IslandPath Analysis: Burkholderia mallei NCTC 10229



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.88   STD DEV: 4.75
Burkholderia mallei NCTC 10229 chromosome I, complete sequence - 1..3458208
3333 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 74.74	+1	81..959	+	292	124384050	-	BMA10229_A0001	-	hypothetical protein
2	 59.47	-1	1194..1568	+	124	124386277	rpsF	BMA10229_A0002	-	30S ribosomal protein S6
3	 64.00	0	1605..1904	+	99	124385536	priB	BMA10229_A0003	-	primosomal replication protein n
4	 60.14	-1	1907..2182	+	91	124384536	rpsR	BMA10229_A0004	-	30S ribosomal protein S18
5	 63.36	0	2210..2662	+	150	124384613	rplI	BMA10229_A0005	-	50S ribosomal protein L9
6	 65.37	0	2806..4188	+	460	124385320	dnaB	BMA10229_A0006	-	replicative DNA helicase
7	 60.77	-1	4327..4953	+	208	124383509	-	BMA10229_A0007	-	hypothetical protein
8	 65.58	0	4964..5974	+	336	124386492	-	BMA10229_A0008	-	phosphate transporter family protein
9	 74.10	+1	6210..7433	-	407	124385202	-	BMA10229_A0009	-	NLP/P60 family lipoprotein
10	 67.83	0	7673..9307	-	544	124383804	-	BMA10229_A0010	-	PhoH family protein
11	 65.49	0	9350..9604	+	84	124383359	-	BMA10229_A0011	-	hypothetical protein
12	 61.26	-1	9798..10259	-	153	124385854	-	BMA10229_A0012	-	anti-oxidant AhpCTSA family protein
13	 69.45	0	10349..11245	-	298	124386484	-	BMA10229_A0013	-	polysaccharide deacetylase family protein
14	 61.46	-1	11261..12316	-	351	124383888	-	BMA10229_A0014	-	hypothetical protein
15	 71.20	0	12313..13260	-	315	124384607	-	BMA10229_A0015	-	hypothetical protein
16	 66.47	0	13257..14264	-	335	124386023	-	BMA10229_A0016	-	glycosyl transferase, group 2 family protein
17	 67.19	0	14271..15422	-	383	124383514	-	BMA10229_A0017	-	aminotransferase
18	 63.44	0	15549..15920	-	123	124384126	-	BMA10229_A0018	-	hypothetical protein
19	 68.63	0	15917..17647	-	576	124383526	-	BMA10229_A0019	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
20	 64.80	0	17816..18190	-	124	124383807	-	BMA10229_A0020	-	hypothetical protein
21	 65.69	0	18752..19771	+	339	124386649	-	BMA10229_A0021	-	aminotransferase, classes I and II
22	 67.95	0	19816..21144	+	442	124385647	hom	BMA10229_A0022	-	homoserine dehydrogenase
23	 66.94	0	21152..22603	+	483	124384010	thrC	BMA10229_A0023	-	threonine synthase
24	 71.38	0	23379..24671	+	430	124384914	moeA-2	BMA10229_A0024	-	molybdopterin biosynthesis moeA protein
25	 71.32	0	24693..24950	+	85	124385449	moaD	BMA10229_A0025	-	molybdopterin converting factor, subunit 1
26	 67.89	0	24961..25449	+	162	124385226	moaE	BMA10229_A0026	-	molybdopterin converting factor, subunit 2
27	 67.77	0	25771..26313	-	180	124386131	-	BMA10229_A0027	-	hypothetical protein
28	 65.86	0	26497..26994	+	165	124383404	-	BMA10229_A0028	-	Rrf2 family protein
29	 80.70	+2	26991..27104	+	37	124384987	-	BMA10229_A0029	-	hypothetical protein
30	 65.97	0	27198..29795	+	865	124385885	clpB	BMA10229_A0030	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
31	 66.43	0	30034..30456	-	140	124386247	-	BMA10229_A0031	-	hypothetical protein
32	 71.26	0	30535..31230	-	231	124383988	-	BMA10229_A0032	-	hypothetical protein
33	 66.67	0	31499..31993	+	164	124384343	-	BMA10229_A0033	-	MerR family transcriptional regulator
34	 65.66	0	31942..32340	+	132	124385510	-	BMA10229_A0034	-	carboxymuconolactone decarboxylase family protein
35	 69.76	0	32731..34086	-	451	124385828	-	BMA10229_A0035	-	putative multidrug resistance protein NorM
36	 69.30	0	34090..35838	-	582	124383703	-	BMA10229_A0036	-	hypothetical protein
37	 70.37	0	35866..36108	+	80	124385132	-	BMA10229_A0038	-	hypothetical protein
38	 56.44	-2	36062..36325	-	87	124384089	rpmE2	BMA10229_A0037	-	50S ribosomal protein L31 type B
39	 67.14	0	36540..37385	-	281	124384517	-	BMA10229_A0039	-	hypothetical protein
40	 67.76	0	37428..38984	-	518	124383554	-	BMA10229_A0040	-	major facilitator transporter
41	 70.86	0	38981..39481	-	166	124386091	-	BMA10229_A0041	-	MerR family transcriptional regulator
42	 61.92	-1	39618..40880	-	420	124385334	rho	BMA10229_A0042	-	transcription termination factor Rho
43	 55.56	-2	40944..41069	-	41	124384665	-	BMA10229_A0043	-	hypothetical protein
44	 61.77	-1	41076..41402	-	108	124384408	trx	BMA10229_A0044	-	thioredoxin
45	 73.12	+1	42066..44543	+	825	124386554	-	BMA10229_A0045	-	DNA polymerase III subunits gamma and tau
46	 64.83	0	44640..44966	+	108	124385489	-	BMA10229_A0046	-	hypothetical protein
47	 68.99	0	44998..45600	+	200	124385650	recR	BMA10229_A0047	-	recombination protein RecR
48	 69.57	0	45670..46875	+	401	124384295	-	BMA10229_A0049	-	CAIB/BAIF family protein
49	 78.29	+2	46827..46955	-	42	124384956	-	BMA10229_A0048	-	hypothetical protein
50	 66.93	0	46980..47741	+	253	124384804	surE	BMA10229_A0050	-	stationary phase survival protein SurE
51	 73.37	+1	47738..48706	+	322	124386039	pcm	BMA10229_A0051	-	protein-L-isoaspartate O-methyltransferase
52	 68.01	0	48718..49608	+	296	124385128	-	BMA10229_A0052	-	putative lipoprotein NlpD
53	 64.63	0	49620..50699	+	359	124385284	rpoS	BMA10229_A0053	-	RNA polymerase sigma factor RpoS
54	 64.74	0	50707..51483	+	258	124384361	-	BMA10229_A0054	-	hypothetical protein
55	 69.19	0	51493..51690	+	65	124386331	-	BMA10229_A0056	-	hypothetical protein
56	 71.89	0	51657..52517	-	286	124383859	-	BMA10229_A0055	-	endonuclease/exonuclease/phosphatase family protein
57	 67.10	0	52595..53992	+	465	124385031	rumA	BMA10229_A0057	-	23S rRNA 5-methyluridine methyltransferase
58	 63.95	0	54066..54764	-	232	124385615	-	BMA10229_A0058	-	hypothetical protein
59	 62.91	-1	55013..55438	+	141	124384473	ndk	BMA10229_A0059	-	nucleoside diphosphate kinase
60	 65.44	0	55480..56616	+	378	124383540	-	BMA10229_A0060	-	radical SAM protein
61	 73.63	+1	56683..57846	+	387	124386325	-	BMA10229_A0061	-	hypothetical protein
62	 69.46	0	57990..59240	+	416	124385778	ispG	BMA10229_A0062	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
63	 65.40	0	59259..60599	+	446	124385953	hisS	BMA10229_A0063	-	histidyl-tRNA synthetase
64	 67.46	0	60652..61281	+	209	124385333	-	BMA10229_A0064	-	hypothetical protein
65	 69.11	0	61326..62471	+	381	124384205	-	BMA10229_A0065	-	putative lipoprotein
66	 66.07	0	62746..64083	+	445	124383522	engA	BMA10229_A0066	-	GTP-binding protein EngA
67	 54.17	-2	64218..64457	+	79	124383448	hfq	BMA10229_A0067	-	RNA-binding protein Hfq
68	 66.07	0	64529..65692	+	387	124386447	hflX	BMA10229_A0068	-	GTP-binding protein HflX
69	 69.93	0	65738..67087	+	449	124384316	hflK	BMA10229_A0069	-	ftsH protease activity modulator HflK
70	 69.67	0	67104..68003	+	299	124383417	hflC	BMA10229_A0070	-	ftsH protease activity modulator HflC
71	 61.98	-1	68028..68219	+	63	124385774	-	BMA10229_A0071	-	hypothetical protein
72	 70.76	0	68331..69479	+	382	124384850	hisZ	BMA10229_A0072	-	ATP phosphoribosyltransferase regulatory subunit
73	 67.04	0	69604..70950	+	448	124384688	purA	BMA10229_A0073	-	adenylosuccinate synthetase
74	 63.33	0	70951..71550	+	199	124383667	-	BMA10229_A0074	-	phosphoribosyl transferase domain-containing protein
75	 58.76	-1	71682..71858	-	58	124386055	-	BMA10229_A0075	-	hypothetical protein
76	 63.92	0	71841..73733	+	630	124385081	kup	BMA10229_A0076	-	potassium uptake protein
77	 68.73	0	73968..76292	-	774	124384978	-	BMA10229_A0077	-	putative tex protein
78	 65.04	0	76299..76421	+	40	124384250	-	BMA10229_A0078	-	hypothetical protein
79	 68.13	0	76432..77181	+	249	124385155	-	BMA10229_A0079	-	putative lipoprotein
80	 57.87	-2	77290..77505	+	71	124385856	-	BMA10229_A0080	-	hypothetical protein
81	 69.59	0	77568..79826	+	752	124384589	-	BMA10229_A0081	-	putative ATP-dependent helicase
82	 64.73	0	80002..80826	-	274	124384405	comL	BMA10229_A0082	-	competence lipoprotein ComL
83	 71.11	0	80898..82067	+	389	124385530	-	BMA10229_A0083	-	RluA family pseudouridine synthase
84	 74.79	+1	82074..82910	+	278	124386252	-	BMA10229_A0084	-	hypothetical protein
85	 67.66	0	83427..85241	+	604	124383320	phaC	BMA10229_A0085	-	poly(R)-hydroxyalkanoic acid synthase, class I
86	 69.29	0	85338..86519	+	393	124384894	phbA	BMA10229_A0086	-	acetyl-CoA acetyltransferase
87	 63.70	0	86645..87385	+	246	124385773	phbB-1	BMA10229_A0087	-	acetyacetyl-CoA reductase
88	 54.97	-2	87522..88094	+	190	124386439	phaR	BMA10229_A0088	-	polyhydroxyalkanoate synthesis repressor PhaR
89	 65.95	0	88665..90056	+	463	124384882	-	BMA10229_A0089	-	putative tRNA modifying protein
90	 72.49	0	90059..90985	+	308	124385617	-	BMA10229_A0090	-	carbohydrate kinase
91	 69.87	0	91081..92265	+	394	124385106	-	BMA10229_A0091	-	beta-ketothiolase
92	 74.91	+1	92282..92863	+	193	124384061	-	BMA10229_A0092	-	hypothetical protein
93	 66.84	0	93164..94348	+	394	124383625	metC	BMA10229_A0093	-	cystathionine beta-lyase
94	 67.73	0	94612..95457	-	281	124384487	serB	BMA10229_A0094	-	phosphoserine phosphatase
95	 68.29	0	95500..96237	+	245	124385381	-	BMA10229_A0095	-	hypothetical protein
96	 66.85	0	96308..96853	+	181	124386327	-	BMA10229_A0096	-	hypothetical protein
97	 69.60	0	97521..98339	-	272	124385968	-	BMA10229_A0097	-	hypothetical protein
98	 74.28	+1	98336..99031	-	231	124384909	-	BMA10229_A0098	-	ABC transporter, ATP-binding protein
99	 70.16	0	99165..101657	+	830	124385936	-	BMA10229_A0099	-	AsmA family protein
100	 63.11	-1	101908..103707	+	599	124384967	-	BMA10229_A0100	-	ABC transporter, ATP-binding protein
67.88	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.