IslandPath Analysis: Jannaschia sp. CCS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.35   STD DEV: 3.42
Jannaschia sp. CCS1, complete genome - 1..4317977
4212 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.54	-1	48..1475	+	475	89052492	dnaA	Jann_0001	-	chromosomal replication initiation protein
2	 60.95	0	1603..2721	+	372	89052493	-	Jann_0002	-	DNA polymerase III subunit beta
3	 64.45	0	2749..3876	+	375	89052494	recF	Jann_0003	-	recombination protein F
4	 60.50	0	3950..6367	+	805	89052495	gyrB	Jann_0004	-	DNA gyrase subunit B
5	 58.37	-1	6479..7129	+	216	89052496	-	Jann_0005	-	hypothetical protein
6	 60.00	0	7558..7992	+	144	89052497	-	Jann_0006	-	hypothetical protein
7	 65.66	0	8097..8495	+	132	89052498	-	Jann_0007	-	hypothetical protein
8	 64.71	0	8575..8931	+	118	89052499	-	Jann_0008	-	hypothetical protein
9	 63.19	0	9144..10322	+	392	89052500	-	Jann_0009	-	major facilitator transporter
10	 62.13	0	10410..11687	+	425	89052501	-	Jann_0010	-	hypothetical protein
11	 63.58	0	11684..12589	-	301	89052502	-	Jann_0011	-	rhodanese-like protein
12	 61.02	0	12626..12997	-	123	89052503	-	Jann_0012	-	hypothetical protein
13	 55.02	-2	12994..13242	-	82	89052504	-	Jann_0013	-	hypothetical protein
14	 62.12	0	13339..13932	+	197	89052505	-	Jann_0014	-	nicotinamidase
15	 58.68	-1	13929..14792	-	287	89052506	-	Jann_0015	-	MscS mechanosensitive ion channel
16	 61.17	0	14918..16027	+	369	89052507	-	Jann_0016	-	glycine amidinotransferase
17	 62.14	0	16039..16635	-	198	89052508	-	Jann_0017	-	lysine exporter protein LysE/YggA
18	 66.22	+1	16714..17826	-	370	89052509	-	Jann_0018	-	putative RNA methylase
19	 59.45	0	17961..18653	-	230	89052510	-	Jann_0019	-	hypothetical protein
20	 60.31	0	19046..20602	-	518	89052511	-	Jann_0020	-	amino acid carrier protein
21	 58.10	-1	20615..21046	-	143	89052512	-	Jann_0021	-	hypothetical protein
22	 61.56	0	21276..22568	+	430	89052513	-	Jann_0022	-	nicotinate phosphoribosyltransferase
23	 48.45	-2	22565..23596	-	343	89052514	-	Jann_0023	-	hypothetical protein
24	 61.40	0	23724..24008	-	94	89052515	-	Jann_0024	-	plasmid stabilization system protein
25	 58.53	-1	24005..24262	-	85	89052516	-	Jann_0025	-	transcriptional regulator
26	 68.10	+1	24321..24740	-	139	89052517	-	Jann_0026	-	hypothetical protein
27	 58.53	-1	25037..25663	-	208	89052518	-	Jann_0027	-	hypothetical protein
28	 62.50	0	25771..26970	-	399	89052519	-	Jann_0028	-	aromatic amino acid aminotransferase
29	 62.21	0	26948..27508	-	186	89052520	-	Jann_0029	-	GCN5-related N-acetyltransferase
30	 61.69	0	27505..28368	-	287	89052521	-	Jann_0030	-	3-mercaptopyruvate sulfurtransferase
31	 58.07	-1	28499..28975	-	158	89052522	smpB	Jann_0031	-	SsrA-binding protein
32	 65.22	0	29017..30189	-	390	89052523	-	Jann_0032	-	major facilitator transporter
33	 61.76	0	30186..31061	-	291	89052524	-	Jann_0033	-	dihydrodipicolinate synthase
34	 63.90	0	31209..33158	+	649	89052525	-	Jann_0034	-	lytic transglycosylase, catalytic
35	 61.78	0	33223..33693	+	156	89052526	-	Jann_0035	-	TspO and MBR like proteins
36	 58.16	-1	33958..34251	+	97	89052527	-	Jann_0036	-	hypothetical protein
37	 63.16	0	34695..35036	+	113	89052528	-	Jann_0037	-	hypothetical protein
38	 63.03	0	35188..37662	-	824	89052529	infB	Jann_0038	-	translation initiation factor IF-2
39	 61.93	0	37659..38291	-	210	89052530	-	Jann_0039	-	hypothetical protein
40	 60.12	0	38314..40086	-	590	89052531	nusA	Jann_0040	-	transcription elongation factor NusA
41	 60.17	0	40091..40675	-	194	89052532	-	Jann_0041	-	hypothetical protein
42	 59.84	0	40821..41201	-	126	89052533	-	Jann_0042	-	hypothetical protein
43	 63.41	0	41286..41561	-	91	89052534	-	Jann_0043	-	hypothetical protein
44	 60.65	0	41642..42754	+	370	89052535	-	Jann_0044	-	alcohol dehydrogenase GroES-like protein
45	 58.67	-1	42761..43360	+	199	89052536	-	Jann_0045	-	hypothetical protein
46	 63.24	0	43417..43854	+	145	89052537	-	Jann_0046	-	hypothetical protein
47	 61.45	0	43858..44355	+	165	89052538	-	Jann_0047	-	GCN5-related N-acetyltransferase
48	 59.03	0	44407..45126	+	239	89052539	-	Jann_0048	-	hypothetical protein
49	 58.99	0	45126..45581	+	151	89052540	-	Jann_0049	-	hypothetical protein
50	 58.29	-1	45578..46210	-	210	89052541	-	Jann_0050	-	TetR family transcriptional regulator
51	 60.72	0	46326..47267	+	313	89052542	-	Jann_0051	-	auxin efflux carrier
52	 62.83	0	47376..48209	+	277	89052543	-	Jann_0052	-	carboxylesterase
53	 61.70	0	48209..48832	+	207	89052544	-	Jann_0053	-	HAD family hydrolase
54	 60.49	0	48864..49769	+	301	89052545	-	Jann_0054	-	ornithine cyclodeaminase
55	 62.26	0	49859..51106	-	415	89052546	-	Jann_0055	-	major facilitator transporter
56	 62.49	0	51266..52342	+	358	89052547	-	Jann_0056	-	AFG1-like ATPase
57	 58.84	-1	52350..53039	-	229	89052548	-	Jann_0057	-	chloramphenicol acetyltransferase
58	 58.97	0	53043..53549	-	168	89052549	-	Jann_0058	-	hypothetical protein
59	 62.48	0	53649..54914	-	421	89052550	-	Jann_0059	-	FolC bifunctional protein
60	 61.55	0	55003..55959	-	318	89052551	-	Jann_0060	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
61	 64.74	0	56031..56912	-	293	89052552	-	Jann_0061	-	abortive infection protein
62	 62.87	0	57092..58855	+	587	89052553	-	Jann_0062	-	dihydroxy-acid dehydratase
63	 67.09	+1	58842..59555	+	237	89052554	-	Jann_0063	-	hypothetical protein
64	 61.37	0	59621..60394	+	257	89052555	-	Jann_0064	-	hypothetical protein
65	 64.78	0	60421..60792	+	123	89052556	-	Jann_0065	-	hypothetical protein
66	 45.00	-2	61089..61268	+	59	89052557	-	Jann_0066	-	hypothetical protein
67	 60.87	0	61301..62524	-	407	89052558	-	Jann_0067	-	argininosuccinate synthase
68	 58.61	-1	62605..63411	+	268	89052559	-	Jann_0068	-	hypothetical protein
69	 60.09	0	63420..64697	+	425	89052560	-	Jann_0069	-	threonine dehydratase
70	 62.96	0	64694..65017	-	107	89052561	-	Jann_0070	-	Hpt domain-containing protein
71	 61.83	0	65165..66445	+	426	89052562	-	Jann_0071	-	response regulator receiver (CheY-like) modulated serine phosphatase
72	 61.94	0	66479..66922	-	147	89052563	-	Jann_0072	-	NUDIX hydrolase
73	 64.80	0	67004..67969	+	321	89052564	-	Jann_0073	-	KpsF/GutQ family protein
74	 59.23	0	68038..68373	-	111	89052565	-	Jann_0074	-	hypothetical protein
75	 60.00	0	68763..69062	-	99	89052566	-	Jann_0075	-	hypothetical protein
76	 61.84	0	69258..70562	-	434	89052567	-	Jann_0076	-	UDP-glucose 6-dehydrogenase
77	 60.16	0	70578..71576	-	332	89052568	-	Jann_0077	-	NAD-dependent epimerase/dehydratase
78	 60.28	0	71852..73150	-	432	89052569	-	Jann_0078	-	glycosyl transferase, group 1
79	 62.87	0	73266..74267	+	333	89052570	-	Jann_0079	-	Hsp33 protein
80	 65.82	+1	74251..74838	+	195	89052571	-	Jann_0080	-	NUDIX hydrolase
81	 65.44	0	74838..75977	+	379	89052572	-	Jann_0081	-	polynucleotide adenylyltransferase protein
82	 62.49	0	76030..77874	+	614	89052573	-	Jann_0082	-	ABC transporter related
83	 64.57	0	77871..79730	+	619	89052574	-	Jann_0083	-	ABC transporter related
84	 59.13	0	79774..80277	+	167	89052575	-	Jann_0084	-	DNA topology modulation kinase FlaR, putative
85	 62.11	0	80321..80737	+	138	89052576	-	Jann_0085	-	hypothetical protein
86	 64.21	0	80706..81965	+	419	89052577	-	Jann_0086	-	(Uracil-5)-methyltransferase
87	 59.33	0	81982..82758	+	258	89052578	-	Jann_0087	-	Ion transport protein
88	 61.93	0	82789..84708	-	639	89052579	-	Jann_0088	-	1-deoxy-D-xylulose-5-phosphate synthase
89	 64.13	0	84769..85635	-	288	89052580	-	Jann_0089	-	farnesyl-diphosphate synthase
90	 60.08	0	85639..85881	-	80	89052581	-	Jann_0090	-	exodeoxyribonuclease VII small subunit
91	 65.48	0	85871..86794	-	307	89052582	-	Jann_0091	-	histone deacetylase superfamily protein
92	 63.06	0	86924..87643	-	239	89052583	-	Jann_0092	-	two component transcriptional regulator
93	 64.51	0	87640..88149	-	169	89052584	-	Jann_0093	-	MarR family transcriptional regulator
94	 61.13	0	88325..89191	+	288	89052585	-	Jann_0094	-	branched-chain amino acid aminotransferase
95	 57.65	-1	90081..90956	-	291	89052586	-	Jann_0095	-	LysR family transcriptional regulator
96	 48.63	-2	90977..91342	-	121	89052587	-	Jann_0096	-	hypothetical protein
97	 58.91	-1	91593..92159	+	188	89052588	-	Jann_0097	-	TetR family transcriptional regulator
98	 59.48	0	92239..92544	+	101	89052589	-	Jann_0098	-	hypothetical protein
99	 61.01	0	92541..92876	+	111	89052590	-	Jann_0099	-	hypothetical protein
100	 58.27	-1	92904..93320	+	138	89052591	-	Jann_0100	-	hypothetical protein
62.35	MEAN

3.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.