IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.57   STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.04	0	522..2126	+	534	21226103	-	MM_0001	-	peptide ABC transporter ATP-binding protein
2	 44.53	0	2677..4284	+	535	21226104	-	MM_0002	-	peptide ABC transporter ATP-binding protein
3	 32.39	-2	4334..4546	+	70	21226105	-	MM_0003	-	hypothetical protein
4	 44.31	0	4615..5607	+	330	21226106	dppB	MM_0004	-	peptide ABC transporter permease
5	 44.64	0	5630..6487	+	285	21226107	dppC	MM_0005	-	peptide ABC transporter permease
6	 41.62	0	6523..7500	+	325	21226108	dppD	MM_0006	-	peptide ABC transporter ATP-binding protein
7	 41.18	0	7490..8101	+	203	21226109	dppF	MM_0007	-	peptide ABC transporter ATP-binding protein
8	 49.48	+1	8186..9343	-	385	21226110	-	MM_0008	-	hypothetical protein
9	 51.12	+1	9608..10900	-	430	21226111	-	MM_0009	-	hypothetical protein
10	 47.42	0	11087..11299	-	70	21226112	-	MM_0010	-	hypothetical protein
11	 43.14	0	12748..13155	+	135	21226113	-	MM_0011	-	hypothetical protein
12	 37.98	-1	14436..14801	+	121	21226114	-	MM_0012	-	RNA signal recognition particle 4.5S RNA
13	 39.23	0	15146..15637	+	163	21226115	-	MM_0013	-	hypothetical protein
14	 37.37	-1	16177..16548	+	123	21226116	-	MM_0014	-	undecaprenyl pyrophosphate synthetase
15	 44.94	0	16763..17365	-	200	21226117	-	MM_0015	-	methyltransferase
16	 48.63	+1	18916..19098	+	60	21226118	-	MM_0016	-	translation initiation factor IF-1A
17	 47.08	0	19760..20581	-	273	21226119	ubiE	MM_0017	-	ubiquinone/menaquinone biosynthesis methyltransferase
18	 37.46	-1	21863..22201	+	112	21226120	-	MM_0018	-	hypothetical protein
19	 40.43	0	22682..23977	-	431	21226121	-	MM_0019	-	hypothetical protein
20	 35.91	-1	24297..25307	-	336	21226122	-	MM_0020	-	hypothetical protein
21	 37.60	-1	25929..26186	+	85	21226123	-	MM_0021	-	hypothetical protein
22	 41.39	0	26685..26957	+	90	21226124	-	MM_0022	-	hypothetical protein
23	 43.11	0	26958..27182	+	74	21226125	-	MM_0023	-	hypothetical protein
24	 41.67	0	27399..27710	+	103	21226126	-	MM_0024	-	hypothetical protein
25	 40.28	0	27707..28066	+	119	21226127	-	MM_0025	-	hypothetical protein
26	 38.46	-1	28927..29472	-	181	21226128	-	MM_0026	-	hypothetical protein
27	 36.21	-1	29820..30167	-	115	21226129	-	MM_0027	-	hypothetical protein
28	 33.60	-2	30530..33127	+	865	21226130	-	MM_0028	-	superfamily I DNA/RNA helicase
29	 34.83	-1	33708..34109	+	133	21226131	-	MM_0029	-	hypothetical protein
30	 30.66	-2	34526..35647	-	373	21226132	-	MM_0030	-	O-linked N-acetylglucosamine transferase
31	 41.76	0	36332..36604	+	90	21226133	-	MM_0031	-	hypothetical protein
32	 46.22	0	36605..36829	+	74	21226134	-	MM_0032	-	hypothetical protein
33	 37.63	-1	36987..37358	-	123	21226135	-	MM_0033	-	hypothetical protein
34	 25.50	-2	37836..38780	-	314	21226136	-	MM_0034	-	hypothetical protein
35	 32.96	-2	39205..41862	-	885	21226137	-	MM_0035	-	hypothetical protein
36	 32.49	-2	42333..44348	+	671	21226138	-	MM_0036	-	hypothetical protein
37	 52.74	+1	44603..45787	-	394	161485685	-	MM_0037	-	argininosuccinate synthase
38	 50.25	+1	46169..49390	-	1073	21226140	carB	MM_0038	-	carbamoyl phosphate synthase large subunit
39	 49.74	+1	49390..50529	-	379	21226141	-	MM_0039	-	carbamoyl phosphate synthase small subunit
40	 42.57	0	51425..52777	+	450	21226142	otaA	MM_0040	-	glycine betaine transporter, ATP-binding protein
41	 47.17	0	52774..53604	+	276	21226143	otaB	MM_0041	-	glycine betaine transporter, permease protein
42	 47.45	0	53778..54698	+	306	21226144	otaC	MM_0042	-	glycine betaine transporter, substrate-binding protein
43	 40.37	0	55009..57651	-	880	21226145	-	MM_0043	-	hypothetical protein
44	 45.31	0	58247..59089	+	280	21226146	-	MM_0044	-	hypothetical protein
45	 41.83	0	59399..60481	+	360	21226147	-	MM_0045	-	hypothetical protein
46	 50.10	+1	60558..61070	+	170	21226148	-	MM_0046	-	hypothetical protein
47	 49.65	+1	61663..63090	-	475	21226149	-	MM_0047	-	acetylornithine aminotransferase
48	 48.61	+1	63093..64571	-	492	21226150	-	MM_0048	-	aldehyde dehydrogenase
49	 42.93	0	65089..65484	-	131	21226151	-	MM_0049	-	hypothetical protein
50	 47.11	0	66148..68049	-	633	21226152	-	MM_0050	-	glutamyl-tRNA(Gln) amidotransferase subunit E
51	 41.73	0	68755..69171	+	138	21226153	-	MM_0051	-	hypothetical protein
52	 35.58	-1	69361..70605	-	414	21226154	-	MM_0052	-	transposase
53	 34.27	-1	70675..70887	-	70	21226155	-	MM_0053	-	hypothetical protein
54	 45.97	0	71424..71882	+	152	21226156	-	MM_0054	-	universal stress protein
55	 50.37	+1	72307..73809	-	500	21226157	-	MM_0055	-	tungsten formylmethanofuran dehydrogenase subunit F
56	 50.25	+1	73806..76187	-	793	21226158	-	MM_0056	-	heterodisulfate reductase, subunit A
57	 45.39	0	77008..77289	+	93	21226159	-	MM_0057	-	ferredoxin-thioredoxin reductase, catalytic chain
58	 49.46	+1	77762..78226	+	154	21226160	-	MM_0058	-	tungsten formylmethanofuran dehydrogenase subunit G
59	 46.02	0	78236..79480	+	414	21226161	-	MM_0059	-	tungsten formylmethanofuran dehydrogenase subunit B
60	 44.61	0	79480..79878	+	132	21226162	-	MM_0060	-	tungsten formylmethanofuran dehydrogenase subunit D
61	 39.65	0	80012..80296	+	94	21226163	-	MM_0061	-	hypothetical protein
62	 47.15	0	80558..81223	-	221	21226164	-	MM_0062	-	SAM-dependent methyltransferase
63	 43.22	0	81389..82753	-	454	21226165	-	MM_0063	-	surface layer protein B
64	 42.45	0	83342..85348	-	668	21226166	-	MM_0064	-	surface layer protein B
65	 23.27	-2	85364..85522	-	52	21226167	-	MM_0065	-	hypothetical protein
66	 41.75	0	85907..89065	-	1052	21226168	-	MM_0066	-	hypothetical protein
67	 48.09	0	89713..91257	-	514	21226169	-	MM_0067	-	hypothetical protein
68	 49.27	+1	91254..92966	-	570	21226170	-	MM_0068	-	N-methylhydantoinase (ATP-hydrolyzing)
69	 45.94	0	93523..94458	-	311	21226171	-	MM_0069	-	Sodium-dependent transporter
70	 44.95	0	94842..95573	+	243	21226172	-	MM_0070	-	putative ribosomal RNA methyltransferase
71	 44.54	0	95590..96258	+	222	21226173	-	MM_0071	-	hypothetical protein
72	 49.06	+1	96455..98158	-	567	21226174	-	MM_0072	-	thermosome subunit
73	 47.80	0	98569..99273	-	234	21226175	-	MM_0073	-	ribose 5-phosphate isomerase
74	 48.84	+1	99386..100720	-	444	21226176	aspC	MM_0074	-	aspartyl-tRNA synthetase
75	 42.74	0	101277..101648	+	123	21226177	-	MM_0075	-	hypothetical protein
76	 40.61	0	101875..102135	+	86	21226178	-	MM_0076	-	hypothetical protein
77	 44.92	0	102801..103499	+	232	21226179	-	MM_0077	-	hypothetical protein
78	 44.15	0	103957..104409	-	150	21226180	-	MM_0078	-	xanthine-guanine phosphoribosyltransferase
79	 46.60	0	105080..105976	+	298	21226181	-	MM_0079	-	hypothetical protein
80	 43.94	0	106128..107258	-	376	21226182	-	MM_0080	-	hypothetical protein
81	 48.68	+1	107742..109103	-	453	21226183	-	MM_0081	-	hypothetical protein
82	 47.31	0	109130..109408	-	92	21226184	-	MM_0082	-	hypothetical protein
83	 15.96	-2	109586..109798	-	70	21226185	-	MM_0083	-	hypothetical protein
84	 42.75	0	109844..110374	-	176	21226186	aroK	MM_0084	-	shikimate kinase
85	 39.62	0	110609..110974	-	121	21226187	-	MM_0085	-	hypothetical protein
86	 49.25	+1	111384..111917	-	177	21226188	-	MM_0086	-	tRNA 2'-O-methylase
87	 47.44	0	112009..113532	-	507	21226189	-	MM_0087	-	thymidine phosphorylase
88	 45.21	0	113888..114763	-	291	21226190	-	MM_0088	-	transporter
89	 38.16	-1	115136..115342	-	68	21226191	-	MM_0089	-	hypothetical protein
90	 39.92	0	115984..116226	-	80	21226192	-	MM_0090	-	hypothetical protein
91	 46.56	0	117271..118449	-	392	21226193	-	MM_0091	-	ABC transporter permease protein
92	 46.13	0	118499..119647	-	382	21226194	-	MM_0092	-	hypothetical protein
93	 46.80	0	120209..121708	+	499	21226195	-	MM_0093	-	cobyric acid synthase
94	 52.79	+1	122045..122599	-	184	21226196	-	MM_0094	-	hypothetical protein
95	 39.39	0	123133..123825	+	230	21226197	-	MM_0095	-	hypothetical protein
96	 35.62	-1	124395..125663	+	422	21226198	-	MM_0096	-	transposase
97	 49.15	+1	125736..126740	-	334	21226199	-	MM_0097	-	alanine dehydrogenase
98	 45.01	0	126929..127639	+	236	21226200	-	MM_0098	-	hypothetical protein
99	 49.51	+1	127683..128300	-	205	21226201	-	MM_0099	-	O-linked N-acetylglucosamine transferase
100	 44.36	0	128355..128735	-	126	21226202	-	MM_0100	-	hypothetical protein
43.57	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.