IslandPath Analysis: Stenotrophomonas maltophilia K279a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.37   STD DEV: 3.55
Stenotrophomonas maltophilia K279a, complete genome - 1..4851126
4386 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.71	0	1..1332	+	443	190572092	dnaA	Smlt0001	-	putative chromosomal replication initiator protein DnaA
2	 63.31	0	1608..2708	+	366	190572093	dnaN	Smlt0002	-	putative DNA polymerase III beta subunit
3	 51.57	-2	2957..3274	-	105	190572094	-	Smlt0003	-	hypothetical protein
4	 67.12	0	3704..4798	+	364	190572095	recF	Smlt0004	-	putative DNA replication and repair protein RecF
5	 64.15	0	4911..7370	+	819	190572096	gyrB	Smlt0005	-	putative DNA gyrase subunit B
6	 69.39	0	7438..8283	+	281	190572097	-	Smlt0006	-	putative transmembrane protease
7	 67.53	0	8355..9161	+	268	190572098	-	Smlt0007	-	putative peptidase
8	 62.79	-1	9294..10481	+	395	190572099	-	Smlt0008	-	conserved hypothetical TPR repeat family protein
9	 67.56	0	10625..11293	+	222	190572100	-	Smlt0009	-	putative proline-rich TonB dependent receptor protein
10	 64.70	0	11388..12149	+	253	190572101	exbB1	Smlt0010	-	putative biopolymer transport exbB protein
11	 60.09	-1	12212..12637	+	141	190572102	exbD1	Smlt0011	-	putative biopolymer transport ExbD1 protein
12	 61.35	-1	12641..13054	+	137	190572103	exbD2	Smlt0012	-	putative biopolymer transport ExbD2 protein
13	 67.28	0	13157..14617	+	486	190572104	cls	Smlt0013	-	putative cardiolipin synthetase
14	 67.78	0	14658..14927	+	89	190572105	-	Smlt0014	-	hypothetical protein
15	 69.22	0	14937..15680	+	247	190572106	-	Smlt0015	-	putative pyridoxal phosphate biosynthetic protein
16	 56.89	-2	16178..16402	-	74	190572107	-	Smlt0017	-	putative DNA-binding protein
17	 55.95	-2	16483..16818	+	111	190572108	-	Smlt0018	-	hypothetical protein
18	 56.51	-2	16909..18060	+	383	190572109	-	Smlt0019	-	putative radical SAM domain protein
19	 54.66	-2	18258..19148	+	296	190572110	-	Smlt0020	-	hypothetical protein
20	 56.33	-2	19267..19740	+	157	190572111	-	Smlt0021	-	hypothetical protein
21	 55.84	-2	20360..21661	+	433	190572112	-	Smlt0023	-	putative integrase/recombinase
22	 56.60	-2	22025..23593	+	522	190572113	-	Smlt0024	-	hypothetical protein
23	 56.97	-2	23632..25704	+	690	190572114	-	Smlt0025	-	hypothetical protein
24	 64.58	0	25896..26756	-	286	190572115	-	Smlt0026	-	putative ISXac3 like transposase
25	 67.01	0	26765..27052	-	95	190572116	-	Smlt0027	-	putative ISXac3 related insertion element
26	 58.93	-2	27395..28816	-	473	190572117	-	Smlt0028	-	hypothetical protein
27	 57.64	-2	28806..30533	-	575	190572118	-	Smlt0029	-	hypothetical protein
28	 62.40	-1	31220..32554	-	444	190572119	-	Smlt0032	-	putative MFS family transporter protein
29	 57.50	-2	32720..32959	-	79	190572120	-	Smlt0033	-	hypothetical protein
30	 63.07	0	32999..33637	-	212	190572121	-	Smlt0034	-	putative transmembrane anchor protein
31	 58.47	-2	33657..34388	-	243	190572122	-	Smlt0035	-	putative transmembrane protein
32	 59.50	-1	34385..37522	-	1045	190572123	smmL	Smlt0036	-	putative AcrA/AcrD/AcrF family protein
33	 60.19	-1	37532..38767	-	411	190572124	smmK	Smlt0037	-	putative cation efflux component protein
34	 64.83	0	38764..40014	-	416	190572125	smmJ	Smlt0038	-	putative cation efflux transporter component
35	 60.70	-1	40105..40473	-	122	190572126	-	Smlt0039	-	putative transmembrane protein
36	 59.01	-2	40895..41482	+	195	190572127	-	Smlt0040	-	hypothetical protein
37	 61.47	-1	42650..45037	+	795	190572128	-	Smlt0042	-	putative RHS-repeat protein
38	 61.09	-1	45221..45865	+	214	190572129	-	Smlt0043	-	putative wall-associated protein
39	 56.65	-2	45995..48031	+	678	190572130	-	Smlt0044	-	putative RHS-repeat protein
40	 55.39	-2	48028..48621	+	197	190572131	-	Smlt0045	-	hypothetical protein
41	 62.45	-1	48633..49343	-	236	190572132	-	Smlt0046	-	hypothetical protein
42	 66.27	0	49452..50468	-	338	190572133	-	Smlt0047	-	putative fructose-1,6-bisphosphatase (d-fructose-1,6-bisphosphate 1-phosphohydrolase)
43	 67.25	0	50702..51904	-	400	190572134	aspC	Smlt0048	-	putative aspartate aminotransferase
44	 70.15	+1	52076..54169	+	697	190572135	-	Smlt0049	-	putative iron transporter protein
45	 68.82	0	54249..54665	-	138	190572136	-	Smlt0050	-	hypothetical protein
46	 68.92	0	54734..55132	+	132	190572137	-	Smlt0051	-	hypothetical protein
47	 62.11	-1	55297..56217	+	306	190572138	-	Smlt0052	-	putative Ku domain protein
48	 66.26	0	56221..58707	+	828	190572139	-	Smlt0053	-	putative ATP-dependent DNA ligase
49	 66.37	0	58779..59117	-	112	190572140	-	Smlt0054	-	putative transmembrane protein
50	 59.53	-1	60466..61656	+	396	190572141	-	Smlt0056	-	putative integrase
51	 67.03	0	62251..62523	+	90	190572142	-	Smlt0057	-	putative phage DNA-binding protein
52	 61.27	-1	62520..62723	+	67	190572143	-	Smlt0058	-	hypothetical protein
53	 62.15	-1	62733..63020	+	95	190572144	-	Smlt0059	-	putative bacteriophage transcriptional regulator protein
54	 67.30	0	63050..63526	+	158	190572145	-	Smlt0060	-	hypothetical protein
55	 62.50	-1	63523..63738	+	71	190572146	-	Smlt0061	-	hypothetical protein
56	 67.28	0	63735..64385	+	216	190572147	-	Smlt0062	-	hypothetical protein
57	 70.77	+1	64372..65223	+	283	190572148	-	Smlt0063	-	putative primase domain protein
58	 67.80	0	65282..67132	+	616	190572149	-	Smlt0064	-	hypothetical protein
59	 64.13	0	67166..67954	+	262	190572150	-	Smlt0065	-	hypothetical protein
60	 61.78	-1	67990..68991	+	333	190572151	Q	Smlt0066	-	putative phage portal vertex protein
61	 62.64	-1	69087..69434	-	115	190572152	-	Smlt0067	-	hypothetical protein
62	 59.36	-1	69431..69772	-	113	190572153	-	Smlt0068	-	hypothetical protein
63	 60.29	-1	69882..70085	-	67	190572154	-	Smlt0069	-	hypothetical protein
64	 71.05	+1	71111..71749	-	212	190572155	-	Smlt0073	-	putative khg/kdpg aldolase
65	 65.60	0	71863..72519	-	218	190572156	-	Smlt0074	-	putative cysteine dioxygenase type I
66	 67.14	0	72692..73747	+	351	190572157	-	Smlt0075	-	putative LacI family transcriptional regulator
67	 53.93	-2	73912..74382	-	156	190572158	-	Smlt0076	-	hypothetical protein
68	 65.66	0	74625..75518	-	297	190572159	phhA	Smlt0077	-	putative phenylalanine-4-hydroxylase
69	 65.84	0	75644..76129	+	161	190572160	-	Smlt0078	-	putative AsnC family transcriptional regulator
70	 63.22	0	76325..77020	+	231	190572161	-	Smlt0079	-	hypothetical protein
71	 68.88	0	77067..78059	-	330	190572162	-	Smlt0080	-	putative patatin-like phospholipase
72	 69.91	0	78510..79526	-	338	190572163	-	Smlt0082	-	hypothetical protein
73	 66.05	0	79684..81954	+	756	190572164	-	Smlt0083	-	putative TonB dependent receptor protein
74	 69.17	0	82066..82905	-	279	190572165	-	Smlt0084	-	putative phosphatase
75	 65.76	0	83169..84047	+	292	190572166	-	Smlt0085	-	hypothetical protein
76	 71.40	+1	84059..85261	+	400	190572167	-	Smlt0086	-	hypothetical protein
77	 69.95	+1	85445..86266	-	273	190572168	-	Smlt0087	-	putative ATP-binding component of ABC transporter protein
78	 68.68	0	86328..87620	+	430	190572169	-	Smlt0088	-	putative fatty acid desaturase
79	 68.17	0	87617..87949	+	110	190572170	-	Smlt0089	-	hypothetical protein
80	 70.36	+1	87969..88781	+	270	190572171	fpg	Smlt0090b	-	putative formamidopyrimidine-dna glycosylase (fapy-dna glycosylase) (dna-(apurinic or apyrimidinic site) lyase mutm)
81	 67.60	0	88888..90492	+	534	190572172	mdoD	Smlt0091	-	putative glucan biosynthesis protein d precursor
82	 66.34	0	91047..91667	-	206	190572173	tdk	Smlt0092	-	putative thymidine kinase
83	 68.17	0	91677..92408	-	243	190572174	-	Smlt0093	-	hypothetical protein
84	 70.24	+1	92447..93229	-	260	190572175	-	Smlt0094	-	hypothetical protein
85	 65.71	0	93275..95251	+	658	190572176	rep	Smlt0095	-	putative ATP-dependent DNA helicase Rep
86	 65.71	0	95512..96036	+	174	190572177	-	Smlt0096	-	hypothetical protein
87	 71.41	+1	96114..96767	-	217	190572178	-	Smlt0097	-	hypothetical protein
88	 68.29	0	96869..97792	+	307	190572179	hel	Smlt0098	-	putative lipoprotein E precursor (outer membrane protein p4)
89	 70.80	+1	97789..98514	+	241	190572180	pyrF	Smlt0099	-	putative orotidine 5'-phosphate decarboxylase
90	 70.96	+1	98939..99892	+	317	190572181	-	Smlt0101	-	hypothetical protein
91	 67.31	0	99901..102528	+	875	190572182	plsB	Smlt0102	-	putative glycerol-3-phosphate acyltransferase
92	 67.74	0	102902..103831	+	309	190572183	-	Smlt0103	-	hypothetical protein
93	 64.90	0	103868..104773	+	301	190572184	rdgC	Smlt0104	-	putative recombination-associated protein
94	 70.00	+1	104833..105612	+	259	190572185	-	Smlt0105	-	hypothetical protein
95	 69.09	0	105938..106804	-	288	190572186	-	Smlt0106	-	putative methylglyoxal synthase
96	 69.85	0	106963..109380	+	805	190572187	-	Smlt0107	-	putative sensor histidine kinase transcriptional regulatory protein two-component regulator
97	 69.16	0	109366..110811	-	481	190572188	gltD	Smlt0108	-	putative glutamate synthase [nadph] small chain
98	 68.35	0	110896..115350	-	1484	190572189	gltB	Smlt0109	-	putative glutamate synthase [nadph] large chain precursor
99	 70.27	+1	116026..117081	+	351	190572190	-	Smlt0110	-	putative viral-like DNA topoisomerase
100	 67.97	0	117059..117442	-	127	190572191	-	Smlt0111	-	hypothetical protein
66.37	MEAN

3.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.