IslandPath Analysis: Salinibacter ruber DSM 13855



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.46   STD DEV: 4.24
Salinibacter ruber DSM 13855, complete genome - 1..3551823
2801 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.13	0	2..1576	+	524	83815237	dnaA	SRU_0001	-	chromosomal replication initiator protein DnaA
2	 63.40	0	1709..2842	+	377	83814447	dnaN	SRU_0002	-	DNA polymerase III, beta subunit
3	 64.76	0	2936..3931	-	331	83816215	-	SRU_0003	-	TPR repeat-containing protein
4	 58.96	-1	4174..4809	-	211	83815766	-	SRU_0004	-	RNA polymerase sigma-70 factor, putative
5	 61.85	-1	5074..6048	+	324	83814655	-	SRU_0005	-	SCO1/SenC family protein
6	 66.78	0	6116..7009	-	297	83814221	-	SRU_0006	-	retinol dehydrogenase 11
7	 65.71	0	7159..7893	-	244	83815955	rpe	SRU_0007	-	ribulose-phosphate 3-epimerase
8	 62.28	0	8062..8403	+	113	83815163	-	SRU_0008	-	hypothetical protein
9	 63.55	0	8568..9080	+	170	83814509	-	SRU_0009	-	hypothetical protein
10	 69.71	0	9129..10181	-	350	83816549	-	SRU_0010	-	hypothetical protein
11	 58.93	-1	10739..11074	+	111	83815060	yajC	SRU_0011	-	preprotein translocase, YajC subunit
12	 66.35	0	11129..12376	+	415	83814252	ribBA	SRU_0012	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
13	 60.00	-1	12429..12593	+	54	83814077	-	SRU_0013	-	hypothetical protein
14	 63.97	0	13259..15703	-	814	83816444	-	SRU_0014	-	DNA internalization-related competence protein ComEC/Rec2
15	 62.53	0	15916..16398	+	160	83816060	nusB	SRU_0015	-	transcription antitermination factor NusB
16	 63.20	0	16451..17113	+	220	83814866	-	SRU_0016	-	serine/threonine protein phosphatase
17	 65.17	0	17091..18293	+	400	83815143	ychF	SRU_0017	-	translation-associated GTPase
18	 68.48	0	18623..19558	+	311	83814512	-	SRU_0018	-	hypothetical protein
19	 68.41	0	19634..20893	+	419	83815798	-	SRU_0019	-	hypothetical protein
20	 63.87	0	21007..21828	+	273	83816431	-	SRU_0020	-	phosphosulfolactate synthase
21	 58.65	-1	22022..22258	+	78	83814500	rpmB	SRU_0021	-	ribosomal protein L28
22	 56.36	-2	22333..22497	+	54	83815176	rpmG	SRU_0022	-	ribosomal protein L33
23	 57.33	-2	22501..22650	+	49	83816143	-	SRU_0023	-	hypothetical protein
24	 65.57	0	23412..25964	-	850	83815576	-	SRU_0026	-	putative replicative DNA helicase, intein-containing
25	 65.51	0	26151..27014	-	287	83816180	-	SRU_0027	-	uracil-DNA glycosylase
26	 70.13	0	27039..28280	-	413	83814400	coaBC	SRU_0028	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
27	 61.48	-1	28463..28828	-	121	83815006	-	SRU_0029	-	hypothetical protein
28	 63.84	0	28890..29456	-	188	83815961	-	SRU_0030	-	guanylate kinase
29	 66.44	0	29546..30430	-	294	83815150	-	SRU_0031	-	hypothetical protein
30	 61.58	-1	30705..31274	-	189	83816107	frr	SRU_0033	-	ribosome recycling factor
31	 65.13	0	31323..32102	-	259	83816709	pyrH	SRU_0034	-	uridylate kinase
32	 66.67	0	32287..33117	-	276	83815038	tsf	SRU_0035	-	translation elongation factor Ts
33	 63.01	0	33185..34279	-	364	83815455	rpsB	SRU_0036	-	ribosomal protein S2
34	 66.67	0	34420..34818	-	132	83816332	rpsI	SRU_0037	-	ribosomal protein S9
35	 63.69	0	34873..35343	-	156	83814640	rplM	SRU_0038	-	50S ribosomal protein L13
36	 66.67	0	35672..36193	+	173	83815425	-	SRU_0039	-	hypothetical protein
37	 61.62	-1	36363..36560	+	65	83815909	rpmF	SRU_0040	-	ribosomal protein L32
38	 65.98	0	36837..37853	+	338	83814266	plsX	SRU_0041	-	putative glycerol-3-phosphate acyltransferase PlsX
39	 68.76	0	37897..38901	+	334	83814585	fabH	SRU_0042	-	3-oxoacyl-(acyl carrier protein) synthase III
40	 70.19	0	38904..39926	+	340	83816635	fabD	SRU_0043	-	malonyl CoA-acyl carrier protein transacylase
41	 67.97	0	39988..40833	+	281	83815821	-	SRU_0044	-	hypothetical protein
42	 67.73	0	41017..41766	+	249	83814928	fabG	SRU_0045	-	3-oxoacyl-(acyl-carrier-protein) reductase
43	 65.83	0	41983..43419	+	478	83816639	-	SRU_0046	-	ATP-dependent RNA helicase
44	 69.05	0	44458..45588	-	376	83816345	-	SRU_0047	-	DoxX subfamily protein
45	 68.65	0	45691..45942	-	83	83814678	-	SRU_0048	-	hypothetical protein
46	 68.61	0	46066..47298	+	410	83816340	-	SRU_0049	-	aminopeptidase
47	 72.77	+1	47601..49058	+	485	83815928	-	SRU_0050	-	PKD domain-containing protein
48	 58.22	-1	49558..49782	+	74	83814408	rpmH	SRU_0053	-	hypothetical protein
49	 70.98	+1	49795..50235	+	146	83816626	-	SRU_0054	-	hypothetical protein
50	 66.07	0	50381..52378	+	665	83816022	-	SRU_0055	-	inner membrane protein oxaA
51	 70.06	0	52573..53958	+	461	83815382	trmE	SRU_0056	-	tRNA modification GTPase TrmE
52	 67.87	0	54149..54895	+	248	83814393	-	SRU_0057	-	acyl-ACP thioesterase
53	 69.81	0	55061..55792	+	243	83816262	-	SRU_0058	-	hypothetical protein
54	 70.21	0	56738..57217	+	159	83816673	-	SRU_0059	-	hypothetical protein
55	 66.82	0	57685..59679	+	664	83815019	gidA	SRU_0060	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
56	 69.44	0	59754..60401	+	215	83815319	-	SRU_0061	-	glucose inhibited division protein B
57	 68.29	0	60470..61330	+	286	83815935	-	SRU_0062	-	hypothetical protein
58	 67.31	0	61566..64994	-	1142	83816849	mfd	SRU_0063	-	transcription-repair coupling factor
59	 68.91	0	65480..65836	+	118	83814652	-	SRU_0064	-	biotin synthesis protein, putative
60	 68.70	0	66646..67581	-	311	83815682	murQ	SRU_0065	-	N-acetylmuramic acid-6-phosphate etherase
61	 68.20	0	67641..70316	-	891	83814071	-	SRU_0066	-	TPR repeat-containing protein
62	 70.54	0	71532..72770	+	412	83814830	recF	SRU_0067	-	DNA replication and repair protein RecF
63	 66.80	0	72880..74355	+	491	83815610	-	SRU_0068	-	M48 family peptidase
64	 63.98	0	74455..74901	-	148	83816826	-	SRU_0069	-	putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein
65	 67.73	0	75152..77701	+	849	83814430	-	SRU_0070	-	hypothetical protein
66	 62.91	0	77736..79091	-	451	83814492	-	SRU_0071	-	integrase/recombinase
67	 59.54	-1	80198..80590	+	130	83816383	-	SRU_0072	-	PilT protein, N-terminal, putative
68	 56.10	-2	82004..82249	+	81	83816148	-	SRU_0073	-	hypothetical protein
69	 68.08	0	82754..84880	-	708	83815139	malP	SRU_0074	-	maltodextrin phosphorylase
70	 70.78	+1	84966..87374	+	802	83815858	-	SRU_0075	-	sensor histidine kinase
71	 69.21	0	87384..88247	-	287	83815394	-	SRU_0076	-	hypothetical protein
72	 70.29	0	88366..89799	-	477	161986637	-	SRU_0077	-	mercuric reductase
73	 68.38	0	89850..91364	-	504	83814146	zwf	SRU_0078	-	glucose-6-phosphate 1-dehydrogenase
74	 69.41	0	91440..92351	-	303	161986629	gnd	SRU_0079	-	6-phosphogluconate dehydrogenase-like protein
75	 70.83	+1	92501..95263	-	920	83815544	tal	SRU_0080	-	bifunctional transaldolase/phosoglucose isomerase
76	 64.77	0	96341..96973	+	210	83814983	-	SRU_0081	-	hypothetical protein
77	 64.20	0	97174..97821	+	215	83814371	-	SRU_0082	-	HTH-type transcriptional repressor Bm3R1, putative
78	 74.08	+1	98069..100429	+	786	83816237	-	SRU_0083	-	cation efflux system protein, putative
79	 70.66	0	100404..101579	+	391	83814905	-	SRU_0084	-	putative transport/efflux transmembrane protein
80	 66.50	0	101639..104689	+	1016	83814891	-	SRU_0085	-	AcrB/AcrD/AcrF family transporter
81	 70.08	0	105156..107294	+	712	83814131	-	SRU_0086	-	sensory box histidine kinase/response regulator
82	 68.81	0	107353..109308	-	651	83816514	ark	SRU_0087	-	adaptive-response sensory-kinase
83	 67.49	0	109551..112091	-	846	83815223	-	SRU_0088	-	pyridine nucleotide-disulphide oxidoreductase domain-containing protein
84	 67.78	0	112163..113872	-	569	83816801	-	SRU_0089	-	membrane bound his kinase A
85	 66.60	0	113972..115429	-	485	83816070	-	SRU_0090	-	hypothetical protein
86	 63.30	0	115517..116584	+	355	83815650	-	SRU_0091	-	hypothetical protein
87	 68.69	0	116581..117471	+	296	83816233	-	SRU_0092	-	hypothetical protein
88	 69.76	0	117625..120498	+	957	83814357	ppc	SRU_0093	-	phosphoenolpyruvate carboxylase
89	 68.33	0	120498..121160	+	220	83814232	-	SRU_0094	-	hypothetical protein
90	 66.85	0	121196..124399	-	1067	83815062	-	SRU_0095	-	utilizing regulatory protein tutC
91	 60.19	-1	125039..127927	+	962	83816843	-	SRU_0096	-	TonB-dependent receptor domain-containing protein
92	 59.75	-1	127950..129395	+	481	83814670	-	SRU_0097	-	hypothetical protein
93	 61.78	-1	129371..130924	+	517	83815813	-	SRU_0098	-	hypothetical protein
94	 63.48	0	131485..132615	+	376	83816358	mauG	SRU_0099	-	methylamine utilization protein
95	 70.88	+1	132844..133863	+	339	83814626	-	SRU_0100	-	hypothetical protein
96	 68.14	0	134106..134714	+	202	83816505	-	SRU_0101	-	hypothetical protein
97	 71.36	+1	134774..135604	+	276	83815861	-	SRU_0102	-	hypothetical protein
98	 63.80	0	135622..136074	+	150	83815416	-	SRU_0103	-	TPR repeat-containing protein
99	 73.01	+1	136108..137163	+	351	83814808	-	SRU_0104	-	LysM domain-containing protein
100	 67.43	0	137252..138040	+	262	83816698	-	SRU_0105	-	CAAX amino protease
66.46	MEAN

4.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.