version 1.0
Helicobacter pylori J99, complete genome - 1..1643831 1489 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 41.01 0 51..467 - 138 15611072 nusB jhp0001 - transcription antitermination protein NusB 2 44.80 +1 469..939 - 156 15611073 ribH jhp0002 - riboflavin synthase subunit beta 3 42.72 0 949..1779 - 276 15611074 kdsA jhp0003 - 2-dehydro-3-deoxyphosphooctonate aldolase 4 39.19 0 1766..2431 - 221 15611075 icfA jhp0004 - carbonic anhydrase 5 39.91 0 2552..3235 + 227 15611076 pyrF jhp0005 - orotidine 5'-phosphate decarboxylase 6 43.44 +1 3235..4065 + 276 15611077 panC jhp0006 - pantoate--beta-alanine ligase 7 43.23 +1 5436..7443 - 668 15611078 - jhp0007 - putative Outer membrane protein 8 45.83 +1 7758..9398 - 546 15611079 groEL jhp0008 - chaperonin GroEL 9 40.90 0 9423..9779 - 118 15611080 groES jhp0009 - co-chaperonin GroES 10 39.29 0 10067..11746 + 559 15611081 dnaG jhp0010 - DNA primase 11 40.93 0 11743..12795 + 350 15611082 - jhp0011 - hypothetical protein 12 38.53 0 12885..13712 + 275 15611083 - jhp0012 - hypothetical protein 13 39.36 0 13859..14140 + 93 15611084 - jhp0013 - hypothetical protein 14 32.95 -1 14140..14403 + 87 15611085 - jhp0014 - hypothetical protein 15 37.35 0 14405..16768 + 787 15611086 virB4_1 jhp0015 - DNA transfer protein 16 40.00 0 17008..18417 + 469 15611087 - jhp0016 - hypothetical protein 17 41.20 0 18524..19489 + 321 15611088 cheV_1 jhp0017 - putative chemotaxis protein 18 43.84 +1 19486..20703 + 405 15611089 nspC jhp0018 - putative carboxynorspermidine decarboxylase 19 44.10 +1 20764..21339 - 191 15611090 - jhp0019 - lipid A 1-phosphatase 20 40.46 0 21350..22921 - 523 15611091 - jhp0020 - lipid A phosphoethanolamine transferase 21 45.01 +1 23538..25610 - 690 15611092 - jhp0021 - putative Outer membrane protein 22 44.57 +1 26315..27595 - 426 15611093 gltA jhp0022 - type II citrate synthase 23 43.74 +1 27796..29073 + 425 15611094 icd jhp0023 - isocitrate dehydrogenase 24 38.26 0 29138..29665 + 175 15611095 - jhp0024 - hypothetical protein 25 38.81 0 29642..30298 - 218 15611096 bioD jhp0025 - dethiobiotin synthetase 26 35.57 -1 30302..31999 - 565 15611097 - jhp0026 - hypothetical protein 27 38.65 0 32111..32524 + 137 15611098 - jhp0027 - hypothetical protein 28 41.39 0 32526..32798 + 90 15611099 - jhp0028 - hypothetical protein 29 39.66 0 32798..35026 + 742 15611100 clpA jhp0029 - ATP-dependent protease,ATP-binding subunit 30 41.81 0 35016..35369 + 117 15611101 panD jhp0030 - aspartate alpha-decarboxylase 31 41.91 0 35372..35674 + 100 15611102 - jhp0031 - hypothetical protein 32 40.38 0 35671..36678 + 335 15611103 - jhp0032 - hypothetical protein 33 39.49 0 36686..37741 + 351 15611104 - jhp0033 - hypothetical protein 34 41.94 0 37867..38610 + 247 15611105 comB1 jhp0034 - DNA transformation competancy 35 35.87 -1 38610..39596 + 328 15611106 comB2 jhp0035 - DNA transformation compentancy 36 42.44 0 39589..40719 + 376 15611107 comB3 jhp0036 - DNA transformation compentancy 37 38.92 0 40789..42201 + 470 15611108 manC jhp0037 - phosphomannose isomerase/GDP-mannose pyrophosphorylase 38 42.15 0 42242..43387 + 381 15611109 gmd jhp0038 - GDP-D-mannose dehydratase 39 40.73 0 43380..44312 + 310 15611110 - jhp0039 - putative sugar nucleotide biosynthesis 40 42.94 0 45190..46188 - 332 15611111 hypE jhp0040 - hydrogenase expression/formation protein 41 41.82 0 46191..48464 - 757 15611112 - jhp0041 - putative transcriptional regulator 42 40.48 0 48440..49432 - 330 15611113 - jhp0042 - hypothetical protein 43 39.68 0 49491..50183 - 230 15611114 - jhp0043 - putative type II DNA modification enzyme (methyltransferase) 44 38.17 0 50161..50718 - 185 15611115 - jhp0044 - putative type II DNA modification enzyme (methyltransferase) 45 32.56 -2 51152..52183 - 343 15611116 - jhp0045 - putative type II DNA modification enzyme (methyltransferase) 46 31.67 -2 52193..52975 - 260 15611117 - jhp0046 - putative type II restriction enzyme 47 42.32 0 53403..54893 - 496 15611118 putP jhp0047 - sodium/proline symporter 48 40.56 0 54920..58477 - 1185 15611119 putA jhp0048 - proline/pyrroline-5-carboxylate dehydrogenase 49 39.05 0 58798..59007 + 69 15611120 - jhp0049 - hypothetical protein 50 33.48 -1 59335..59997 + 220 15611121 - jhp0050 - hypothetical protein 51 35.81 -1 60127..60489 + 120 15611122 - jhp0051 - hypothetical protein 52 40.24 0 60490..61473 + 327 15611123 - jhp0052 - hypothetical protein 53 37.73 0 61484..61915 + 143 15611124 - jhp0053 - hypothetical protein 54 39.90 0 62096..63664 + 522 15611125 - jhp0054 - hypothetical protein 55 41.77 0 63665..63901 + 78 15611126 - jhp0055 - hypothetical protein 56 40.00 0 63898..64467 + 189 15611127 - jhp0056 - hypothetical protein 57 40.23 0 64483..64743 + 86 15611128 - jhp0057 - hypothetical protein 58 39.25 0 64754..66256 + 500 15611129 - jhp0058 - hypothetical protein 59 35.95 -1 66226..66645 + 139 15611130 - jhp0059 - hypothetical protein 60 40.68 0 66647..67000 + 117 15611131 - jhp0060 - hypothetical protein 61 40.07 0 66993..69413 + 806 15611132 - jhp0061 - hypothetical protein 62 43.73 +1 69487..70284 - 265 15611133 ureH jhp0062 - urease accessory protein 63 44.33 +1 70284..70883 - 199 15611134 ureG jhp0063 - urease accessory protein 64 41.37 0 70912..71682 - 256 15611135 ureF jhp0064 - urease accessory protein 65 40.74 0 71706..72218 - 170 15611136 ureE jhp0065 - urease accessory protein UreE 66 44.05 +1 72220..72807 - 195 15611137 ureI jhp0066 - urea transporter 67 44.91 +1 73031..74740 - 569 15611138 ureC jhp0067 - urease subunit alpha 68 42.26 0 74744..75460 - 238 15611139 ureA jhp0068 - bifunctional urease subunit gamma/beta 69 36.38 0 75814..76305 - 163 15611140 lspA jhp0069 - lipoprotein signal peptidase 70 42.38 0 76299..77636 - 445 15611141 glmM jhp0070 - phosphoglucosamine mutase 71 39.63 0 77726..77995 + 89 15611142 rpsT jhp0071 - 30S ribosomal protein S20 72 43.06 +1 78114..79172 + 352 15611143 prfA jhp0072 - peptide chain release factor 1 73 42.71 0 79586..80353 + 255 15611144 - jhp0073 - putative Outer membrane protein 74 42.75 0 80604..82376 + 590 15611145 - jhp0074 - hypothetical protein 75 38.72 0 82800..84821 - 673 15611146 - jhp0075 - methyl-accepting chemotaxis protein (MCP) 76 42.31 0 84971..85360 - 129 15611147 rpsI jhp0076 - 30S ribosomal protein S9 77 41.55 0 85357..85782 - 141 15611148 rplM jhp0077 - 50S ribosomal protein L13 78 35.45 -1 86134..86322 - 62 15611149 - jhp0078 - hypothetical protein 79 41.02 0 86329..87681 - 450 15611150 - jhp0079 - hypothetical protein 80 40.90 0 87735..89108 - 457 15611151 - jhp0080 - hypothetical protein 81 39.98 0 89128..91173 - 681 15611152 rpoD jhp0081 - RNA polymerase sigma factor RpoD 82 42.42 0 91396..92088 - 230 15611153 - jhp0082 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 83 43.12 +1 92102..93031 - 309 15611154 fabD jhp0083 - acyl-carrier-protein S-malonyltransferase 84 39.45 0 94286..95119 + 277 15611155 - jhp0085 - type II DNA modification (methyltransferase 85 40.95 0 95139..96039 - 299 15611156 - jhp0086 - putative alpha(1,2)fucosyltransferase 86 37.48 0 96135..96665 - 176 15611157 - jhp0087 - hypothetical protein 87 39.47 0 96738..97682 + 314 15611158 - jhp0088 - 2-hydroxyacid dehydrogenase 88 40.76 0 97806..98519 - 237 15611159 - jhp0089 - hypothetical protein 89 41.20 0 98623..100083 - 486 15611160 thrC jhp0090 - threonine synthase 90 40.24 0 100277..102304 + 675 15611161 - jhp0091 - methyl-accepting chemotaxis protein (MCP) 91 38.93 0 102304..103410 + 368 15611162 - jhp0092 - hypothetical protein 92 35.96 -1 103627..104388 + 253 15611163 - jhp0093 - hypothetical protein 93 37.93 0 104371..105153 - 260 15611164 - jhp0094 - hypothetical protein 94 41.65 0 105185..106879 - 564 15611165 - jhp0095 - methyl-accepting chemotaxis protein (MCP) 95 40.84 0 107095..108840 - 581 15611166 cpdB jhp0096 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase 96 44.88 +1 108981..109439 - 152 15611167 - jhp0097 - S-ribosylhomocysteinase 97 47.86 +2 109477..110619 - 380 15611168 metB jhp0098 - cystathionine gamma-synthase/cystathionine beta-lyase 98 46.19 +1 110644..111561 - 305 15611169 cysK jhp0099 - cysteine synthase 99 40.74 0 111680..112138 + 152 15611170 - jhp0100 - hypothetical protein 100 43.26 +1 112512..114374 - 620 15611171 dnaK jhp0101 - molecular chaperone DnaK 39.55 MEAN 3.47 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.