IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.27	0	567..1994	+	475	75674200	dnaA	Nwi_0001	-	chromosomal replication initiation protein
2	 63.18	0	2211..3329	+	372	75674201	-	Nwi_0002	-	DNA polymerase III subunit beta
3	 70.03	+2	3391..4548	+	385	75674202	recF	Nwi_0003	-	recombination protein F
4	 64.62	0	4812..7253	+	813	75674203	gyrB	Nwi_0004	-	DNA gyrase subunit B
5	 64.25	0	7303..7923	-	206	75674204	-	Nwi_0005	-	hypothetical protein
6	 64.77	0	8214..8582	-	122	75674205	-	Nwi_0006	-	transposase, IS4
7	 61.90	0	8597..8995	-	132	75674206	-	Nwi_0007	-	transposase
8	 64.04	0	9288..9782	+	164	75674207	-	Nwi_0008	-	hypothetical protein
9	 62.13	0	10086..10658	+	190	75674208	-	Nwi_0009	-	nitrogen-fixing NifU
10	 65.59	0	10655..11857	-	400	75674209	-	Nwi_0010	-	hypothetical protein
11	 70.82	+2	12141..12839	+	232	75674210	-	Nwi_0011	-	peptidase M22, glycoprotease
12	 63.77	0	12836..13318	+	160	75674211	-	Nwi_0012	-	ribosomal-protein-alanine acetyltransferase
13	 61.57	0	13439..13909	+	156	75674212	-	Nwi_0013	-	ferric-uptake regulator
14	 65.83	0	13929..15362	+	477	75674213	-	Nwi_0014	-	tRNA-i(6)A37 modification enzyme MiaB
15	 66.38	+1	15367..16416	+	349	75674214	-	Nwi_0015	-	PhoH-like protein
16	 63.35	0	16416..16988	+	190	75674215	-	Nwi_0016	-	hypothetical protein
17	 67.29	+1	16989..18116	+	375	75674216	-	Nwi_0017	-	ctransporter-associated region
18	 64.49	0	18113..19720	+	535	75674217	lnt	Nwi_0018	-	apolipoprotein N-acyltransferase
19	 62.86	0	19954..20373	+	139	75674218	-	Nwi_0019	-	XRE family transcriptional regulator
20	 66.41	+1	20396..21169	+	257	75674219	trmB	Nwi_0020	-	tRNA (guanine-N(7))-methyltransferase
21	 64.50	0	21460..22242	+	260	75674220	-	Nwi_0021	-	hypothetical protein
22	 64.13	0	22246..23862	+	538	75674221	nusA	Nwi_0022	-	transcription elongation factor NusA
23	 67.42	+1	24107..24772	+	221	75674222	-	Nwi_0023	-	hypothetical protein
24	 67.62	+1	24841..27456	+	871	75674223	infB	Nwi_0024	-	translation initiation factor IF-2
25	 60.09	0	27584..28024	+	146	75674224	rbfA	Nwi_0025	-	ribosome-binding factor A
26	 66.30	+1	28031..29107	+	358	75674225	truB	Nwi_0026	-	tRNA pseudouridine synthase B
27	 59.63	0	29114..29383	+	89	75674226	rpsO	Nwi_0027	-	30S ribosomal protein S15
28	 65.69	0	29730..31886	+	718	75674227	-	Nwi_0028	-	polynucleotide phosphorylase/polyadenylase
29	 68.31	+1	32072..32986	-	304	75674228	-	Nwi_0029	-	regulatory protein, LysR
30	 65.30	0	33243..35432	+	729	75674229	-	Nwi_0030	-	haem catalase/peroxidase
31	 65.33	0	35623..36219	+	198	75674230	-	Nwi_0031	-	glutathione S-transferase
32	 64.63	0	36277..37110	-	277	75674231	-	Nwi_0032	-	enoyl-(acyl carrier protein) reductase
33	 63.89	0	37283..38506	-	407	75674232	-	Nwi_0033	-	3-oxoacyl-(acyl carrier protein) synthase I
34	 60.95	0	38590..39114	-	174	75674233	-	Nwi_0034	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
35	 60.75	0	39551..40057	+	168	75674234	-	Nwi_0035	-	ferric-uptake regulator
36	 63.28	0	40312..40842	-	176	75674235	-	Nwi_0036	-	hypothetical protein
37	 65.57	0	41197..42198	+	333	75674236	-	Nwi_0037	-	2-hydroxyacid dehydrogenase
38	 65.35	0	42286..43122	-	278	75674237	-	Nwi_0038	-	UBA/THIF-type NAD/FAD binding fold
39	 67.26	+1	43206..44549	+	447	75674238	-	Nwi_0039	-	hypothetical protein
40	 65.53	0	44680..45561	-	293	75674239	-	Nwi_0040	-	formamidopyrimidine-DNA glycolase
41	 64.16	0	45682..46479	+	265	75674240	ubiE	Nwi_0041	-	ubiquinone/menaquinone biosynthesis methyltransferase
42	 66.98	+1	46476..48056	+	526	75674241	-	Nwi_0042	-	2-polyprenylphenol 6-hydroxylase
43	 66.18	+1	48119..49558	+	479	75674242	-	Nwi_0043	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
44	 70.15	+2	49555..50013	+	152	75674243	-	Nwi_0044	-	dUTP pyrophosphatase subfamily protein
45	 66.98	+1	50291..52807	+	838	75674244	-	Nwi_0045	-	histidine kinase
46	 67.26	+1	52804..54327	+	507	75674245	-	Nwi_0046	-	hypothetical protein
47	 61.06	0	54432..54752	+	106	75674246	-	Nwi_0047	-	hypothetical protein
48	 68.04	+1	55254..55979	+	241	75674247	-	Nwi_0048	-	nucleotidyl transferase
49	 69.20	+1	56100..59261	+	1053	75674248	-	Nwi_0049	-	hypothetical protein
50	 67.44	+1	59255..62863	+	1202	75674249	-	Nwi_0050	-	UvrD/REP helicase
51	 60.75	0	62959..63279	+	106	75674250	-	Nwi_0051	-	thioredoxin
52	 67.80	+1	63475..64803	-	442	75674251	-	Nwi_0052	-	folylpolyglutamate synthetase
53	 64.90	0	64800..65759	-	319	75674252	-	Nwi_0053	-	acetyl-CoA carboxylase subunit beta
54	 67.50	+1	66066..66902	-	278	75674253	trpA	Nwi_0054	-	tryptophan synthase subunit alpha
55	 64.90	0	66899..68143	-	414	75674254	-	Nwi_0055	-	tryptophan synthase subunit beta
56	 66.52	+1	68285..68962	-	225	75674255	-	Nwi_0056	-	N-(5'-phosphoribosyl)anthranilate isomerase
57	 63.22	0	69176..69523	-	115	75674256	-	Nwi_0057	-	hypothetical protein
58	 57.52	-1	69770..70075	-	101	75674257	ihfB	Nwi_0058	-	integration host factor subunit beta
59	 64.02	0	70241..71224	-	327	75674258	-	Nwi_0059	-	peptidase S49, SppA
60	 65.32	0	71498..72238	-	246	75674259	-	Nwi_0060	-	CysZ-like protein
61	 65.43	0	72425..72910	-	161	75674260	-	Nwi_0061	-	hypothetical protein
62	 63.08	0	73016..74020	-	334	75674261	-	Nwi_0062	-	hypothetical protein
63	 68.68	+1	74260..75702	+	480	75674262	-	Nwi_0063	-	amine oxidase
64	 64.57	0	75699..76367	+	222	75674263	-	Nwi_0064	-	hypothetical protein
65	 65.35	0	76495..78933	-	812	75674264	pheT	Nwi_0065	-	phenylalanyl-tRNA synthetase subunit beta
66	 63.06	0	78930..80039	-	369	75674265	pheS	Nwi_0066	-	phenylalanyl-tRNA synthetase subunit alpha
67	 65.83	0	80156..80515	-	119	75674266	rplT	Nwi_0067	-	50S ribosomal protein L20
68	 58.21	-1	80581..80781	-	66	75674267	rpmI	Nwi_0068	-	50S ribosomal protein L35
69	 59.30	0	81110..81625	-	171	75674268	infC	Nwi_0069	-	translation initiation factor IF-3
70	 68.86	+1	81853..82626	+	257	75674269	-	Nwi_0070	-	hypothetical protein
71	 64.52	0	82679..85012	-	777	75674270	-	Nwi_0071	-	hypothetical protein
72	 59.74	0	85217..86920	-	567	75674271	-	Nwi_0072	-	PAS sensor protein
73	 64.79	0	87836..88846	+	336	75674272	-	Nwi_0073	-	thioredoxin-related
74	 62.96	0	88990..89664	+	224	75674273	-	Nwi_0074	-	peptidase S16
75	 59.70	0	89704..89904	+	66	75674274	-	Nwi_0075	-	hypothetical protein
76	 63.13	0	89965..90303	-	112	75674275	-	Nwi_0076	-	nitrogen regulatory protein P-II
77	 63.95	0	90530..91414	+	294	75674276	-	Nwi_0077	-	hypothetical protein
78	 64.89	0	91510..92412	-	300	75674277	-	Nwi_0078	-	acyl-CoA thioesterase
79	 68.22	+1	92582..93802	+	406	75674278	-	Nwi_0079	-	2-octaprenyl-6-methoxyphenyl hydroxylase
80	 51.75	-2	94175..94603	-	142	75674279	-	Nwi_0080	-	hypothetical protein
81	 54.01	-2	96113..97084	-	323	75674280	-	Nwi_0081	-	ISSpo8, transposase
82	 69.89	+2	97354..98625	+	423	75674281	-	Nwi_0082	-	aminotransferase, class I and II
83	 66.55	+1	98638..101139	+	833	75674282	-	Nwi_0083	-	cell division protein FtsK/SpoIIIE
84	 63.58	0	101475..102251	+	258	75674283	-	Nwi_0084	-	Outer membrane lipoprotein carrier protein LolA
85	 63.40	0	102283..103170	+	295	75674284	-	Nwi_0085	-	exodeoxyribonuclease III xth
86	 66.05	0	103274..103756	-	160	75674285	-	Nwi_0086	-	cyclic nucleotide-binding protein
87	 63.90	0	103980..104666	-	228	75674286	-	Nwi_0087	-	transcriptional regulatory protein
88	 68.95	+1	104886..105455	+	189	75674287	-	Nwi_0088	-	hypothetical protein
89	 64.59	0	105622..106296	-	224	75674288	-	Nwi_0089	-	hypothetical protein
90	 64.68	0	106293..106997	-	234	75674289	-	Nwi_0090	-	glutathione S-transferase
91	 64.89	0	107151..109802	+	883	75674290	leuS	Nwi_0091	-	leucyl-tRNA synthetase
92	 68.55	+1	109789..110373	+	194	75674291	-	Nwi_0092	-	hypothetical protein
93	 68.03	+1	110384..111412	+	342	75674292	holA	Nwi_0093	-	DNA polymerase III subunit delta
94	 65.76	0	111481..112362	-	293	75674293	-	Nwi_0094	-	ParB-like partition protein
95	 63.79	0	112660..113529	-	289	75674294	-	Nwi_0095	-	cobyrinic acid a,c-diamide synthase
96	 61.03	0	113514..114347	-	277	75674295	-	Nwi_0096	-	glucose inhibited division protein
97	 65.54	0	114370..116241	-	623	75674296	-	Nwi_0097	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
98	 63.82	0	116402..117772	-	456	75674297	trmE	Nwi_0098	-	tRNA modification GTPase TrmE
99	 63.37	0	118015..120045	+	676	75674298	-	Nwi_0099	-	hypothetical protein
100	 59.24	0	120114..121379	-	421	75674299	rho	Nwi_0100	-	transcription termination factor Rho
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.