IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.24	0	201..1199	+	332	16752297	-	CP0001	-	delta-aminolevulinic acid dehydratase
2	 38.89	0	1220..2623	-	467	16752298	-	CP0002	-	Na(+)-translocating NADH-quinone reductase subunit A
3	 33.57	-2	2694..3122	-	142	16752299	-	CP0003	-	hypothetical protein
4	 39.51	0	3235..5403	+	722	16752300	-	CP0004	-	fused transcript cleavage factor/uncharacterized domain-containing protein
5	 38.22	0	5537..6724	+	395	16752301	-	CP0005	-	aromatic amino acid aminotransferase
6	 39.74	0	6714..7727	+	337	16752302	-	CP0006	-	hypothetical protein
7	 37.81	0	7687..10839	-	1050	16752303	-	CP0007	-	exodeoxyribonuclease V, beta chain, putative
8	 38.15	0	10826..13900	-	1024	16752304	-	CP0008	-	exodeoxyribonuclease V, gamma subunit, putative
9	 39.94	0	13887..15596	+	569	16752305	-	CP0009	-	hypothetical protein
10	 35.72	-1	15917..16585	+	222	16752306	-	CP0011	-	uridine kinase
11	 39.08	0	16667..17641	-	324	16752307	-	CP0012	-	hypothetical protein
12	 40.48	0	17858..18487	+	209	16752308	rpsD	CP0013	-	30S ribosomal protein S4
13	 40.59	0	18606..19487	-	293	16752309	-	CP0014	-	endonuclease IV
14	 36.16	-1	19822..19998	-	58	16752310	-	CP0015	-	hypothetical protein
15	 41.00	0	19982..21625	+	547	16752311	-	CP0016	-	hypothetical protein
16	 39.24	0	21728..22996	+	422	16753066	-	CP0017	-	hypothetical protein
17	 44.84	+1	23108..25063	+	651	16752312	-	CP0018	-	hypothetical protein
18	 39.44	0	25390..28008	-	872	16752313	-	CP0019	-	hypothetical protein
19	 41.37	0	28270..30708	+	812	16752314	-	CP0020	-	hypothetical protein
20	 42.11	0	30774..31001	+	75	16752315	-	CP0021	-	hypothetical protein
21	 41.58	0	31058..31882	+	274	16752316	-	CP0022	-	hypothetical protein
22	 40.94	0	31879..32601	-	240	16752317	-	CP0023	-	ABC transporter, ATP-binding protein
23	 38.45	0	32608..33096	-	162	16752318	-	CP0024	-	hypothetical protein
24	 44.73	+1	33093..33908	-	271	16752319	-	CP0025	-	2-dehydro-3-deoxyphosphooctonate aldolase
25	 39.24	0	34346..34582	-	78	16752320	-	CP0026	-	hypothetical protein
26	 41.41	0	34692..35669	-	325	16752321	-	CP0027	-	ribosomal large subunit pseudouridine synthase D
27	 41.12	0	35956..36276	-	106	16752322	-	CP0028	-	hypothetical protein
28	 41.67	0	36276..36575	-	99	16752323	-	CP0029	-	hypothetical protein
29	 40.99	0	36680..38116	-	478	16752324	-	CP0030	-	DNA topoisomerase IV subunit A
30	 38.09	0	38120..39928	-	602	16752325	-	CP0031	-	DNA topoisomerase IV subunit B
31	 39.41	0	40478..41497	+	339	16752326	hemA	CP0032	-	glutamyl-tRNA reductase
32	 39.69	0	41864..42256	+	130	16752327	-	CP0033	-	hypothetical protein
33	 39.99	0	42270..44807	+	845	16752328	-	CP0034	-	hypothetical protein
34	 38.15	0	44854..45102	+	82	16752329	-	CP0035	-	hypothetical protein
35	 39.61	0	45124..45378	+	84	16752330	-	CP0036	-	hypothetical protein
36	 38.89	0	45397..45846	+	149	16752331	-	CP0037	-	hypothetical protein
37	 42.22	0	45880..46554	+	224	16752332	-	CP0038	-	hypothetical protein
38	 45.82	+1	46556..47884	+	442	16752333	-	CP0039	-	type III secretion system ATPase
39	 39.25	0	47902..48408	+	168	16752334	-	CP0040	-	hypothetical protein
40	 37.60	0	48412..49254	+	280	16752335	-	CP0041	-	hypothetical protein
41	 42.11	0	49264..50379	+	371	16752336	-	CP0042	-	type III secretion system protein
42	 40.23	0	50395..51903	+	502	16752337	-	CP0043	-	serine/threonine-protein kinase
43	 41.41	0	51900..54659	+	919	16752338	-	CP0044	-	type III secretion protein SctC
44	 37.70	0	54910..55986	-	358	16752339	-	CP0045	-	ATP:guanido phosphotransferase
45	 40.50	0	55973..56488	-	171	16752340	-	CP0046	-	hypothetical protein
46	 38.86	0	56861..57403	-	180	16752341	frr	CP0047	-	ribosome recycling factor
47	 39.89	0	57381..58127	-	248	16752342	pyrH	CP0048	-	uridylate kinase
48	 39.81	0	58135..58983	-	282	16752343	tsf	CP0049	-	elongation factor Ts
49	 38.13	0	58983..59816	-	277	16752344	rpsB	CP0050	-	30S ribosomal protein S2
50	 42.82	0	60200..61369	-	389	16752345	-	CP0051	-	major outer membrane protein, porin
51	 40.60	0	61985..65257	+	1090	16752346	-	CP0052	-	penicillin-binding protein, putative
52	 40.59	0	65328..66347	+	339	16752347	-	CP0053	-	type III secretion chaperone, putative
53	 41.92	0	66672..68126	+	484	16752348	-	CP0054	-	cysteine desulfurase activator complex subunit SufB
54	 40.86	0	68132..68902	+	256	16752349	-	CP0055	-	ABC transporter, ATP-binding protein
55	 41.27	0	68904..70151	+	415	16752350	-	CP0056	-	hypothetical protein
56	 42.51	0	70180..71400	+	406	16752351	-	CP0057	-	aminotransferase, class V
57	 40.58	0	71444..72202	-	252	16752352	-	CP0058	-	hypothetical protein
58	 40.37	0	72367..73020	-	217	16752353	-	CP0059	-	hypothetical protein
59	 40.74	0	73223..73411	+	62	16752354	-	CP0060	-	hypothetical protein
60	 31.58	-2	73364..73477	-	37	16752355	-	CP0061	-	hypothetical protein
61	 43.09	0	73546..74406	+	286	16752356	-	CP0062	-	ParB family chromosome partioning protein
62	 39.71	0	74387..74590	-	67	16752357	-	CP0063	-	hypothetical protein
63	 41.23	0	74662..75636	-	324	16752358	-	CP0064	-	peptide ABC transporter, ATP-binding protein
64	 43.90	0	75626..76600	-	324	16752359	-	CP0065	-	peptide ABC transporter, ATP-binding protein
65	 36.89	-1	76655..77329	+	224	16752360	-	CP0066	-	hypothetical protein
66	 42.86	0	77336..78616	+	426	16752361	-	CP0067	-	phosphate permease family protein
67	 44.33	+1	78654..79862	+	402	16752362	pgk	CP0068	-	phosphoglycerate kinase
68	 52.65	+2	80264..80905	+	213	16752363	-	CP0069	-	hypothetical protein
69	 45.69	+1	81183..82331	+	382	16752364	-	CP0070	-	hypothetical protein
70	 43.25	0	82367..83536	+	389	16752365	-	CP0071	-	hypothetical protein
71	 40.87	0	83665..84819	+	384	16752366	-	CP0072	-	hypothetical protein
72	 41.10	0	84916..86010	+	364	16752367	-	CP0073	-	Nol1/Nop2/Sun family protein
73	 37.78	0	86118..86297	-	59	16752368	-	CP0074	-	hypothetical protein
74	 44.09	+1	86533..87843	-	436	16752369	-	CP0075	-	D-alanyl-D-alanine carboxypeptidase
75	 40.09	0	87954..88382	+	142	16752370	-	CP0076	-	hypothetical protein
76	 40.62	0	88385..88837	-	150	16752371	-	CP0077	-	rsbW protein, putative
77	 38.83	0	88806..89405	-	199	16752372	-	CP0078	-	hypothetical protein
78	 39.92	0	89419..90375	-	318	16753067	-	CP0079	-	hypothetical protein
79	 43.39	0	90527..91411	+	294	16752373	-	CP0080	-	hypothetical protein
80	 40.26	0	91475..95197	-	1240	16752374	dnaE	CP0081	-	DNA polymerase III subunit alpha
81	 42.18	0	95217..96584	-	455	16752375	-	CP0082	-	GlpT/PgpT/UhpT family protein
82	 39.22	0	96828..97031	+	67	16752376	-	CP0083	-	hypothetical protein
83	 41.14	0	97395..98687	+	430	16752377	hisS	CP0084	-	histidyl-tRNA synthetase
84	 40.85	0	98662..100416	+	584	16752378	aspS	CP0085	-	aspartyl-tRNA synthetase
85	 38.61	0	100485..101261	+	258	16752379	-	CP0086	-	peptidyl-prolyl cis-trans isomerase Mip
86	 40.13	0	101258..101728	+	156	16752380	-	CP0087	-	spoU rRNA methylase family protein
87	 41.42	0	101744..102052	-	102	16752381	-	CP0088	-	thioredoxin
88	 39.75	0	102417..103133	+	238	16752382	-	CP0089	-	hypothetical protein
89	 39.91	0	103112..103537	+	141	16752383	-	CP0090	-	hypothetical protein
90	 41.44	0	103534..103644	-	36	16752384	-	CP0091	-	hypothetical protein
91	 37.20	0	103738..104487	+	249	16752385	-	CP0092	-	DNA polymerase III subunit epsilon
92	 41.45	0	104618..105085	+	155	16752386	-	CP0093	-	cytosolic acyl-CoA thioester hydrolase family protein
93	 42.44	0	105095..106720	+	541	16752387	lnt	CP0094	-	apolipoprotein N-acyltransferase
94	 39.35	0	106735..107598	+	287	16752388	lpxC	CP0095	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
95	 40.26	0	107610..108071	+	153	16752389	fabZ	CP0096	-	(3R)-hydroxymyristoyl-ACP dehydratase
96	 42.14	0	108084..108923	+	279	16752390	-	CP0097	-	UDP-N-acetylglucosamine acyltransferase
97	 44.82	+1	108913..109878	+	321	16752391	fmt	CP0098	-	methionyl-tRNA formyltransferase
98	 44.31	+1	109982..110983	+	333	16752392	-	CP0099	-	hypothetical protein
99	 41.36	0	111272..111931	+	219	16752393	rplC	CP0100	-	50S ribosomal protein L3
100	 36.89	-1	111964..112638	+	224	16752394	rplD	CP0101	-	50S ribosomal protein L4
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.