IslandPath Analysis: Streptococcus thermophilus LMG 18311



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.42   STD DEV: 3.75
Streptococcus thermophilus LMG 18311, complete genome - 1..1796846
1889 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.92	0	186..1550	+	454	55820104	dnaA	stu0001	-	chromosomal replication initiation protein
2	 35.36	-1	1705..2841	+	378	55820105	dnaN	stu0002	-	DNA polymerase III subunit beta
3	 35.42	-1	2892..3083	+	63	55820106	-	stu0003	-	hypothetical protein
4	 41.49	0	3296..4411	+	371	55820107	-	stu0004	-	translation-associated GTPase
5	 36.49	0	4484..5053	+	189	55820108	pth	stu0005	-	peptidyl-tRNA hydrolase
6	 38.12	0	5046..8552	+	1168	55820109	trcF	stu0006	-	transcription repair coupling factor
7	 34.78	-1	8738..9013	+	91	55820110	-	stu0007	-	hypothetical protein
8	 36.83	0	8997..9368	+	123	55820111	divIC	stu0008	-	MesJ/Ycf62 family cell-cycle protein
9	 36.43	0	9496..10788	+	430	55820112	-	stu0009	-	hypothetical protein
10	 37.05	0	10788..12053	+	421	55820113	-	stu0010	-	cell-cycle protein MesJ/Ycf62 family
11	 36.10	0	12135..12677	+	180	55820114	hpt	stu0011	-	hypoxanthine-guanine phosphoribosyltransferase
12	 39.89	0	12693..14660	+	655	55820115	ftsH	stu0012	-	cell division protein
13	 37.39	0	14678..14899	-	73	55820116	-	stu0013	-	hypothetical protein
14	 38.43	0	14978..15703	-	241	55820117	-	stu0014	-	hypothetical protein
15	 37.54	0	15621..15905	-	94	55820118	-	stu0015	-	hypothetical protein
16	 32.95	-1	15986..16246	+	86	55820119	-	stu0016	-	hypothetical protein
17	 44.87	+1	16446..16601	+	51	55820120	-	stu0017	-	hypothetical protein
18	 38.64	0	16577..16915	+	112	55820121	-	stu0018	-	hypothetical protein
19	 35.79	0	16929..17417	+	162	55820122	-	stu0019	-	hypothetical protein
20	 31.41	-2	24270..25100	+	276	55820123	mreC	stu0020	-	rod shape-determining protein MreC
21	 28.32	-2	25048..25626	+	192	55820124	mreD	stu0021	-	rod shape-determining protein MreD
22	 42.60	0	25711..27135	+	474	55820125	pcsB	stu0022	-	glucan binding protein
23	 38.14	0	27337..28314	+	325	55820126	prsA1	stu0023	-	ribose-phosphate pyrophosphokinase
24	 34.46	-1	28393..28659	-	88	55820127	-	stu0024	-	truncated IS1193 transposase
25	 38.20	0	28782..29048	-	88	55820128	-	stu0025	-	truncated IS1193 transposase
26	 38.23	0	29414..30598	+	394	55820129	araT	stu0026	-	aromatic amino acid aminotransferase
27	 35.27	-1	30585..31358	+	257	55820130	recO	stu0027	-	DNA repair protein RecO
28	 42.99	0	31574..32578	+	334	55820131	plsX	stu0028	-	putative glycerol-3-phosphate acyltransferase PlsX
29	 33.74	-1	32578..32823	+	81	55820132	acpP1	stu0029	-	acyl carrier protein
30	 37.99	0	33109..33816	+	235	55820133	purC	stu0030	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
31	 41.95	0	33848..37597	+	1249	55820134	purL	stu0031	-	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)
32	 42.92	0	37766..39205	+	479	55820135	purF	stu0032	-	amidophosphoribosyltransferase
33	 43.63	+1	39236..40255	+	339	55820136	purM	stu0033	-	phosphoribosylaminoimidazole synthetase
34	 45.59	+1	40255..40809	+	184	55820137	purN	stu0034	-	phosphoribosylglycinamide formyltransferase
35	 43.84	+1	40827..42425	+	532	55820138	purH	stu0035	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
36	 34.86	-1	42596..43054	+	152	55820139	-	stu0036	-	hypothetical protein
37	 34.60	-1	43108..43422	+	104	55820140	-	stu0037	-	hypothetical protein
38	 36.59	0	43472..43717	+	81	55820141	-	stu0038	-	hypothetical protein
39	 46.19	+1	43821..44660	-	279	55820142	cbpD1	stu0039	-	cell wall protein precursor, choline binding protein
40	 47.43	+2	44968..46230	+	420	55820143	purD	stu0040	-	phosphoribosylamine--glycine ligase
41	 48.90	+2	46564..47064	+	166	55820144	purE	stu0041	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
42	 46.34	+1	47051..48142	+	363	55820145	purK	stu0042	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
43	 42.20	0	48335..49090	+	251	55820146	-	stu0043	-	hypothetical protein
44	 35.76	0	49162..49326	+	54	55820147	-	stu0044	-	hypothetical protein
45	 45.19	+1	49605..50903	+	432	55820148	purB	stu0045	-	adenylosuccinate lyase
46	 38.42	0	51414..52454	-	346	55820149	tnp1239	stu0046	-	IS1239 transposase
47	 43.50	+1	53012..54703	-	563	55820150	argS	stu0047	-	arginyl-tRNA synthetase
48	 41.18	0	54828..55286	+	152	55820151	argR	stu0048	-	arginine repressor
49	 42.78	0	55286..55645	+	119	55820152	-	stu0049	-	hypothetical protein
50	 42.52	0	55638..58196	+	852	55820153	mutS1	stu0050	-	DNA mismatch repair protein
51	 43.62	+1	58443..58685	-	80	55820154	-	stu0051	-	hypothetical protein
52	 41.87	0	58699..59073	-	124	55820155	-	stu0052	-	hypothetical protein
53	 34.64	-1	59297..59602	+	101	55820156	-	stu0053	-	hypothetical protein
54	 41.20	0	59654..61597	+	647	55820157	mutL	stu0054	-	DNA mismatch repair protein
55	 32.44	-1	61724..61948	+	74	55820158	-	stu0055	-	hypothetical protein
56	 38.75	0	62100..62690	+	196	55820159	ruvA	stu0056	-	Holliday junction DNA helicase motor protein
57	 36.76	0	62697..63251	+	184	55820160	tag	stu0057	-	3-methyladenine DNA glycosylase I
58	 40.09	0	63347..64618	+	423	55820161	cinA	stu0059	-	competence damage-inducible protein A
59	 41.04	0	64654..65808	+	384	55820162	recA	stu0060	-	recombinase A
60	 32.83	-1	65985..66383	+	132	55820163	spxA	stu0061	-	transcriptional regulator Spx
61	 39.20	0	72791..77185	+	1464	55820164	polC	stu0062	-	DNA polymerase III PolC
62	 42.67	0	77349..78590	+	413	55820165	pepS	stu0063	-	aminopeptidase PepS
63	 39.39	0	78610..78840	+	76	55820166	-	stu0064	-	hypothetical protein
64	 40.30	0	79043..79372	+	109	55820167	-	stu0065	-	MarR family transcriptional regulator
65	 37.86	0	79490..80041	+	183	55820168	-	stu0066	-	hypothetical protein
66	 31.33	-2	80091..80240	-	49	55820169	-	stu0067	-	hypothetical protein
67	 36.32	0	80345..80578	-	77	55820170	-	stu0068	-	hypothetical protein
68	 38.64	0	80592..80855	-	87	55820171	-	stu0069	-	hypothetical protein
69	 34.07	-1	80982..81254	-	90	55820172	-	stu0070	-	hypothetical protein
70	 42.01	0	81472..81909	-	145	55820173	-	stu0071	-	bacteriocin self-immunity protein, putative, truncated
71	 39.31	0	81906..82424	-	172	55820174	-	stu0072	-	bacteriocin self-immunity protein, putative, truncated
72	 41.67	0	82947..83714	+	255	55820175	rpsB	stu0073	-	30S ribosomal protein S2
73	 40.63	0	83825..84865	+	346	161611302	tsf	stu0074	-	elongation factor Ts
74	 46.28	+1	84976..85446	-	156	55820177	-	stu0075	-	hypothetical protein
75	 39.91	0	85690..86145	+	151	55820178	ctsR	stu0076	-	transcriptional regulator of class III stress genes (heat shock response)
76	 42.68	0	86146..88596	+	816	55820179	clpC	stu0077	-	ATP-dependent Clp protease, ATP-binding subunit
77	 41.73	0	88724..89545	-	273	55820180	-	stu0078	-	D-alanyl-D-alanine carboxypeptidase, truncated
78	 44.64	+1	89607..89774	-	55	55820181	-	stu0079	-	D-alanyl-D-alanine carboxypeptidase, truncated
79	 40.43	0	90127..91395	-	422	55820182	dacA1	stu0080	-	D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
80	 43.44	+1	91583..93808	+	741	55820183	pnpA	stu0081	-	polynucleotide phosphorylase/polyadenylase
81	 40.99	0	93817..94587	+	256	55820184	-	stu0082	-	hypothetical protein
82	 44.92	+1	94651..95280	+	209	55820185	cysE1	stu0083	-	serine acetyltransferase
83	 40.55	0	95662..97005	+	447	55820186	cysS	stu0084	-	cysteinyl-tRNA synthetase
84	 40.30	0	96998..97399	+	133	55820187	-	stu0085	-	hypothetical protein
85	 32.05	-1	97682..97837	+	51	55820188	-	stu0086	-	hypothetical protein
86	 45.50	+1	97913..98101	+	62	55820189	-	stu0087	-	hypothetical protein
87	 42.61	0	98463..99206	+	247	55820190	trmH	stu0088	-	tRNA/rRNA methyltransferase
88	 39.53	0	99209..99724	+	171	55820191	-	stu0089	-	hypothetical protein
89	 42.74	0	99733..100593	+	286	55820192	-	stu0090	-	hypothetical protein
90	 34.18	-1	100894..101364	+	156	55820193	-	stu0091	-	hypothetical protein
91	 38.66	0	101543..102499	+	318	55820194	panE	stu0092	-	2-dehydropantoate 2-reductase (ketopantoate reductase)
92	 40.94	0	102708..103154	+	148	55820195	rplM	stu0093	-	50S ribosomal protein L13
93	 45.80	+1	103182..103574	+	130	55820196	rpsI	stu0094	-	30S ribosomal protein S9
94	 37.86	0	103734..103976	-	80	55820197	-	stu0095	-	integrase/recombinase, putative, truncated
95	 37.88	0	104051..104314	+	87	55820198	-	stu0096	-	transcriptional regulator, putative, truncated
96	 34.29	-1	104564..104668	+	34	55820199	-	stu0097	-	hypothetical protein
97	 28.27	-2	104847..107651	+	934	55820200	labB	stu0098	-	lantibiotic biosynthesis protein
98	 30.23	-2	107689..108912	+	407	55820201	labC	stu0099	-	lantibiotic biosynthesis protein
99	 29.91	-2	108936..109811	+	291	55820202	labT	stu0100	-	bacteriocin exporter, putative
100	 33.14	-1	110429..110941	+	170	55820203	-	stu0101	-	hypothetical protein
39.42	MEAN

3.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.