98	0	89128..91173	-	681	15611152	rpoD	jhp0081	-	RNA polymerase sigma factor RpoD
82	 42.42	0	91396..92088	-	230	15611153	-	jhp0082	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
83	 43.12	+1	92102..93031	-	309	15611154	fabD	jhp0083	-	acyl-carrier-protein S-malonyltransferase
84	 39.45	0	94286..95119	+	277	15611155	-	jhp0085	-	type II DNA modification (methyltransferase
85	 40.95	0	95139..96039	-	299	15611156	-	jhp0086	-	putative alpha(1,2)fucosyltransferase
86	 37.48	0	96135..96665	-	176	15611157	-	jhp0087	-	hypothetical protein
87	 39.47	0	96738..97682	+	314	15611158	-	jhp0088	-	2-hydroxyacid dehydrogenase
88	 40.76	0	97806..98519	-	237	15611159	-	jhp0089	-	hypothetical protein
89	 41.20	0	98623..100083	-	486	15611160	thrC	jhp0090	-	threonine synthase
90	 40.24	0	100277..102304	+	675	15611161	-	jhp0091	-	methyl-accepting chemotaxis protein (MCP)
91	 38.93	0	102304..103410	+	368	15611162	-	jhp0092	-	hypothetical protein
92	 35.96	-1	103627..104388	+	253	15611163	-	jhp0093	-	hypothetical protein
93	 37.93	0	104371..105153	-	260	15611164	-	jhp0094	-	hypothetical protein
94	 41.65	0	105185..106879	-	564	15611165	-	jhp0095	-	methyl-accepting chemotaxis protein (MCP)
95	 40.84	0	107095..108840	-	581	15611166	cpdB	jhp0096	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
96	 44.88	+1	108981..109439	-	152	15611167	-	jhp0097	-	S-ribosylhomocysteinase
97	 47.86	+2	109477..110619	-	380	15611168	metB	jhp0098	-	cystathionine gamma-synthase/cystathionine beta-lyase
98	 46.19	+1	110644..111561	-	305	15611169	cysK	jhp0099	-	cysteine synthase
99	 40.74	0	111680..112138	+	152	15611170	-	jhp0100	-	hypothetical protein
100	 43.26	+1	112512..114374	-	620	15611171	dnaK	jhp0101	-	molecular chaperone DnaK
39.55	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.