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IslandPath Analysis: Polynucleobacter sp. QLW-P1DMWA-1

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.00 STD DEV: 2.74

Polynucleobacter sp. QLW-P1DMWA-1, complete genome - 1..2159490
2077 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.75	0	33..1460	+	475	145588190	-	Pnuc_0001	-	chromosomal replication initiator protein DnaA
2	 40.50	-1	1724..2839	+	371	145588191	-	Pnuc_0002	-	DNA polymerase III subunit beta
3	 44.02	0	2851..5349	+	832	145588192	-	Pnuc_0003	-	DNA gyrase, B subunit
4	 43.43	0	5352..5846	+	164	145588193	-	Pnuc_0004	-	nuclear protein SET
5	 49.33	+1	5855..6079	+	74	145588194	-	Pnuc_0005	-	hypothetical protein
6	 45.28	0	6181..6942	+	253	145588195	-	Pnuc_0006	-	ABC transporter related
7	 45.53	0	6939..7643	+	234	145588196	-	Pnuc_0007	-	ABC transporter related
8	 42.48	0	7672..8874	+	400	145588197	-	Pnuc_0008	-	extracellular ligand-binding receptor
9	 46.10	0	8878..9762	+	294	145588198	-	Pnuc_0009	-	inner-membrane translocator
10	 45.14	0	9759..10715	+	318	145588199	-	Pnuc_0010	-	inner-membrane translocator
11	 45.27	0	10721..11734	-	337	145588200	-	Pnuc_0011	-	aminoglycoside phosphotransferase
12	 45.91	0	11742..12512	-	256	145588201	-	Pnuc_0012	-	short-chain dehydrogenase/reductase SDR
13	 46.55	0	12512..13759	-	415	145588202	-	Pnuc_0013	-	acyl-CoA dehydrogenase domain-containing protein
14	 46.21	0	13784..14575	+	263	145588203	-	Pnuc_0014	-	hypothetical protein
15	 48.96	+1	14682..16601	+	639	145588204	-	Pnuc_0015	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
16	 43.05	0	16598..17266	+	222	145588205	-	Pnuc_0016	-	methyltransferase GidB
17	 44.10	0	17284..18054	+	256	145588206	-	Pnuc_0017	-	cobyrinic acid a,c-diamide synthase
18	 49.61	+1	18075..18965	+	296	145588207	-	Pnuc_0018	-	parB-like partition protein
19	 43.03	0	19034..19528	+	164	145588208	-	Pnuc_0019	-	putative ATP synthase protein I AtpI
20	 43.61	0	19568..20443	+	291	145588209	-	Pnuc_0020	-	F0F1 ATP synthase subunit A
21	 46.07	0	20489..20755	+	88	145588210	-	Pnuc_0021	-	F0F1 ATP synthase subunit C
22	 48.20	+1	20819..21289	+	156	145588211	-	Pnuc_0022	-	ATP synthase F0, B subunit
23	 44.69	0	21291..21827	+	178	145588212	-	Pnuc_0023	-	ATP synthase F1, delta subunit
24	 48.90	+1	21873..23414	+	513	145588213	-	Pnuc_0024	-	F0F1 ATP synthase subunit alpha
25	 44.37	0	23432..24301	+	289	145588214	-	Pnuc_0025	-	ATP synthase F1, gamma subunit
26	 47.25	0	24357..25757	+	466	145588215	-	Pnuc_0026	-	F0F1 ATP synthase subunit beta
27	 48.68	+1	25779..26195	+	138	145588216	-	Pnuc_0027	-	ATP synthase F1, epsilon subunit
28	 47.21	0	26211..27320	+	369	145588217	-	Pnuc_0028	-	uroporphyrinogen decarboxylase
29	 47.51	0	27590..29719	+	709	145588218	-	Pnuc_0029	-	primosomal protein N'
30	 45.17	0	29729..30142	-	137	145588219	-	Pnuc_0030	-	glycine cleavage system H protein
31	 45.58	0	30204..30848	+	214	145588220	-	Pnuc_0031	-	beta-lactamase domain-containing protein
32	 46.59	0	31085..32125	-	346	145588221	-	Pnuc_0032	-	fatty acid desaturase
33	 48.61	+1	32491..32994	+	167	145588222	-	Pnuc_0033	-	cytochrome c, class I
34	 47.60	0	33037..33933	-	298	145588223	-	Pnuc_0034	-	uroporphyrin-III C/tetrapyrrole methyltransferase
35	 45.34	0	34010..34642	+	210	145588224	-	Pnuc_0035	-	phosphoheptose isomerase
36	 42.40	0	34672..35322	+	216	145588225	-	Pnuc_0036	-	transport-associated
37	 41.24	-1	35340..35693	+	117	145588226	-	Pnuc_0037	-	cytochrome c, class I
38	 48.25	+1	35690..36346	-	218	145588227	-	Pnuc_0038	-	GCN5-related N-acetyltransferase
39	 47.77	+1	42390..43580	+	396	145588228	-	Pnuc_0039	-	elongation factor Tu
40	 44.97	0	43686..44063	+	125	145588229	-	Pnuc_0040	-	preprotein translocase, SecE subunit
41	 45.20	0	44073..44645	+	190	145588230	-	Pnuc_0041	-	NusG antitermination factor
42	 46.53	0	44813..45244	+	143	145588231	-	Pnuc_0042	-	ribosomal protein L11
43	 45.87	0	45247..45948	+	233	145588232	rplA	Pnuc_0043	-	50S ribosomal protein L1
44	 52.47	+2	46186..46833	+	215	145588233	-	Pnuc_0044	-	ribosomal protein L10
45	 46.40	0	46870..47244	+	124	145588234	-	Pnuc_0045	-	ribosomal protein L7/L12
46	 46.92	0	47471..51571	+	1366	145588235	-	Pnuc_0046	-	DNA-directed RNA polymerase, beta subunit
47	 48.06	+1	51573..55835	+	1420	145588236	-	Pnuc_0047	-	DNA-directed RNA polymerase subunit beta'
48	 46.19	0	56013..56393	+	126	145588237	rpsL	Pnuc_0048	-	30S ribosomal protein S12
49	 48.20	+1	56543..57013	+	156	145588238	-	Pnuc_0049	-	30S ribosomal protein S7
50	 45.51	0	57041..59143	+	700	145588239	-	Pnuc_0050	-	translation elongation factor G
51	 47.77	+1	59194..60384	+	396	145588240	-	Pnuc_0051	-	elongation factor Tu
52	 42.63	0	60518..60829	+	103	145588241	-	Pnuc_0052	-	ribosomal protein S10
53	 48.86	+1	61026..61682	+	218	145588242	-	Pnuc_0053	-	ribosomal protein L3
54	 44.28	0	61694..62314	+	206	145588243	-	Pnuc_0054	-	ribosomal protein L4/L1e
55	 42.54	0	62311..62625	+	104	145588244	rplW	Pnuc_0055	-	50S ribosomal protein L23
56	 48.38	+1	62628..63458	+	276	145588245	rplB	Pnuc_0056	-	50S ribosomal protein L2
57	 42.65	0	63478..63756	+	92	145588246	-	Pnuc_0057	-	ribosomal protein S19
58	 43.94	0	63767..64096	+	109	145588247	rplV	Pnuc_0058	-	50S ribosomal protein L22
59	 47.34	0	64105..64932	+	275	145588248	-	Pnuc_0059	-	ribosomal protein S3
60	 48.31	+1	64935..65348	+	137	145588249	rplP	Pnuc_0060	-	50S ribosomal protein L16
61	 38.97	-2	65345..65557	+	70	145588250	-	Pnuc_0061	-	ribosomal protein L29
62	 44.44	0	65570..65839	+	89	145588251	-	Pnuc_0062	-	ribosomal protein S17
63	 46.88	0	66023..66391	+	122	145588252	-	Pnuc_0063	-	ribosomal protein L14
64	 44.98	0	66401..66709	+	102	145588253	rplX	Pnuc_0064	-	50S ribosomal protein L24
65	 43.28	0	66726..67268	+	180	145588254	-	Pnuc_0065	-	ribosomal protein L5
66	 49.02	+1	67278..67583	+	101	145588255	rpsN	Pnuc_0066	-	30S ribosomal protein S14
67	 45.96	0	67608..68003	+	131	145588256	-	Pnuc_0067	-	ribosomal protein S8
68	 46.63	0	68014..68547	+	177	145588257	-	Pnuc_0068	-	ribosomal protein L6
69	 48.31	+1	68561..68914	+	117	145588258	-	Pnuc_0069	-	ribosomal protein L18
70	 46.44	0	68933..69451	+	172	145588259	rpsE	Pnuc_0070	-	30S ribosomal protein S5
71	 43.92	0	69476..69664	+	62	145588260	-	Pnuc_0071	-	ribosomal protein L30
72	 47.39	0	69692..70132	+	146	145588261	-	Pnuc_0072	-	ribosomal protein L15
73	 44.39	0	70151..71488	+	445	145588262	-	Pnuc_0073	-	preprotein translocase, SecY subunit
74	 47.95	+1	71493..71711	+	72	145588263	-	Pnuc_0074	-	translation initiation factor IF-1
75	 45.63	0	71888..72253	+	121	145588264	rpsM	Pnuc_0075	-	30S ribosomal protein S13
76	 48.53	+1	72272..72679	+	135	145588265	-	Pnuc_0076	-	30S ribosomal protein S11
77	 45.83	0	72798..73421	+	207	145588266	-	Pnuc_0077	-	ribosomal protein S4
78	 44.75	0	73445..74425	+	326	145588267	-	Pnuc_0078	-	DNA-directed RNA polymerase subunit alpha
79	 45.38	0	74442..74831	+	129	145588268	rplQ	Pnuc_0079	-	50S ribosomal protein L17
80	 48.43	+1	74907..75257	+	116	145588269	-	Pnuc_0080	-	CutA1 divalent ion tolerance protein
81	 45.62	0	75254..76930	+	558	145588270	-	Pnuc_0081	-	protein-disulfide reductase
82	 44.04	0	76935..77429	+	164	145588271	-	Pnuc_0082	-	MOSC domain-containing protein
83	 46.39	0	77418..78443	-	341	145588272	-	Pnuc_0083	-	delta-aminolevulinic acid dehydratase
84	 45.65	0	78421..79086	-	221	145588273	-	Pnuc_0084	-	GTP-binding protein, HSR1-related
85	 48.72	+1	79202..79942	+	246	145588274	-	Pnuc_0085	-	cytochrome c553-like protein
86	 45.73	0	80034..81332	-	432	145588275	-	Pnuc_0086	-	diaminopimelate decarboxylase
87	 44.88	0	81571..81951	+	126	145588276	-	Pnuc_0087	-	frataxin family protein
88	 47.15	0	81968..83053	-	361	145588277	-	Pnuc_0088	-	3-dehydroquinate synthase
89	 47.74	0	83059..83544	-	161	145588278	-	Pnuc_0089	-	shikimate kinase
90	 44.07	0	83596..84657	-	353	145588279	-	Pnuc_0090	-	type II and III secretion system protein
91	 43.87	0	84714..85406	-	230	145588280	-	Pnuc_0091	-	hypothetical protein
92	 47.37	0	85548..87884	+	778	145588281	-	Pnuc_0092	-	1A family penicillin-binding protein
93	 45.96	0	87897..88601	+	234	145588282	-	Pnuc_0093	-	hypothetical protein
94	 46.67	0	88797..93542	+	1581	145588283	-	Pnuc_0094	-	glutamate synthase (ferredoxin)
95	 45.63	0	93581..95044	+	487	145588284	-	Pnuc_0095	-	glutamate synthase, NADH/NADPH, small subunit
96	 46.17	0	95055..95903	+	282	145588285	-	Pnuc_0096	-	ABC transporter related
97	 44.61	0	95903..96700	+	265	145588286	-	Pnuc_0097	-	hypothetical protein
98	 42.65	0	96722..97204	+	160	145588287	-	Pnuc_0098	-	hypothetical protein
99	 45.32	0	97204..97962	+	252	145588288	-	Pnuc_0099	-	VacJ family lipoprotein
100	 42.81	0	98024..98656	+	210	145588289	-	Pnuc_0100	-	toluene tolerance family protein
45.00	MEAN

2.74	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.