IslandPathversion 1.0

IslandPath Analysis: Jannaschia sp. CCS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.35 STD DEV: 3.42
Jannaschia sp. CCS1, complete genome - 1..4317977
4212 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.54	-1	48..1475	+	475	89052492	dnaA	Jann_0001	-	chromosomal replication initiation protein
2	 60.95	0	1603..2721	+	372	89052493	-	Jann_0002	-	DNA polymerase III subunit beta
3	 64.45	0	2749..3876	+	375	89052494	recF	Jann_0003	-	recombination protein F
4	 60.50	0	3950..6367	+	805	89052495	gyrB	Jann_0004	-	DNA gyrase subunit B
5	 58.37	-1	6479..7129	+	216	89052496	-	Jann_0005	-	hypothetical protein
6	 60.00	0	7558..7992	+	144	89052497	-	Jann_0006	-	hypothetical protein
7	 65.66	0	8097..8495	+	132	89052498	-	Jann_0007	-	hypothetical protein
8	 64.71	0	8575..8931	+	118	89052499	-	Jann_0008	-	hypothetical protein
9	 63.19	0	9144..10322	+	392	89052500	-	Jann_0009	-	major facilitator transporter
10	 62.13	0	10410..11687	+	425	89052501	-	Jann_0010	-	hypothetical protein
11	 63.58	0	11684..12589	-	301	89052502	-	Jann_0011	-	rhodanese-like protein
12	 61.02	0	12626..12997	-	123	89052503	-	Jann_0012	-	hypothetical protein
13	 55.02	-2	12994..13242	-	82	89052504	-	Jann_0013	-	hypothetical protein
14	 62.12	0	13339..13932	+	197	89052505	-	Jann_0014	-	nicotinamidase
15	 58.68	-1	13929..14792	-	287	89052506	-	Jann_0015	-	MscS mechanosensitive ion channel
16	 61.17	0	14918..16027	+	369	89052507	-	Jann_0016	-	glycine amidinotransferase
17	 62.14	0	16039..16635	-	198	89052508	-	Jann_0017	-	lysine exporter protein LysE/YggA
18	 66.22	+1	16714..17826	-	370	89052509	-	Jann_0018	-	putative RNA methylase
19	 59.45	0	17961..18653	-	230	89052510	-	Jann_0019	-	hypothetical protein
20	 60.31	0	19046..20602	-	518	89052511	-	Jann_0020	-	amino acid carrier protein
21	 58.10	-1	20615..21046	-	143	89052512	-	Jann_0021	-	hypothetical protein
22	 61.56	0	21276..22568	+	430	89052513	-	Jann_0022	-	nicotinate phosphoribosyltransferase
23	 48.45	-2	22565..23596	-	343	89052514	-	Jann_0023	-	hypothetical protein
24	 61.40	0	23724..24008	-	94	89052515	-	Jann_0024	-	plasmid stabilization system protein
25	 58.53	-1	24005..24262	-	85	89052516	-	Jann_0025	-	transcriptional regulator
26	 68.10	+1	24321..24740	-	139	89052517	-	Jann_0026	-	hypothetical protein
27	 58.53	-1	25037..25663	-	208	89052518	-	Jann_0027	-	hypothetical protein
28	 62.50	0	25771..26970	-	399	89052519	-	Jann_0028	-	aromatic amino acid aminotransferase
29	 62.21	0	26948..27508	-	186	89052520	-	Jann_0029	-	GCN5-related N-acetyltransferase
30	 61.69	0	27505..28368	-	287	89052521	-	Jann_0030	-	3-mercaptopyruvate sulfurtransferase
31	 58.07	-1	28499..28975	-	158	89052522	smpB	Jann_0031	-	SsrA-binding protein
32	 65.22	0	29017..30189	-	390	89052523	-	Jann_0032	-	major facilitator transporter
33	 61.76	0	30186..31061	-	291	89052524	-	Jann_0033	-	dihydrodipicolinate synthase
34	 63.90	0	31209..33158	+	649	89052525	-	Jann_0034	-	lytic transglycosylase, catalytic
35	 61.78	0	33223..33693	+	156	89052526	-	Jann_0035	-	TspO and MBR like proteins
36	 58.16	-1	33958..34251	+	97	89052527	-	Jann_0036	-	hypothetical protein
37	 63.16	0	34695..35036	+	113	89052528	-	Jann_0037	-	hypothetical protein
38	 63.03	0	35188..37662	-	824	89052529	infB	Jann_0038	-	translation initiation factor IF-2
39	 61.93	0	37659..38291	-	210