IslandPath Analysis: Thermococcus kodakarensis KOD1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.39   STD DEV: 4.28
Thermococcus kodakarensis KOD1, complete genome - 1..2088737
2306 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.86	0	1..5016	+	1671	57639936	-	TK0001	-	DNA-dependent DNA polymerase family B protein
2	 55.40	0	5086..5733	+	215	57639937	-	TK0002	-	zinc-dependent protease
3	 52.31	0	5730..6119	+	129	57639938	-	TK0003	-	hypothetical protein
4	 52.67	0	6079..6528	-	149	57639939	-	TK0004	-	hypothetical protein
5	 53.85	0	6586..7014	+	142	57639940	-	TK0005	-	CoA-binding protein
6	 43.84	-1	7152..7427	-	91	57639941	-	TK0006	-	hypothetical protein
7	 50.00	0	7399..7614	-	71	57639942	-	TK0007	-	hypothetical protein
8	 53.22	0	7655..8755	-	366	57639943	-	TK0008	-	DNA methylase
9	 50.36	0	8843..10093	+	416	57639944	-	TK0009	-	hypothetical protein
10	 47.02	-1	10095..10379	+	94	57639945	-	TK0010	-	hypothetical protein
11	 54.85	0	10385..10807	+	140	57639946	-	TK0011	-	hypothetical protein
12	 51.08	0	10808..11365	-	185	57639947	-	TK0012	-	GTP-binding protein
13	 53.21	0	11415..11726	+	103	57639948	-	TK0013	-	hypothetical protein
14	 52.51	0	11729..12286	+	185	57639949	-	TK0014	-	HD superfamily metal-dependent phosphohydrolase
15	 54.55	0	12347..13411	+	354	57639950	-	TK0015	-	hypothetical protein
16	 47.00	-1	13392..13808	-	138	57639951	-	TK0016	-	nucleic acid-binding protein
17	 49.54	0	13808..14023	-	71	57639952	-	TK0017	-	SpoVT/AbrB family transcriptional regulator
18	 55.24	0	14153..14896	+	247	57639953	-	TK0018	-	ABC-type sulfate transport system, permease component
19	 42.84	-2	14945..15964	+	339	57639954	-	TK0019	-	ABC transporter ATPase
20	 44.13	-1	15968..16699	+	243	57639955	-	TK0020	-	hypothetical protein
21	 54.58	0	16705..17697	+	330	57639956	-	TK0021	-	ABC-type sulfate transport system, ATPase component
22	 56.92	+1	17780..18784	-	334	57639957	-	TK0022	-	hypothetical protein
23	 55.76	0	18786..19280	-	164	57639958	-	TK0023	-	hypothetical protein
24	 57.27	+1	19290..20183	-	297	57639959	-	TK0024	-	hypothetical protein
25	 55.15	0	20183..21172	-	329	57639960	-	TK0025	-	hypothetical protein
26	 50.46	0	21266..21919	-	217	57639961	-	TK0026	-	HAD family phosphoglycolate phosphatase
27	 54.03	0	21913..22569	-	218	57639962	-	TK0027	-	hypothetical protein
28	 55.13	0	22597..23862	-	421	57639963	-	TK0028	-	S-adenosyl-L-homocysteine hydrolase
29	 53.70	0	23956..24834	+	292	57639964	-	TK0029	-	zinc-dependent hydrolase
30	 53.33	0	24882..25451	+	189	57639965	-	TK0030	-	cyclase-related protein
31	 52.63	0	25413..25811	-	132	57639966	-	TK0031	-	ribonuclease P protein component 4
32	 51.16	0	25813..27315	-	500	57639967	-	TK0032	-	hypothetical protein
33	 49.34	0	27565..28620	+	351	57639968	-	TK0033	-	hypothetical protein
34	 47.45	-1	28591..29334	-	247	57639969	-	TK0034	-	hypothetical protein
35	 53.99	0	29404..30681	+	425	57639970	-	TK0035	-	hypothetical protein
36	 53.33	0	30937..31266	+	109	57639971	-	TK0036	-	hypothetical protein
37	 50.73	0	31276..32235	+	319	57639972	-	TK0037	-	SAM-dependent methyltransferase
38	 54.12	0	32367..33251	+	294	57639973	-	TK0038	-	flagellin
39	 52.38	0	33291..35033	+	580	57639974	-	TK0039	-	flagellin
40	 55.86	0	35048..35824	+	258	57639975	-	TK0040	-	flagellin
41	 58.03	+1	35882..36541	+	219	57639976	-	TK0041	-	flagellin
42	 53.62	0	36553..37380	+	275	57639977	-	TK0042	-	flagellin
43	 49.90	0	37394..37870	+	158	57639978	-	TK0043	-	flagella-related protein C
44	 54.81	0	37874..39298	+	474	57639979	-	TK0044	-	flagella-related protein D, internal insertion
45	 51.43	0	39323..39847	+	174	57639980	-	TK0045	-	flagella-related protein F
46	 52.88	0	39847..40332	+	161	57639981	-	TK0046	-	flagella-related protein G
47	 52.22	0	40372..41070	+	232	57639982	-	TK0047	-	flagellar accessory protein FlaH
48	 54.65	0	41072..42694	+	540	57639983	-	TK0048	-	flagella-related protein I, secretion ATPase
49	 52.07	0	42705..44444	+	579	57639984	-	TK0049	-	flagellar assembly protein J
50	 47.62	-1	44441..46435	+	664	57639985	-	TK0050	-	hypothetical protein
51	 52.44	0	46479..46991	+	170	57639986	pcm	TK0051	-	protein-L-isoaspartate O-methyltransferase
52	 53.49	0	47171..47800	+	209	57639987	-	TK0052	-	phosphoserine phosphatase
53	 52.20	0	47938..49140	-	400	57639988	-	TK0053	-	signal peptidase
54	 50.00	0	49154..49321	-	55	57639989	-	TK0054	-	hypothetical protein
55	 48.08	-1	49394..49732	+	112	57639990	-	TK0055	-	hypothetical protein
56	 52.46	0	49729..50298	+	189	57639991	-	TK0056	-	hypothetical protein
57	 51.97	0	50279..50557	-	92	57639992	-	TK0057	-	hypothetical protein
58	 50.50	0	50709..51413	+	234	57639993	-	TK0058	-	HAD superfamily hydrolase
59	 55.09	0	51484..52053	-	189	57639994	-	TK0059	-	CDP-alcohol phosphatidyltransferase
60	 51.75	0	52064..52606	-	180	57639995	-	TK0060	-	tRNA 2'-O-methylase
61	 45.90	-1	52603..54201	-	532	57639996	-	TK0061	-	hypothetical protein
62	 54.86	0	54251..55021	+	256	57639997	-	TK0062	-	hypothetical protein
63	 48.82	0	55059..55607	+	182	57639998	-	TK0063	-	nucleotidyltransferase/DNA-binding domain-containing protein
64	 49.08	0	55639..56019	+	126	57639999	-	TK0064	-	hypothetical protein
65	 44.28	-1	56064..56264	+	66	57640000	-	TK0065	-	hypothetical protein
66	 42.80	-2	56245..56709	+	154	57640001	-	TK0066	-	nucleic acid-binding protein
67	 52.91	0	56702..57268	+	188	57640002	-	TK0067	-	nicotinamide-nucleotide adenylyltransferase
68	 48.38	0	57265..57603	-	112	57640003	-	TK0068	-	hypothetical protein
69	 52.78	0	57600..58247	-	215	57640004	-	TK0069	-	RecB family exonuclease
70	 53.87	0	58403..58738	-	111	57640005	-	TK0070	-	hypothetical protein
71	 51.14	0	58868..59704	+	278	57640006	-	TK0071	-	Met-10+ like protein
72	 59.57	+1	59899..61800	-	633	57640007	-	TK0072	-	tungsten-containing oxidoreductase
73	 54.14	0	62831..63724	+	297	57640008	-	TK0073	-	SSV1 integrase homolog, C-fragment
74	 51.78	0	64227..65993	+	588	57640009	-	TK0074	-	hypothetical protein
75	 51.20	0	66046..67383	+	445	57640010	-	TK0075	-	hypothetical protein
76	 53.46	0	67400..68974	+	524	57640011	-	TK0076	-	subtilisin-like serine protease precursor
77	 48.61	0	68971..69114	+	47	57640012	-	TK0077	-	hypothetical protein
78	 55.81	0	69118..69375	+	85	57640013	-	TK0078	-	hypothetical protein
79	 54.45	0	69404..69796	+	130	57640014	-	TK0079	-	hypothetical protein
80	 52.72	0	69796..70512	+	238	57640015	-	TK0080	-	hypothetical protein
81	 53.67	0	70514..71113	+	199	57640016	-	TK0081	-	hypothetical protein
82	 51.16	0	71118..71246	+	42	57640017	-	TK0082	-	hypothetical protein
83	 54.83	0	71243..71563	+	106	57640018	-	TK0083	-	hypothetical protein
84	 54.61	0	71565..71705	+	46	57640019	-	TK0084	-	hypothetical protein
85	 53.75	0	71689..72594	+	301	57640020	-	TK0085	-	hypothetical protein
86	 50.00	0	72765..73340	+	191	57640021	-	TK0086	-	ArsR family transcriptional regulator
87	 52.29	0	73337..74644	+	435	57640022	-	TK0087	-	hypothetical protein
88	 51.36	0	74625..75761	+	378	57640023	-	TK0088	-	hypothetical protein
89	 47.99	-1	75754..76026	+	90	57640024	-	TK0089	-	hypothetical protein
90	 53.24	0	76023..77459	+	478	57640025	-	TK0090	-	hypothetical protein
91	 46.88	-1	77703..79046	+	447	57640026	-	TK0091	-	hypothetical protein
92	 44.93	-1	79043..79249	+	68	57640027	-	TK0092	-	hypothetical protein
93	 50.98	0	79243..79497	+	84	57640028	-	TK0093	-	hypothetical protein
94	 46.83	-1	79753..80130	+	125	57640029	-	TK0094	-	SpoVT/AbrB family transcription regulator
95	 50.00	0	80256..80429	+	57	57640030	-	TK0095	-	hypothetical protein
96	 53.33	0	80433..83177	+	914	57640031	-	TK0096	-	MCM2/3/5 family DNA replication licensing factor
97	 63.49	+2	83184..83435	+	83	57640032	-	TK0097	-	hypothetical protein
98	 54.04	0	83432..83629	+	65	57640033	-	TK0098	-	hypothetical protein
99	 53.33	0	83733..83912	+	59	57640034	-	TK0099	-	hypothetical protein
100	 62.22	+2	83909..84268	+	119	57640035	-	TK0100	-	hypothetical protein
52.39	MEAN

4.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.